Gchil1718.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1718.t1
Unique NameGchil1718.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1974297..1974989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707163.1
Preferred nameMRPL43
PFAMsL51_S25_CI-B8
Max annot lvl2759|Eukaryota
KEGG koko:K17424
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue5.83e-29
EggNOG OGsKOG3445@1|root,KOG3445@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryF
BRITEbr01610,ko00000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1718Gchil1718Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1974297..1974989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1718.t1Gchil1718.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1974297..1974989 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1718.t1.stop1Gchil1718.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1974297..1974299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1718.t1.CDS1Gchil1718.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1974297..1974676 -
Gchil1718.t1.CDS2Gchil1718.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1974806..1974989 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1718.t1.exon1Gchil1718.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1974297..1974676 -
Gchil1718.t1.exon2Gchil1718.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1974806..1974989 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1718.t1.intron1Gchil1718.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1974677..1974805 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1718.t1.start1Gchil1718.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1974987..1974989 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1718.t1 ID=Gchil1718.t1|Name=Gchil1718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=188bp
MARNGVWELREVLLRYCANSGSSRGVRDFVEHGLVSFARKNPHIQFQTEI
KGGHPCVFCKYVTGYERQRTLKNISAEEVGETLQLLRDTLGRRVPAHNQL
GTGVVEKRAVSVQGVWRNRADLNPPETAETLELREKRRQEYSVDSIIEKY
GVTGLVKITQSLLENRERMRLAALAAMPKKERVMPTE*
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spliced messenger RNA

>Gchil1718.t1 ID=Gchil1718.t1|Name=Gchil1718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00004403_pilon:1974297..1974989- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGCAACGGTGTCTGGGAATTGCGAGAAGTATTACTACGTTACTG
TGCAAACAGCGGAAGTAGTCGTGGTGTCAGGGATTTTGTTGAGCATGGCT
TAGTAAGTTTCGCCAGAAAGAACCCGCATATTCAATTCCAAACCGAGATA
AAAGGAGGTCATCCCTGTGTCTTCTGCAAGTACGTCACTGGATACGAAAG
ACAGAGAACATTGAAAAACATTTCTGCTGAAGAAGTCGGCGAAACTCTAC
AATTATTACGGGACACCTTGGGACGCCGAGTTCCTGCACACAATCAACTA
GGTACCGGAGTGGTCGAGAAGCGAGCAGTTAGTGTTCAGGGCGTATGGAG
GAATCGTGCTGATCTGAACCCACCAGAAACAGCCGAGACCCTCGAGTTGA
GAGAAAAAAGACGTCAGGAGTATTCTGTAGACAGTATAATCGAGAAGTAC
GGAGTAACTGGGTTGGTGAAAATAACACAGAGTCTCTTGGAAAACAGAGA
GCGAATGAGGTTGGCTGCATTAGCAGCGATGCCGAAAAAAGAACGAGTGA
TGCCGACTGAATAA
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protein sequence of Gchil1718.t1

>Gchil1718.t1 ID=Gchil1718.t1|Name=Gchil1718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=188bp
MARNGVWELREVLLRYCANSGSSRGVRDFVEHGLVSFARKNPHIQFQTEI
KGGHPCVFCKYVTGYERQRTLKNISAEEVGETLQLLRDTLGRRVPAHNQL
GTGVVEKRAVSVQGVWRNRADLNPPETAETLELREKRRQEYSVDSIIEKY
GVTGLVKITQSLLENRERMRLAALAAMPKKERVMPTE*
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mRNA from alignment at tig00004403_pilon:1974297..1974989-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1718.t1 ID=Gchil1718.t1|Name=Gchil1718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00004403_pilon:1974297..1974989- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGCAACGGTGTCTGGGAATTGCGAGAAGTATTACTACGTTACTG
TGCAAACAGCGGAAGTAGTCGTGGTGTCAGGGATTTTGTTGAGCATGGCT
TAGTAAGTTTCGCCAGAAAGAACCCGCATATTCAATTCCAAACCGAGATA
AAAGGAGGTCATCCCTGTGTCTTCTGCAAGTACGGTATGTATCAAAAAGC
ATCATACGCCTCCTGGTTCAAGCCTGAAATCCGCAACTGGACGACAGATT
TCTGAAAGTTGAATTGATACTAACGTTGATATGTGATCAATAACGTACGG
GACCTGGGGATAGTCACTGGATACGAAAGACAGAGAACATTGAAAAACAT
TTCTGCTGAAGAAGTCGGCGAAACTCTACAATTATTACGGGACACCTTGG
GACGCCGAGTTCCTGCACACAATCAACTAGGTACCGGAGTGGTCGAGAAG
CGAGCAGTTAGTGTTCAGGGCGTATGGAGGAATCGTGCTGATCTGAACCC
ACCAGAAACAGCCGAGACCCTCGAGTTGAGAGAAAAAAGACGTCAGGAGT
ATTCTGTAGACAGTATAATCGAGAAGTACGGAGTAACTGGGTTGGTGAAA
ATAACACAGAGTCTCTTGGAAAACAGAGAGCGAATGAGGTTGGCTGCATT
AGCAGCGATGCCGAAAAAAGAACGAGTGATGCCGACTGAATAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1974297..1974989-

>Gchil1718.t1 ID=Gchil1718.t1|Name=Gchil1718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00004403_pilon:1974297..1974989- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGCAACGGTGTCTGGGAATTGCGAGAAGTATTACTACGTTACTG
TGCAAACAGCGGAAGTAGTCGTGGTGTCAGGGATTTTGTTGAGCATGGCT
TAGTAAGTTTCGCCAGAAAGAACCCGCATATTCAATTCCAAACCGAGATA
AAAGGAGGTCATCCCTGTGTCTTCTGCAAGTACGTCACTGGATACGAAAG
ACAGAGAACATTGAAAAACATTTCTGCTGAAGAAGTCGGCGAAACTCTAC
AATTATTACGGGACACCTTGGGACGCCGAGTTCCTGCACACAATCAACTA
GGTACCGGAGTGGTCGAGAAGCGAGCAGTTAGTGTTCAGGGCGTATGGAG
GAATCGTGCTGATCTGAACCCACCAGAAACAGCCGAGACCCTCGAGTTGA
GAGAAAAAAGACGTCAGGAGTATTCTGTAGACAGTATAATCGAGAAGTAC
GGAGTAACTGGGTTGGTGAAAATAACACAGAGTCTCTTGGAAAACAGAGA
GCGAATGAGGTTGGCTGCATTAGCAGCGATGCCGAAAAAAGAACGAGTGA
TGCCGACTGAATAA
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