Gchil1709.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1709.t1
Unique NameGchil1709.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1943383..1943646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1709Gchil1709Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1943383..1943646 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1709.t1.stop1Gchil1709.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1943383..1943385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1709.t1.CDS1Gchil1709.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1943383..1943646 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1709.t1.exon1Gchil1709.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1943383..1943646 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1709.t1.start1Gchil1709.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1943644..1943646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1709.t1Gchil1709.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1943383..1943646 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1709.t1 ID=Gchil1709.t1|Name=Gchil1709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=88bp
MTLCPYKWFLYIASVWAVLYVMVEAWMHMRNATKQVDEYQQQTELEDDDD
SDEEEEEEEEEEKESRDVAYEPLLMRASLSTSLVSTR*
back to top

spliced messenger RNA

>Gchil1709.t1 ID=Gchil1709.t1|Name=Gchil1709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00004403_pilon:1943383..1943646- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTGTGCCCCTACAAATGGTTCCTTTACATCGCTTCGGTGTGGGC
TGTACTGTACGTCATGGTCGAAGCCTGGATGCACATGCGCAATGCAACAA
AACAAGTTGATGAGTACCAACAACAGACTGAACTGGAAGACGACGACGAT
TCCGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAAGTCGCGA
CGTTGCTTATGAACCTTTGCTAATGCGCGCAAGTCTCAGCACATCATTGG
TTTCCACTCGGTAG
back to top

protein sequence of Gchil1709.t1

>Gchil1709.t1 ID=Gchil1709.t1|Name=Gchil1709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=88bp
MTLCPYKWFLYIASVWAVLYVMVEAWMHMRNATKQVDEYQQQTELEDDDD
SDEEEEEEEEEEKESRDVAYEPLLMRASLSTSLVSTR*
back to top

mRNA from alignment at tig00004403_pilon:1943383..1943646-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1709.t1 ID=Gchil1709.t1|Name=Gchil1709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00004403_pilon:1943383..1943646- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCTGTGCCCCTACAAATGGTTCCTTTACATCGCTTCGGTGTGGGC
TGTACTGTACGTCATGGTCGAAGCCTGGATGCACATGCGCAATGCAACAA
AACAAGTTGATGAGTACCAACAACAGACTGAACTGGAAGACGACGACGAT
TCCGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAAGTCGCGA
CGTTGCTTATGAACCTTTGCTAATGCGCGCAAGTCTCAGCACATCATTGG
TTTCCACTCGGTAG
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:1943383..1943646-

>Gchil1709.t1 ID=Gchil1709.t1|Name=Gchil1709.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=264bp|location=Sequence derived from alignment at tig00004403_pilon:1943383..1943646- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCTGTGCCCCTACAAATGGTTCCTTTACATCGCTTCGGTGTGGGC
TGTACTGTACGTCATGGTCGAAGCCTGGATGCACATGCGCAATGCAACAA
AACAAGTTGATGAGTACCAACAACAGACTGAACTGGAAGACGACGACGAT
TCCGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAAGTCGCGA
CGTTGCTTATGAACCTTTGCTAATGCGCGCAAGTCTCAGCACATCATTGG
TTTCCACTCGGTAG
back to top