Gchil1702.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1702.t1
Unique NameGchil1702.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1838159..1838839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3712.Bo6g080820.1
PFAMsNUDIX,Peptidase_M49
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0016787,GO:0019538,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue1.38e-38
EggNOG OGsCOG0494@1|root,2QT89@2759|Eukaryota,37JK2@33090|Viridiplantae,3G9XH@35493|Streptophyta,3HMJ1@3699|Brassicales
DescriptionNudix hydrolase
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1702Gchil1702Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1838159..1838839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1702.t1Gchil1702.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1838159..1838839 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1702.t1.start1Gchil1702.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1838159..1838161 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1702.t1.CDS1Gchil1702.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1838159..1838347 +
Gchil1702.t1.CDS2Gchil1702.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1838438..1838839 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1702.t1.exon1Gchil1702.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1838159..1838347 +
Gchil1702.t1.exon2Gchil1702.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1838438..1838839 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1702.t1.intron1Gchil1702.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1838348..1838437 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1702.t1.stop1Gchil1702.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1838837..1838839 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1702.t1 ID=Gchil1702.t1|Name=Gchil1702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=197bp
MAHTSSEEHFDVLNEKGSPLGFSKARSLVHRDGDWHRSTHVWLLSTRGEV
LVQMRSALKDTFPGRWDVSAAGHISAGGDSLPSAIRELEEELGIHLQEGE
EVEFLTSVKASATGRTDRHGPYVDNEIQDIYVYRPKETVPPNRMILQREE
VDKVEYWPWSEYRERCLNNDEILVPRSEMYKQKAFPMLEEAIAKSS*
back to top

spliced messenger RNA

>Gchil1702.t1 ID=Gchil1702.t1|Name=Gchil1702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00004403_pilon:1838159..1838839+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCACACTTCTTCCGAAGAGCATTTTGATGTTCTGAACGAAAAAGG
AAGCCCTTTGGGCTTTTCAAAAGCTCGCTCGCTAGTACACAGAGATGGTG
ACTGGCATAGATCCACTCATGTTTGGCTTCTCTCCACTCGAGGCGAAGTT
TTGGTTCAGATGCGCTCAGCCCTGAAAGACACTTTTCCGGGTCGATGGGA
TGTTTCGGCCGCGGGGCACATTTCCGCAGGCGGGGATAGCTTACCTTCAG
CCATCCGGGAACTTGAGGAGGAGTTAGGAATACATCTGCAAGAGGGCGAA
GAGGTAGAATTCTTAACCTCTGTGAAAGCATCAGCAACGGGTAGAACAGA
TAGACACGGGCCTTATGTGGATAACGAGATCCAGGATATATATGTCTATA
GACCAAAAGAGACCGTTCCTCCCAATAGAATGATCCTGCAAAGGGAAGAA
GTTGATAAAGTGGAGTACTGGCCCTGGTCGGAATACCGAGAAAGATGTCT
CAATAACGATGAAATATTGGTGCCCAGAAGTGAAATGTACAAGCAGAAGG
CATTTCCAATGTTGGAGGAGGCTATAGCAAAGAGTTCGTAA
back to top

protein sequence of Gchil1702.t1

>Gchil1702.t1 ID=Gchil1702.t1|Name=Gchil1702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=197bp
MAHTSSEEHFDVLNEKGSPLGFSKARSLVHRDGDWHRSTHVWLLSTRGEV
LVQMRSALKDTFPGRWDVSAAGHISAGGDSLPSAIRELEEELGIHLQEGE
EVEFLTSVKASATGRTDRHGPYVDNEIQDIYVYRPKETVPPNRMILQREE
VDKVEYWPWSEYRERCLNNDEILVPRSEMYKQKAFPMLEEAIAKSS*
back to top

mRNA from alignment at tig00004403_pilon:1838159..1838839+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1702.t1 ID=Gchil1702.t1|Name=Gchil1702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00004403_pilon:1838159..1838839+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCACACTTCTTCCGAAGAGCATTTTGATGTTCTGAACGAAAAAGG
AAGCCCTTTGGGCTTTTCAAAAGCTCGCTCGCTAGTACACAGAGATGGTG
ACTGGCATAGATCCACTCATGTTTGGCTTCTCTCCACTCGAGGCGAAGTT
TTGGTTCAGATGCGCTCAGCCCTGAAAGACACTTTTCCGGTATGTTAAAG
ACTACCGCGAACTTTGTGTAGTTGTTTTTAAGAGACTAACACGATAAAAA
CGAATACGTTCTATATGCTTGTAAAACAGGGTCGATGGGATGTTTCGGCC
GCGGGGCACATTTCCGCAGGCGGGGATAGCTTACCTTCAGCCATCCGGGA
ACTTGAGGAGGAGTTAGGAATACATCTGCAAGAGGGCGAAGAGGTAGAAT
TCTTAACCTCTGTGAAAGCATCAGCAACGGGTAGAACAGATAGACACGGG
CCTTATGTGGATAACGAGATCCAGGATATATATGTCTATAGACCAAAAGA
GACCGTTCCTCCCAATAGAATGATCCTGCAAAGGGAAGAAGTTGATAAAG
TGGAGTACTGGCCCTGGTCGGAATACCGAGAAAGATGTCTCAATAACGAT
GAAATATTGGTGCCCAGAAGTGAAATGTACAAGCAGAAGGCATTTCCAAT
GTTGGAGGAGGCTATAGCAAAGAGTTCGTAA
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:1838159..1838839+

>Gchil1702.t1 ID=Gchil1702.t1|Name=Gchil1702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=591bp|location=Sequence derived from alignment at tig00004403_pilon:1838159..1838839+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCACACTTCTTCCGAAGAGCATTTTGATGTTCTGAACGAAAAAGG
AAGCCCTTTGGGCTTTTCAAAAGCTCGCTCGCTAGTACACAGAGATGGTG
ACTGGCATAGATCCACTCATGTTTGGCTTCTCTCCACTCGAGGCGAAGTT
TTGGTTCAGATGCGCTCAGCCCTGAAAGACACTTTTCCGGGTCGATGGGA
TGTTTCGGCCGCGGGGCACATTTCCGCAGGCGGGGATAGCTTACCTTCAG
CCATCCGGGAACTTGAGGAGGAGTTAGGAATACATCTGCAAGAGGGCGAA
GAGGTAGAATTCTTAACCTCTGTGAAAGCATCAGCAACGGGTAGAACAGA
TAGACACGGGCCTTATGTGGATAACGAGATCCAGGATATATATGTCTATA
GACCAAAAGAGACCGTTCCTCCCAATAGAATGATCCTGCAAAGGGAAGAA
GTTGATAAAGTGGAGTACTGGCCCTGGTCGGAATACCGAGAAAGATGTCT
CAATAACGATGAAATATTGGTGCCCAGAAGTGAAATGTACAAGCAGAAGG
CATTTCCAATGTTGGAGGAGGCTATAGCAAAGAGTTCGTAA
back to top