Gchil1698.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1698.t1
Unique NameGchil1698.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length203
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1825324..1826281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8010.XP_010864937.1
Preferred nameTMED2
PFAMsEMP24_GP25L
Max annot lvl33208|Metazoa
KEGG koko:K20347
KEGG TC9.B.188.1.2
GOsGO:0000003,GO:0000139,GO:0000578,GO:0001568,GO:0001701,GO:0001756,GO:0001838,GO:0001841,GO:0001843,GO:0001890,GO:0001892,GO:0001893,GO:0001944,GO:0001947,GO:0002009,GO:0002790,GO:0003002,GO:0003006,GO:0003007,GO:0003143,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007154,GO:0007267,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007444,GO:0007507,GO:0007565,GO:0008104,GO:0008150,GO:0008565,GO:0008593,GO:0009306,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009799,GO:0009855,GO:0009880,GO:0009887,GO:0009888,GO:0009893,GO:0009948,GO:0009952,GO:0009966,GO:0009987,GO:0010256,GO:0010468,GO:0010604,GO:0010628,GO:0010646,GO:0012505,GO:0012506,GO:0012507,GO:0014020,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016331,GO:0019222,GO:0021915,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030141,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030667,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032525,GO:0032940,GO:0033036,GO:0033116,GO:0034260,GO:0034613,GO:0034622,GO:0035050,GO:0035148,GO:0035220,GO:0035239,GO:0035264,GO:0035282,GO:0035295,GO:0035459,GO:0035964,GO:0036342,GO:0040007,GO:0042175,GO:0042588,GO:0042589,GO:0042886,GO:0043009,GO:0043086,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044092,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045184,GO:0046662,GO:0046903,GO:0046907,GO:0048042,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048207,GO:0048208,GO:0048513,GO:0048518,GO:0048519,GO:0048562,GO:0048568,GO:0048583,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0051179,GO:0051234,GO:0051239,GO:0051336,GO:0051346,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0060135,GO:0060255,GO:0060429,GO:0060562,GO:0060606,GO:0060674,GO:0060711,GO:0060716,GO:0061024,GO:0061053,GO:0061355,GO:0061371,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072175,GO:0072358,GO:0072359,GO:0072657,GO:0072659,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0099503,GO:0198738,GO:1990778,GO:2000241
Evalue2.85e-19
EggNOG OGsKOG1692@1|root,KOG1692@2759|Eukaryota,38HZS@33154|Opisthokonta,3BDBC@33208|Metazoa,3CV3N@33213|Bilateria,47Z3D@7711|Chordata,48VMB@7742|Vertebrata,49YQP@7898|Actinopterygii
DescriptionTransmembrane emp24
COG categoryU
BRITEko00000,ko02000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1698Gchil1698Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1825324..1826281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1698.t1Gchil1698.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1825324..1826281 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1698.t1.stop1Gchil1698.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1825324..1825326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1698.t1.CDS1Gchil1698.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1825324..1825448 -
Gchil1698.t1.CDS2Gchil1698.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1825538..1825645 -
Gchil1698.t1.CDS3Gchil1698.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1825727..1825975 -
Gchil1698.t1.CDS4Gchil1698.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1826155..1826281 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1698.t1.exon1Gchil1698.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1825324..1825448 -
Gchil1698.t1.exon2Gchil1698.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1825538..1825645 -
Gchil1698.t1.exon3Gchil1698.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1825727..1825975 -
Gchil1698.t1.exon4Gchil1698.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1826155..1826281 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1698.t1.intron1Gchil1698.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1825449..1825537 -
Gchil1698.t1.intron2Gchil1698.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1825646..1825726 -
Gchil1698.t1.intron3Gchil1698.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1825976..1826154 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1698.t1.start1Gchil1698.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1826279..1826281 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1698.t1 ID=Gchil1698.t1|Name=Gchil1698.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=203bp
MKSSFLFGSILLAIVLCARPVSALNFKISPKETLCFHEITHKGNKVLAFF
DVLSWGYGAYVNLHVNAPSGREIQKFDAQSEGRVDFVATEDGEHSFCFKN
AYTETEVSFWVNTETDSALSDVAREEHVNDMVYSVEKLNSLVSAARIDLE
AFKAREHHHRETADKNRRRVTLWAVIECVLILAVAGVQIMRIRNFFEHKR
MV*
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spliced messenger RNA

>Gchil1698.t1 ID=Gchil1698.t1|Name=Gchil1698.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=609bp|location=Sequence derived from alignment at tig00004403_pilon:1825324..1826281- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGTTCATTCCTATTCGGTTCGATCCTTCTGGCGATTGTTCTTTG
CGCGAGACCAGTCAGTGCTCTTAACTTCAAGATATCTCCAAAAGAAACTC
TTTGCTTCCATGAAATCACCCACAAAGGGAACAAAGTCCTTGCGTTTTTC
GACGTTCTTTCATGGGGGTATGGCGCCTATGTTAACCTTCATGTAAATGC
GCCAAGCGGGCGTGAGATCCAGAAATTTGACGCACAAAGCGAAGGAAGAG
TCGACTTTGTTGCCACTGAAGATGGTGAGCATAGTTTCTGTTTTAAGAAC
GCGTATACTGAGACGGAAGTGTCATTTTGGGTCAATACTGAAACTGATTC
TGCTTTGTCTGATGTTGCAAGAGAAGAGCACGTGAATGACATGGTGTACA
GCGTTGAAAAACTGAATTCCCTGGTTAGCGCTGCACGGATAGATCTTGAG
GCCTTCAAAGCTAGAGAGCACCATCACCGTGAAACCGCGGATAAGAATAG
AAGAAGAGTCACTTTATGGGCTGTTATAGAATGTGTTCTCATACTTGCTG
TCGCTGGAGTTCAAATTATGCGCATCCGTAACTTCTTCGAGCACAAACGC
ATGGTTTAA
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protein sequence of Gchil1698.t1

>Gchil1698.t1 ID=Gchil1698.t1|Name=Gchil1698.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=203bp
MKSSFLFGSILLAIVLCARPVSALNFKISPKETLCFHEITHKGNKVLAFF
DVLSWGYGAYVNLHVNAPSGREIQKFDAQSEGRVDFVATEDGEHSFCFKN
AYTETEVSFWVNTETDSALSDVAREEHVNDMVYSVEKLNSLVSAARIDLE
AFKAREHHHRETADKNRRRVTLWAVIECVLILAVAGVQIMRIRNFFEHKR
MV*
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mRNA from alignment at tig00004403_pilon:1825324..1826281-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1698.t1 ID=Gchil1698.t1|Name=Gchil1698.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=958bp|location=Sequence derived from alignment at tig00004403_pilon:1825324..1826281- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAGTTCATTCCTATTCGGTTCGATCCTTCTGGCGATTGTTCTTTG
CGCGAGACCAGTCAGTGCTCTTAACTTCAAGATATCTCCAAAAGAAACTC
TTTGCTTCCATGAAATCACCCACAAAGGTAAGAAGTAAATATCCAAGGTG
AATGGCAGCCACTCGAAGCTCAAAGCGAAAACTGGGTGGACGTGGACGTC
TCGAAGATCATTCTTCTTCCTCGAGGTAAACCGTTTCTTTGTGATTGTAT
CCATTTTATGGAACCGACGACTGCGACTAACCATTTTGCCGAGTATGCTA
CCACAGGGAACAAAGTCCTTGCGTTTTTCGACGTTCTTTCATGGGGGTAT
GGCGCCTATGTTAACCTTCATGTAAATGCGCCAAGCGGGCGTGAGATCCA
GAAATTTGACGCACAAAGCGAAGGAAGAGTCGACTTTGTTGCCACTGAAG
ATGGTGAGCATAGTTTCTGTTTTAAGAACGCGTATACTGAGACGGAAGTG
TCATTTTGGGTCAATACTGAAACTGATTCTGCTTTGTCTGATGTTGCAAG
AGAAGGTGAGTTTGTTCTTCTTTTTGGTTGAAGTTCGTCCTCGTTGTGTG
CAGCAACTAACATATTTCCGACCCTCACATCAACAGAGCACGTGAATGAC
ATGGTGTACAGCGTTGAAAAACTGAATTCCCTGGTTAGCGCTGCACGGAT
AGATCTTGAGGCCTTCAAAGCTAGAGAGCACCATCACCGTGAAAGTAAGT
ATTATCCTTGAACTCTACGACTGTTAAGGTGAACAAGTTTTTGCAGAGTA
CACTAACAATGATCACATTTTCTGCTTTGACAGCCGCGGATAAGAATAGA
AGAAGAGTCACTTTATGGGCTGTTATAGAATGTGTTCTCATACTTGCTGT
CGCTGGAGTTCAAATTATGCGCATCCGTAACTTCTTCGAGCACAAACGCA
TGGTTTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1825324..1826281-

>Gchil1698.t1 ID=Gchil1698.t1|Name=Gchil1698.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=609bp|location=Sequence derived from alignment at tig00004403_pilon:1825324..1826281- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAGTTCATTCCTATTCGGTTCGATCCTTCTGGCGATTGTTCTTTG
CGCGAGACCAGTCAGTGCTCTTAACTTCAAGATATCTCCAAAAGAAACTC
TTTGCTTCCATGAAATCACCCACAAAGGGAACAAAGTCCTTGCGTTTTTC
GACGTTCTTTCATGGGGGTATGGCGCCTATGTTAACCTTCATGTAAATGC
GCCAAGCGGGCGTGAGATCCAGAAATTTGACGCACAAAGCGAAGGAAGAG
TCGACTTTGTTGCCACTGAAGATGGTGAGCATAGTTTCTGTTTTAAGAAC
GCGTATACTGAGACGGAAGTGTCATTTTGGGTCAATACTGAAACTGATTC
TGCTTTGTCTGATGTTGCAAGAGAAGAGCACGTGAATGACATGGTGTACA
GCGTTGAAAAACTGAATTCCCTGGTTAGCGCTGCACGGATAGATCTTGAG
GCCTTCAAAGCTAGAGAGCACCATCACCGTGAAACCGCGGATAAGAATAG
AAGAAGAGTCACTTTATGGGCTGTTATAGAATGTGTTCTCATACTTGCTG
TCGCTGGAGTTCAAATTATGCGCATCCGTAACTTCTTCGAGCACAAACGC
ATGGTTTAA
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