Gchil1686.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1686.t1
Unique NameGchil1686.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length731
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1626420..1628985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog269797.Mbar_A0545
PFAMsDUF4062,WD40
Max annot lvl2157|Archaea
Evalue3.57e-09
EggNOG OGsCOG2319@1|root,arCOG02561@2157|Archaea
DescriptionTetratricopeptide repeat
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1686Gchil1686Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1626420..1628985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1686.t1Gchil1686.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1626420..1628985 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1686.t1.stop1Gchil1686.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1626420..1626422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1686.t1.CDS1Gchil1686.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1626420..1626487 -
Gchil1686.t1.CDS2Gchil1686.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1626609..1628170 -
Gchil1686.t1.CDS3Gchil1686.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1628423..1628985 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1686.t1.exon1Gchil1686.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1626420..1626487 -
Gchil1686.t1.exon2Gchil1686.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1626609..1628170 -
Gchil1686.t1.exon3Gchil1686.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1628423..1628985 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1686.t1.intron1Gchil1686.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1626488..1626608 -
Gchil1686.t1.intron2Gchil1686.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1628171..1628422 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1686.t1.start1Gchil1686.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1628983..1628985 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1686.t1 ID=Gchil1686.t1|Name=Gchil1686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=731bp
MSPRQASRPISHAPTAAPTHALHSPSASPPRCFTASPSSRLAPFFTLRTA
TMDPPAVQDLFGVLQKLETTVNRFFEPKDIVQANETKLRQLRSQYRRAND
MIRQLKGLSTPDFVTRARLSRFYDDLQQNSVELNDLQSDIDKPTVRNLVR
RMEKVLKQCETDVKVLFHFLADNVSPTLRDAQNSRQDELSTIIQGIASIV
ERTNGPRLAKQVRASKTLQEASDKASIWFRPHDCLFLVDDIWWLNGIDSS
VFTLLGIMVNERSRLVCTTRDKRFLEHTDKRIEFSEKEAHGELARRMLMR
HAGFGAEHRLDDVNKNAFESILHICQGLPLALGIAGGSVWKYSLEQHADQ
KQNAWSDFHRDLLLKRKDLLDIPVAGYGALTNIVDVSLEVLEMRSERRNY
QKLFRAFCVVQKQQCVPLNMLKNLWDLESLAEVEKVVEMMKDVSLLQVRR
ESGFISVQLHDLILDTAVLKASEEHEAQMFFQFLIHNYIRSETTEDGYWL
RAAWWNTGDDGYLHNNLCRALRNAGYVDELLWLLSKPQWIVRRLQDGGIS
FVEQDLKQGTDVAGTGSTEISDERKHLEIIGKAARMSWGYVNNNPYEAWF
QMHGRLLWYATQCEKTRKFVEEIERSAPRPWAKASVGFLQPAGGALLDTI
PILGGIIGVTYEGDEIVVMERRSKEAVLVARYNLTSGTRNIQNLSVERDS
LDWILDVNSPIMIVPRHETSENKVSDDGKG*
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spliced messenger RNA

>Gchil1686.t1 ID=Gchil1686.t1|Name=Gchil1686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2193bp|location=Sequence derived from alignment at tig00004403_pilon:1626420..1628985- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCGCGACAAGCATCGAGGCCCATATCGCACGCTCCCACCGCTGC
CCCAACGCACGCCTTGCACTCGCCTTCGGCTTCGCCTCCACGATGCTTCA
CTGCATCACCATCCAGCCGACTCGCACCATTTTTTACCCTCCGCACCGCC
ACCATGGATCCTCCGGCGGTTCAGGACCTGTTTGGGGTGCTTCAAAAGCT
CGAGACCACTGTGAACAGGTTCTTCGAACCCAAGGATATAGTCCAAGCTA
ACGAGACGAAGCTTCGCCAACTGCGAAGTCAGTACAGGCGTGCGAATGAT
ATGATTCGACAGCTTAAAGGCTTGTCAACCCCAGACTTCGTAACACGCGC
AAGGTTGTCGCGTTTTTATGACGATTTGCAACAAAACTCCGTCGAACTCA
ACGACTTGCAGTCAGATATCGACAAACCTACGGTGCGAAATTTAGTCCGC
CGAATGGAGAAAGTATTGAAGCAGTGCGAGACGGATGTGAAAGTGTTGTT
CCACTTCCTAGCTGACAATGTCTCTCCGACGCTTAGAGATGCACAGAATT
CGCGCCAAGATGAGCTATCGACGATCATACAGGGTATCGCAAGTATTGTG
GAACGGACAAACGGTCCACGGCTGGCGAAACAGGTAAGAGCTTCCAAAAC
GCTGCAAGAGGCATCGGACAAGGCCTCTATATGGTTCAGACCTCATGACT
GTCTGTTTCTTGTGGATGACATATGGTGGTTGAACGGCATTGATTCCAGT
GTGTTCACCCTACTTGGCATAATGGTGAACGAACGCAGTCGACTGGTGTG
CACCACGAGAGACAAGCGTTTTCTGGAACATACTGATAAGCGGATTGAGT
TTTCAGAGAAAGAAGCCCATGGCGAGTTAGCCAGACGTATGCTGATGAGG
CATGCTGGTTTTGGTGCAGAGCACAGGCTTGACGACGTGAACAAGAATGC
CTTCGAATCTATTCTTCACATATGCCAGGGGCTCCCACTTGCACTTGGCA
TTGCTGGAGGCTCAGTATGGAAGTATTCTCTTGAGCAGCATGCAGATCAA
AAGCAGAATGCATGGTCCGATTTTCATCGAGATCTGTTGTTGAAGCGAAA
AGACTTGCTGGATATCCCTGTGGCCGGATACGGCGCTCTTACGAACATTG
TAGATGTTTCCCTTGAAGTGCTGGAGATGCGGAGTGAACGCAGGAACTAC
CAGAAGCTGTTTCGGGCCTTTTGTGTTGTTCAAAAACAACAGTGTGTTCC
GCTCAACATGCTGAAGAACCTGTGGGACTTGGAGAGCTTGGCTGAAGTTG
AGAAAGTTGTAGAAATGATGAAAGATGTGTCACTCTTGCAAGTGAGGAGG
GAAAGTGGTTTTATATCTGTTCAGCTACACGACTTGATCTTAGACACTGC
TGTTCTAAAGGCATCAGAAGAGCACGAAGCTCAAATGTTCTTTCAATTTT
TAATTCACAACTACATTCGATCTGAGACTACTGAAGACGGGTACTGGTTG
CGAGCAGCGTGGTGGAATACTGGCGATGACGGTTATCTTCACAACAATCT
TTGCAGAGCACTTCGCAATGCAGGATACGTTGATGAATTGCTATGGCTTC
TGTCAAAGCCGCAATGGATCGTGAGGCGTCTGCAAGACGGCGGGATTTCG
TTCGTAGAGCAAGACCTCAAACAAGGAACAGATGTCGCCGGCACGGGCAG
TACCGAGATCTCGGATGAAAGAAAGCATCTGGAAATCATTGGAAAGGCTG
CCCGCATGAGTTGGGGGTATGTTAACAACAATCCGTATGAAGCGTGGTTT
CAGATGCACGGTCGATTGTTGTGGTATGCGACGCAGTGTGAAAAGACTCG
AAAGTTTGTCGAGGAGATAGAGCGTAGTGCACCGAGACCGTGGGCTAAAG
CTTCTGTGGGGTTTTTGCAACCAGCGGGTGGTGCACTGCTGGATACGATC
CCGATCCTTGGAGGTATTATTGGCGTGACCTATGAAGGCGACGAAATTGT
CGTTATGGAGCGTCGTTCTAAGGAAGCTGTGCTGGTTGCGAGGTATAACC
TTACGAGTGGCACTCGCAATATCCAGAACTTGAGCGTCGAAAGAGACAGT
CTGGATTGGATACTAGACGTCAATTCACCGATCATGATTGTGCCTCGACA
CGAGACCTCGGAAAACAAGGTGTCCGACGACGGAAAAGGCTAA
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protein sequence of Gchil1686.t1

>Gchil1686.t1 ID=Gchil1686.t1|Name=Gchil1686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=731bp
MSPRQASRPISHAPTAAPTHALHSPSASPPRCFTASPSSRLAPFFTLRTA
TMDPPAVQDLFGVLQKLETTVNRFFEPKDIVQANETKLRQLRSQYRRAND
MIRQLKGLSTPDFVTRARLSRFYDDLQQNSVELNDLQSDIDKPTVRNLVR
RMEKVLKQCETDVKVLFHFLADNVSPTLRDAQNSRQDELSTIIQGIASIV
ERTNGPRLAKQVRASKTLQEASDKASIWFRPHDCLFLVDDIWWLNGIDSS
VFTLLGIMVNERSRLVCTTRDKRFLEHTDKRIEFSEKEAHGELARRMLMR
HAGFGAEHRLDDVNKNAFESILHICQGLPLALGIAGGSVWKYSLEQHADQ
KQNAWSDFHRDLLLKRKDLLDIPVAGYGALTNIVDVSLEVLEMRSERRNY
QKLFRAFCVVQKQQCVPLNMLKNLWDLESLAEVEKVVEMMKDVSLLQVRR
ESGFISVQLHDLILDTAVLKASEEHEAQMFFQFLIHNYIRSETTEDGYWL
RAAWWNTGDDGYLHNNLCRALRNAGYVDELLWLLSKPQWIVRRLQDGGIS
FVEQDLKQGTDVAGTGSTEISDERKHLEIIGKAARMSWGYVNNNPYEAWF
QMHGRLLWYATQCEKTRKFVEEIERSAPRPWAKASVGFLQPAGGALLDTI
PILGGIIGVTYEGDEIVVMERRSKEAVLVARYNLTSGTRNIQNLSVERDS
LDWILDVNSPIMIVPRHETSENKVSDDGKG*
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mRNA from alignment at tig00004403_pilon:1626420..1628985-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1686.t1 ID=Gchil1686.t1|Name=Gchil1686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2566bp|location=Sequence derived from alignment at tig00004403_pilon:1626420..1628985- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCCGCGACAAGCATCGAGGCCCATATCGCACGCTCCCACCGCTGC
CCCAACGCACGCCTTGCACTCGCCTTCGGCTTCGCCTCCACGATGCTTCA
CTGCATCACCATCCAGCCGACTCGCACCATTTTTTACCCTCCGCACCGCC
ACCATGGATCCTCCGGCGGTTCAGGACCTGTTTGGGGTGCTTCAAAAGCT
CGAGACCACTGTGAACAGGTTCTTCGAACCCAAGGATATAGTCCAAGCTA
ACGAGACGAAGCTTCGCCAACTGCGAAGTCAGTACAGGCGTGCGAATGAT
ATGATTCGACAGCTTAAAGGCTTGTCAACCCCAGACTTCGTAACACGCGC
AAGGTTGTCGCGTTTTTATGACGATTTGCAACAAAACTCCGTCGAACTCA
ACGACTTGCAGTCAGATATCGACAAACCTACGGTGCGAAATTTAGTCCGC
CGAATGGAGAAAGTATTGAAGCAGTGCGAGACGGATGTGAAAGTGTTGTT
CCACTTCCTAGCTGACAATGTCTCTCCGACGCTTAGAGATGCACAGAATT
CGCGCCAAGATGAGTACTTACCGGATAACAACGTGCCACCCAACCCACCC
CGACTGACTCTGGACTACAGCACTACCACCACATGCGAGGGAAGACTGAA
AAACGCAATTCTCGACAAGTCCGAGAATCGCATTGTTGCTGTTCTCGCCA
CCGGGAGAGGTAGCGTTGGCAAAACATGTGCTCTGCGAGGCCTTGCGTCC
GACAAAGAAGTCAAGAAACGATTTCCTGGTGGTACTCTTTACATTCAACT
TGGCAAGGATGCCAGGCTATCGACGATCATACAGGGTATCGCAAGTATTG
TGGAACGGACAAACGGTCCACGGCTGGCGAAACAGGTAAGAGCTTCCAAA
ACGCTGCAAGAGGCATCGGACAAGGCCTCTATATGGTTCAGACCTCATGA
CTGTCTGTTTCTTGTGGATGACATATGGTGGTTGAACGGCATTGATTCCA
GTGTGTTCACCCTACTTGGCATAATGGTGAACGAACGCAGTCGACTGGTG
TGCACCACGAGAGACAAGCGTTTTCTGGAACATACTGATAAGCGGATTGA
GTTTTCAGAGAAAGAAGCCCATGGCGAGTTAGCCAGACGTATGCTGATGA
GGCATGCTGGTTTTGGTGCAGAGCACAGGCTTGACGACGTGAACAAGAAT
GCCTTCGAATCTATTCTTCACATATGCCAGGGGCTCCCACTTGCACTTGG
CATTGCTGGAGGCTCAGTATGGAAGTATTCTCTTGAGCAGCATGCAGATC
AAAAGCAGAATGCATGGTCCGATTTTCATCGAGATCTGTTGTTGAAGCGA
AAAGACTTGCTGGATATCCCTGTGGCCGGATACGGCGCTCTTACGAACAT
TGTAGATGTTTCCCTTGAAGTGCTGGAGATGCGGAGTGAACGCAGGAACT
ACCAGAAGCTGTTTCGGGCCTTTTGTGTTGTTCAAAAACAACAGTGTGTT
CCGCTCAACATGCTGAAGAACCTGTGGGACTTGGAGAGCTTGGCTGAAGT
TGAGAAAGTTGTAGAAATGATGAAAGATGTGTCACTCTTGCAAGTGAGGA
GGGAAAGTGGTTTTATATCTGTTCAGCTACACGACTTGATCTTAGACACT
GCTGTTCTAAAGGCATCAGAAGAGCACGAAGCTCAAATGTTCTTTCAATT
TTTAATTCACAACTACATTCGATCTGAGACTACTGAAGACGGGTACTGGT
TGCGAGCAGCGTGGTGGAATACTGGCGATGACGGTTATCTTCACAACAAT
CTTTGCAGAGCACTTCGCAATGCAGGATACGTTGATGAATTGCTATGGCT
TCTGTCAAAGCCGCAATGGATCGTGAGGCGTCTGCAAGACGGCGGGATTT
CGTTCGTAGAGCAAGACCTCAAACAAGGAACAGATGTCGCCGGCACGGGC
AGTACCGAGATCTCGGATGAAAGAAAGCATCTGGAAATCATTGGAAAGGC
TGCCCGCATGAGTTGGGGGTATGTTAACAACAATCCGTATGAAGCGTGGT
TTCAGATGCACGGTCGATTGTTGTGGTATGCGACGCAGTGTGAAAAGACT
CGAAAGTTTGTCGAGGAGATAGAGCGTAGTGCACCGAGACCGTGGGCTAA
AGCTTCTGTGGGGTTTTTGCAACCAGCGGGTGGTGCACTGCTGGATACGA
TCCCGATCCTTGGAGGTATTATTGGCGTGACCTATGAAGGCGACGAAATT
GTCGTTATGGAGCGTCGTTCTAAGGAAGCTGTGCTGGTTGCGAGGTATAA
CCTTACGAGTGGCACTCGCAATATCCAGAACTTGAGCGTCGAAAGAGACA
GTCTGGATTGGATACTAGACGTCAATTGTTGCGCCTTTTCACTGGACCAA
AGGAGGATGGCGACGGGACACGAGAACGGAGAGGTTGTCGTGTGGGATAC
CGAAACAGGTGCGATGATGCGTATCCTCGGACAACAATGTGACCGAAGCA
CCGATCATGATTGTGCCTCGACACGAGACCTCGGAAAACAAGGTGTCCGA
CGACGGAAAAGGCTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1626420..1628985-

>Gchil1686.t1 ID=Gchil1686.t1|Name=Gchil1686.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2193bp|location=Sequence derived from alignment at tig00004403_pilon:1626420..1628985- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCCGCGACAAGCATCGAGGCCCATATCGCACGCTCCCACCGCTGC
CCCAACGCACGCCTTGCACTCGCCTTCGGCTTCGCCTCCACGATGCTTCA
CTGCATCACCATCCAGCCGACTCGCACCATTTTTTACCCTCCGCACCGCC
ACCATGGATCCTCCGGCGGTTCAGGACCTGTTTGGGGTGCTTCAAAAGCT
CGAGACCACTGTGAACAGGTTCTTCGAACCCAAGGATATAGTCCAAGCTA
ACGAGACGAAGCTTCGCCAACTGCGAAGTCAGTACAGGCGTGCGAATGAT
ATGATTCGACAGCTTAAAGGCTTGTCAACCCCAGACTTCGTAACACGCGC
AAGGTTGTCGCGTTTTTATGACGATTTGCAACAAAACTCCGTCGAACTCA
ACGACTTGCAGTCAGATATCGACAAACCTACGGTGCGAAATTTAGTCCGC
CGAATGGAGAAAGTATTGAAGCAGTGCGAGACGGATGTGAAAGTGTTGTT
CCACTTCCTAGCTGACAATGTCTCTCCGACGCTTAGAGATGCACAGAATT
CGCGCCAAGATGAGCTATCGACGATCATACAGGGTATCGCAAGTATTGTG
GAACGGACAAACGGTCCACGGCTGGCGAAACAGGTAAGAGCTTCCAAAAC
GCTGCAAGAGGCATCGGACAAGGCCTCTATATGGTTCAGACCTCATGACT
GTCTGTTTCTTGTGGATGACATATGGTGGTTGAACGGCATTGATTCCAGT
GTGTTCACCCTACTTGGCATAATGGTGAACGAACGCAGTCGACTGGTGTG
CACCACGAGAGACAAGCGTTTTCTGGAACATACTGATAAGCGGATTGAGT
TTTCAGAGAAAGAAGCCCATGGCGAGTTAGCCAGACGTATGCTGATGAGG
CATGCTGGTTTTGGTGCAGAGCACAGGCTTGACGACGTGAACAAGAATGC
CTTCGAATCTATTCTTCACATATGCCAGGGGCTCCCACTTGCACTTGGCA
TTGCTGGAGGCTCAGTATGGAAGTATTCTCTTGAGCAGCATGCAGATCAA
AAGCAGAATGCATGGTCCGATTTTCATCGAGATCTGTTGTTGAAGCGAAA
AGACTTGCTGGATATCCCTGTGGCCGGATACGGCGCTCTTACGAACATTG
TAGATGTTTCCCTTGAAGTGCTGGAGATGCGGAGTGAACGCAGGAACTAC
CAGAAGCTGTTTCGGGCCTTTTGTGTTGTTCAAAAACAACAGTGTGTTCC
GCTCAACATGCTGAAGAACCTGTGGGACTTGGAGAGCTTGGCTGAAGTTG
AGAAAGTTGTAGAAATGATGAAAGATGTGTCACTCTTGCAAGTGAGGAGG
GAAAGTGGTTTTATATCTGTTCAGCTACACGACTTGATCTTAGACACTGC
TGTTCTAAAGGCATCAGAAGAGCACGAAGCTCAAATGTTCTTTCAATTTT
TAATTCACAACTACATTCGATCTGAGACTACTGAAGACGGGTACTGGTTG
CGAGCAGCGTGGTGGAATACTGGCGATGACGGTTATCTTCACAACAATCT
TTGCAGAGCACTTCGCAATGCAGGATACGTTGATGAATTGCTATGGCTTC
TGTCAAAGCCGCAATGGATCGTGAGGCGTCTGCAAGACGGCGGGATTTCG
TTCGTAGAGCAAGACCTCAAACAAGGAACAGATGTCGCCGGCACGGGCAG
TACCGAGATCTCGGATGAAAGAAAGCATCTGGAAATCATTGGAAAGGCTG
CCCGCATGAGTTGGGGGTATGTTAACAACAATCCGTATGAAGCGTGGTTT
CAGATGCACGGTCGATTGTTGTGGTATGCGACGCAGTGTGAAAAGACTCG
AAAGTTTGTCGAGGAGATAGAGCGTAGTGCACCGAGACCGTGGGCTAAAG
CTTCTGTGGGGTTTTTGCAACCAGCGGGTGGTGCACTGCTGGATACGATC
CCGATCCTTGGAGGTATTATTGGCGTGACCTATGAAGGCGACGAAATTGT
CGTTATGGAGCGTCGTTCTAAGGAAGCTGTGCTGGTTGCGAGGTATAACC
TTACGAGTGGCACTCGCAATATCCAGAACTTGAGCGTCGAAAGAGACAGT
CTGGATTGGATACTAGACGTCAATTCACCGATCATGATTGTGCCTCGACA
CGAGACCTCGGAAAACAAGGTGTCCGACGACGGAAAAGGCTAA
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