Gchil1668.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1668.t1
Unique Name	Gchil1668.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	468

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1449424..1450827 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44689.DDB0220702
PFAMs	Pkinase
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K04688
KEGG Pathway	ko01521,ko01522,ko04012,ko04066,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04350,ko04371,ko04666,ko04714,ko04910,ko04931,ko05165,ko05200,ko05205,ko05210,ko05212,ko05221,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04012,map04066,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04350,map04371,map04666,map04714,map04910,map04931,map05165,map05200,map05205,map05210,map05212,map05221,map05224,map05225,map05226,map05231
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue	1.57e-84
EggNOG OGs	KOG0598@1\|root,KOG0598@2759\|Eukaryota,3XGE5@554915\|Amoebozoa
EC	2.7.11.1
Description	Haspin like kinase domain
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1668	Gchil1668	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1449424..1450827 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1668.t1.start1	Gchil1668.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1449424..1449426 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1668.t1.CDS1	Gchil1668.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1449424..1450827 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1668.t1.exon1	Gchil1668.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1449424..1450827 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1668.t1.stop1	Gchil1668.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1450825..1450827 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1668.t1	Gchil1668.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1449424..1450827 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1449424..1450827+
coding sequence from alignment at tig00004403_pilon:1449424..1450827+

mRNA sequence

>Gchil1668.t1 ID=Gchil1668.t1|Name=Gchil1668.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=468bp
MHLELVPPLGSDLTLNDFPNDFLTPASSPPPSTPPLLRMQPLASPPSLGR
RRLDAFHIVCLIGKGGFGKVFMVRHKATAAVYAMKVMEKDALISRKAVQD
AHTERNILALVGQYDAPFIIRLHVAFQTSKRVYLVMDFASGGELMFHLRR
EAMLSETQAKFYAAELLIALETLHNMHIVHRDIKPENVLLDSEGHLILTD
FGLAKELSDDGEQTHSWCGSEDYMAPEIITRDAHCGKAADYWAYGIFIYD
CLCGQPPFSPLHEKGKLSRKRLHERIVRCKYKLPKYLTSECQSLIRKFLT
KDVTKRLTDPEAIRRHAWFRDVDWEAIRNRRAVPPIIPSQSSPTACFSPS
LTKAACAAPVSPPNVYLEARSSPIMIANSTQAAGSDSMWQGFSFVAPGME
VHFELAPAVVMEKGDGGGGGAASAAAFEGEMERTQQCDADVEESLVAELA
EFSIDAASAVEIVDGDV*

spliced messenger RNA

>Gchil1668.t1 ID=Gchil1668.t1|Name=Gchil1668.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00004403_pilon:1449424..1450827+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTGGAGCTTGTTCCGCCCTTGGGCTCCGACCTAACTCTTAACGA
TTTCCCCAATGACTTTCTCACGCCGGCCTCGTCGCCGCCTCCATCCACCC
CGCCCTTACTGCGCATGCAGCCGTTAGCCAGTCCACCCTCGCTCGGCCGC
CGCCGTTTAGATGCCTTTCACATTGTGTGCCTCATCGGAAAGGGCGGCTT
TGGCAAAGTGTTCATGGTGCGTCACAAAGCCACCGCCGCCGTCTACGCCA
TGAAGGTCATGGAGAAGGACGCTTTAATTAGTCGAAAGGCCGTTCAAGAC
GCCCATACCGAGCGCAACATCCTCGCCCTCGTCGGTCAGTATGACGCCCC
TTTTATAATTCGTCTTCACGTTGCCTTCCAAACCTCCAAGAGAGTGTATC
TGGTCATGGACTTTGCGTCCGGCGGCGAACTCATGTTTCACCTACGCCGA
GAAGCCATGCTGAGCGAGACGCAGGCCAAGTTTTACGCTGCCGAGCTTCT
AATTGCGCTCGAAACTTTGCATAACATGCACATTGTACATAGAGATATCA
AACCGGAAAATGTTCTATTAGACAGCGAGGGTCATCTCATTCTAACCGAC
TTTGGGCTTGCGAAGGAACTCTCAGATGACGGCGAGCAGACTCACTCGTG
GTGCGGCTCGGAGGACTACATGGCTCCCGAAATCATCACGCGCGACGCAC
ACTGCGGCAAAGCGGCCGACTACTGGGCATATGGCATTTTCATTTACGAC
TGCCTGTGTGGCCAGCCGCCGTTTTCACCACTACACGAAAAGGGAAAGCT
TAGTCGCAAGCGATTGCACGAGCGCATCGTGCGATGCAAATACAAGCTTC
CCAAGTACCTGACGTCGGAGTGCCAATCGCTGATTCGCAAGTTTTTGACC
AAGGACGTGACGAAGCGACTGACGGACCCTGAGGCAATTCGCAGACACGC
GTGGTTCCGCGATGTTGACTGGGAGGCCATTCGCAACCGAAGAGCAGTGC
CACCCATCATTCCGTCGCAATCTTCGCCGACGGCGTGTTTCTCACCGTCT
CTAACCAAAGCTGCGTGTGCAGCGCCTGTGTCGCCGCCTAATGTGTACCT
TGAGGCCAGGAGCTCTCCGATTATGATTGCGAACAGCACGCAAGCGGCGG
GGAGCGATAGCATGTGGCAGGGGTTCTCGTTCGTGGCACCGGGTATGGAA
GTGCATTTCGAGCTGGCGCCGGCGGTGGTAATGGAAAAAGGCGACGGCGG
GGGTGGCGGGGCCGCCAGCGCGGCCGCTTTCGAAGGGGAGATGGAGCGCA
CGCAGCAGTGCGATGCGGACGTGGAGGAATCACTTGTGGCAGAGCTTGCG
GAGTTTTCGATAGATGCTGCGAGCGCCGTTGAGATTGTGGACGGTGACGT
GTAA

protein sequence of Gchil1668.t1

>Gchil1668.t1 ID=Gchil1668.t1|Name=Gchil1668.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=468bp
MHLELVPPLGSDLTLNDFPNDFLTPASSPPPSTPPLLRMQPLASPPSLGR
RRLDAFHIVCLIGKGGFGKVFMVRHKATAAVYAMKVMEKDALISRKAVQD
AHTERNILALVGQYDAPFIIRLHVAFQTSKRVYLVMDFASGGELMFHLRR
EAMLSETQAKFYAAELLIALETLHNMHIVHRDIKPENVLLDSEGHLILTD
FGLAKELSDDGEQTHSWCGSEDYMAPEIITRDAHCGKAADYWAYGIFIYD
CLCGQPPFSPLHEKGKLSRKRLHERIVRCKYKLPKYLTSECQSLIRKFLT
KDVTKRLTDPEAIRRHAWFRDVDWEAIRNRRAVPPIIPSQSSPTACFSPS
LTKAACAAPVSPPNVYLEARSSPIMIANSTQAAGSDSMWQGFSFVAPGME
VHFELAPAVVMEKGDGGGGGAASAAAFEGEMERTQQCDADVEESLVAELA
EFSIDAASAVEIVDGDV*

mRNA from alignment at tig00004403_pilon:1449424..1450827+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1668.t1 ID=Gchil1668.t1|Name=Gchil1668.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00004403_pilon:1449424..1450827+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACCTGGAGCTTGTTCCGCCCTTGGGCTCCGACCTAACTCTTAACGA
TTTCCCCAATGACTTTCTCACGCCGGCCTCGTCGCCGCCTCCATCCACCC
CGCCCTTACTGCGCATGCAGCCGTTAGCCAGTCCACCCTCGCTCGGCCGC
CGCCGTTTAGATGCCTTTCACATTGTGTGCCTCATCGGAAAGGGCGGCTT
TGGCAAAGTGTTCATGGTGCGTCACAAAGCCACCGCCGCCGTCTACGCCA
TGAAGGTCATGGAGAAGGACGCTTTAATTAGTCGAAAGGCCGTTCAAGAC
GCCCATACCGAGCGCAACATCCTCGCCCTCGTCGGTCAGTATGACGCCCC
TTTTATAATTCGTCTTCACGTTGCCTTCCAAACCTCCAAGAGAGTGTATC
TGGTCATGGACTTTGCGTCCGGCGGCGAACTCATGTTTCACCTACGCCGA
GAAGCCATGCTGAGCGAGACGCAGGCCAAGTTTTACGCTGCCGAGCTTCT
AATTGCGCTCGAAACTTTGCATAACATGCACATTGTACATAGAGATATCA
AACCGGAAAATGTTCTATTAGACAGCGAGGGTCATCTCATTCTAACCGAC
TTTGGGCTTGCGAAGGAACTCTCAGATGACGGCGAGCAGACTCACTCGTG
GTGCGGCTCGGAGGACTACATGGCTCCCGAAATCATCACGCGCGACGCAC
ACTGCGGCAAAGCGGCCGACTACTGGGCATATGGCATTTTCATTTACGAC
TGCCTGTGTGGCCAGCCGCCGTTTTCACCACTACACGAAAAGGGAAAGCT
TAGTCGCAAGCGATTGCACGAGCGCATCGTGCGATGCAAATACAAGCTTC
CCAAGTACCTGACGTCGGAGTGCCAATCGCTGATTCGCAAGTTTTTGACC
AAGGACGTGACGAAGCGACTGACGGACCCTGAGGCAATTCGCAGACACGC
GTGGTTCCGCGATGTTGACTGGGAGGCCATTCGCAACCGAAGAGCAGTGC
CACCCATCATTCCGTCGCAATCTTCGCCGACGGCGTGTTTCTCACCGTCT
CTAACCAAAGCTGCGTGTGCAGCGCCTGTGTCGCCGCCTAATGTGTACCT
TGAGGCCAGGAGCTCTCCGATTATGATTGCGAACAGCACGCAAGCGGCGG
GGAGCGATAGCATGTGGCAGGGGTTCTCGTTCGTGGCACCGGGTATGGAA
GTGCATTTCGAGCTGGCGCCGGCGGTGGTAATGGAAAAAGGCGACGGCGG
GGGTGGCGGGGCCGCCAGCGCGGCCGCTTTCGAAGGGGAGATGGAGCGCA
CGCAGCAGTGCGATGCGGACGTGGAGGAATCACTTGTGGCAGAGCTTGCG
GAGTTTTCGATAGATGCTGCGAGCGCCGTTGAGATTGTGGACGGTGACGT
GTAA

Coding sequence (CDS) from alignment at tig00004403_pilon:1449424..1450827+

>Gchil1668.t1 ID=Gchil1668.t1|Name=Gchil1668.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00004403_pilon:1449424..1450827+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACCTGGAGCTTGTTCCGCCCTTGGGCTCCGACCTAACTCTTAACGA
TTTCCCCAATGACTTTCTCACGCCGGCCTCGTCGCCGCCTCCATCCACCC
CGCCCTTACTGCGCATGCAGCCGTTAGCCAGTCCACCCTCGCTCGGCCGC
CGCCGTTTAGATGCCTTTCACATTGTGTGCCTCATCGGAAAGGGCGGCTT
TGGCAAAGTGTTCATGGTGCGTCACAAAGCCACCGCCGCCGTCTACGCCA
TGAAGGTCATGGAGAAGGACGCTTTAATTAGTCGAAAGGCCGTTCAAGAC
GCCCATACCGAGCGCAACATCCTCGCCCTCGTCGGTCAGTATGACGCCCC
TTTTATAATTCGTCTTCACGTTGCCTTCCAAACCTCCAAGAGAGTGTATC
TGGTCATGGACTTTGCGTCCGGCGGCGAACTCATGTTTCACCTACGCCGA
GAAGCCATGCTGAGCGAGACGCAGGCCAAGTTTTACGCTGCCGAGCTTCT
AATTGCGCTCGAAACTTTGCATAACATGCACATTGTACATAGAGATATCA
AACCGGAAAATGTTCTATTAGACAGCGAGGGTCATCTCATTCTAACCGAC
TTTGGGCTTGCGAAGGAACTCTCAGATGACGGCGAGCAGACTCACTCGTG
GTGCGGCTCGGAGGACTACATGGCTCCCGAAATCATCACGCGCGACGCAC
ACTGCGGCAAAGCGGCCGACTACTGGGCATATGGCATTTTCATTTACGAC
TGCCTGTGTGGCCAGCCGCCGTTTTCACCACTACACGAAAAGGGAAAGCT
TAGTCGCAAGCGATTGCACGAGCGCATCGTGCGATGCAAATACAAGCTTC
CCAAGTACCTGACGTCGGAGTGCCAATCGCTGATTCGCAAGTTTTTGACC
AAGGACGTGACGAAGCGACTGACGGACCCTGAGGCAATTCGCAGACACGC
GTGGTTCCGCGATGTTGACTGGGAGGCCATTCGCAACCGAAGAGCAGTGC
CACCCATCATTCCGTCGCAATCTTCGCCGACGGCGTGTTTCTCACCGTCT
CTAACCAAAGCTGCGTGTGCAGCGCCTGTGTCGCCGCCTAATGTGTACCT
TGAGGCCAGGAGCTCTCCGATTATGATTGCGAACAGCACGCAAGCGGCGG
GGAGCGATAGCATGTGGCAGGGGTTCTCGTTCGTGGCACCGGGTATGGAA
GTGCATTTCGAGCTGGCGCCGGCGGTGGTAATGGAAAAAGGCGACGGCGG
GGGTGGCGGGGCCGCCAGCGCGGCCGCTTTCGAAGGGGAGATGGAGCGCA
CGCAGCAGTGCGATGCGGACGTGGAGGAATCACTTGTGGCAGAGCTTGCG
GAGTTTTCGATAGATGCTGCGAGCGCCGTTGAGATTGTGGACGGTGACGT
GTAA