Gchil1646.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1646.t1
Unique NameGchil1646.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1398829..1399510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1646Gchil1646Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1398829..1399510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1646.t1Gchil1646.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1398829..1399510 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1646.t1.start1Gchil1646.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1398829..1398831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1646.t1.CDS1Gchil1646.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1398829..1399102 +
Gchil1646.t1.CDS2Gchil1646.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1399227..1399510 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1646.t1.exon1Gchil1646.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1398829..1399102 +
Gchil1646.t1.exon2Gchil1646.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1399227..1399510 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1646.t1.intron1Gchil1646.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1399103..1399226 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1646.t1.stop1Gchil1646.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1399508..1399510 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1646.t1 ID=Gchil1646.t1|Name=Gchil1646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=186bp
MSFLKCCVGADPRPPPENVRPVSSSHRRSAAAAAAAYATGASGNKKKMKH
PTEVFFDPTKPDGQLSSVTDPPTSNRDHSDPKKKKEHKDRSAHQKESKKA
APANDRAELELPDNNGLTRGQNFMKVEKWLRSSCKHEQIDITPKQITNIE
DGPTDAPDAAAEPPSEKDRLPHAMVNHHPTTNPSR*
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spliced messenger RNA

>Gchil1646.t1 ID=Gchil1646.t1|Name=Gchil1646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00004403_pilon:1398829..1399510+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTCCTCAAATGTTGCGTCGGCGCCGATCCGCGGCCCCCTCCAGA
AAATGTGCGTCCGGTCTCCTCCTCACATcgccgaagcgccgccgctgctg
ccgccgcGTATGCCACTGGAGCCAGTGGCAACAAGAAGAAGATGAAGCAC
CCCACTGAGGTCTTTTTCGACCCCACCAAGCCGGACGGTCAGCTTAGCTC
TGTAACCGATCCCCCCACTTCAAACCGTGACCATTCTGACCCAAAGAAGA
AGAAGGAACACAAGGATCGCTCAGCTCATCAGAAGGAATCAAAAAAAGCA
GCTCCAGCCAATGACCGCGCGGAGCTAGAGCTTCCGGATAACAACGGTCT
TACTCGCGGTCAAAACTTCATGAAGGTAGAAAAGTGGCTACGCTCGTCGT
GTAAGCACGAGCAGATAGACATAACTCCCAAGCAGATCACAAATATCGAA
GATGGTCCCACTGATGCCCCTGATGCCGCTGCCGAACCGCCATCGGAGAA
GGACAGACTTCCGCATGCGATGGTCAACCATCACCCCACCACAAATCCTT
CTCGATAA
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protein sequence of Gchil1646.t1

>Gchil1646.t1 ID=Gchil1646.t1|Name=Gchil1646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=186bp
MSFLKCCVGADPRPPPENVRPVSSSHRRSAAAAAAAYATGASGNKKKMKH
PTEVFFDPTKPDGQLSSVTDPPTSNRDHSDPKKKKEHKDRSAHQKESKKA
APANDRAELELPDNNGLTRGQNFMKVEKWLRSSCKHEQIDITPKQITNIE
DGPTDAPDAAAEPPSEKDRLPHAMVNHHPTTNPSR*
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mRNA from alignment at tig00004403_pilon:1398829..1399510+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1646.t1 ID=Gchil1646.t1|Name=Gchil1646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=682bp|location=Sequence derived from alignment at tig00004403_pilon:1398829..1399510+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTCCTCAAATGTTGCGTCGGCGCCGATCCGCGGCCCCCTCCAGA
AAATGTGCGTCCGGTCTCCTCCTCACATcgccgaagcgccgccgctgctg
ccgccgcGTATGCCACTGGAGCCAGTGGCAACAAGAAGAAGATGAAGCAC
CCCACTGAGGTCTTTTTCGACCCCACCAAGCCGGACGGTCAGCTTAGCTC
TGTAACCGATCCCCCCACTTCAAACCGTGACCATTCTGACCCAAAGAAGA
AGAAGGAACACAAGGATCGCTCAGGTATGTTTTCATCTTCTTCCTTCCCT
TTTACGCTTTGAACCCTTGTTTCTCACCATTGTTATGCCCTTTCATTTTG
CATTACCTTTGCCTCTTTCTTGGCGTACACCTACCATTCATTACAAAGCT
CATCAGAAGGAATCAAAAAAAGCAGCTCCAGCCAATGACCGCGCGGAGCT
AGAGCTTCCGGATAACAACGGTCTTACTCGCGGTCAAAACTTCATGAAGG
TAGAAAAGTGGCTACGCTCGTCGTGTAAGCACGAGCAGATAGACATAACT
CCCAAGCAGATCACAAATATCGAAGATGGTCCCACTGATGCCCCTGATGC
CGCTGCCGAACCGCCATCGGAGAAGGACAGACTTCCGCATGCGATGGTCA
ACCATCACCCCACCACAAATCCTTCTCGATAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1398829..1399510+

>Gchil1646.t1 ID=Gchil1646.t1|Name=Gchil1646.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00004403_pilon:1398829..1399510+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTCCTCAAATGTTGCGTCGGCGCCGATCCGCGGCCCCCTCCAGA
AAATGTGCGTCCGGTCTCCTCCTCACATcgccgaagcgccgccgctgctg
ccgccgcGTATGCCACTGGAGCCAGTGGCAACAAGAAGAAGATGAAGCAC
CCCACTGAGGTCTTTTTCGACCCCACCAAGCCGGACGGTCAGCTTAGCTC
TGTAACCGATCCCCCCACTTCAAACCGTGACCATTCTGACCCAAAGAAGA
AGAAGGAACACAAGGATCGCTCAGCTCATCAGAAGGAATCAAAAAAAGCA
GCTCCAGCCAATGACCGCGCGGAGCTAGAGCTTCCGGATAACAACGGTCT
TACTCGCGGTCAAAACTTCATGAAGGTAGAAAAGTGGCTACGCTCGTCGT
GTAAGCACGAGCAGATAGACATAACTCCCAAGCAGATCACAAATATCGAA
GATGGTCCCACTGATGCCCCTGATGCCGCTGCCGAACCGCCATCGGAGAA
GGACAGACTTCCGCATGCGATGGTCAACCATCACCCCACCACAAATCCTT
CTCGATAA
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