Gchil1635.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1635.t1
Unique NameGchil1635.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length582
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1242435..1244180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702540.1
PFAMsWD40
Max annot lvl2759|Eukaryota
Evalue1.69e-132
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
DescriptionWD repeat-containing protein
COG categoryB
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1635Gchil1635Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1242435..1244180 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1635.t1.stop1Gchil1635.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1242435..1242437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1635.t1.CDS1Gchil1635.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1242435..1244180 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1635.t1.exon1Gchil1635.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1242435..1244180 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1635.t1.start1Gchil1635.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1244178..1244180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1635.t1Gchil1635.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1242435..1244180 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1635.t1 ID=Gchil1635.t1|Name=Gchil1635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp
MDARFIDRALRAAVLDHCVFDAEDSNIKLDIVQAIIQYLHDEGYHDASNA
VQHETNVKINNAASKRSQLRRMKSAILDGDWQEVEHLLSRTTFKSMKAFK
FAVHKQQFLELIDHQERQKAFSILQRRLKELEAYARTADEFRDMCYLLTC
KSVNDAPSFRHWDGVASSRAALVEQYSRLLEFDIFRRDGCLNDENLIEAA
DIPPTRLVHLLQQALAFQIGSSRHAPKLPPRIGTLLEDYESVVIPNKLQR
AFVGHTANVKCLTFVGEEGDAVASGSSDNTVRIWDMNSGSQKRILRGHTS
RIWDVSATRNGKLLASASGDGSIRLWDTATLSDVHDAKEWAAKRHEQSVG
RLRVNGNMDGGSADMCRAVLQGHAHDVYAVRMQARGGAVASGGYDRLVRF
YDTETQTLLKSFGGHKSSISSVGFNARGNLIVTGSKDSSIKFWDVVSGLC
VRTLSAHLGEVTSVEINQSGSLMVSSSKDNSNRLWDIRMTKVVKRFKGHQ
NTSKNFVRSVFGPRESVVIGGSEDGHVYIWDVDSSEVLQKLGAGGGTVYD
VEWNARRSVLASCAHDGVVSVWCFDEAQHQE*
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spliced messenger RNA

>Gchil1635.t1 ID=Gchil1635.t1|Name=Gchil1635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00004403_pilon:1242435..1244180- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCGCGTTTCATCGACCGTGCGTTGCGCGCCGCCGTGCTCGATCA
CTGTGTCTTCGACGCCGAAGACTCTAACATCAAGCTCGACATTGTGCAGG
CTATCATCCAGTATTTGCACGACGAGGGCTACCATGACGCCTCCAACGCC
GTGCAACATGAGACTAACGTTAAGATCAACAATGCCGCCTCCAAGCGTTC
GCAGTTGCGCCGCATGAAGAGCGCCATTCTGGACGGCGACTGGCAGGAGG
TGGAGCATCTGCTTTCGCGCACCACCTTCAAGTCCATGAAGGCCTTCAAA
TTTGCCGTGCACAAGCAGCAATTCCTCGAGCTCATCGACCACCAAGAGCG
TCAGAAGGCCTTCTCCATTCTTCAGCGCCGCCTCAAGGAGCTCGAGGCGT
ACGCGCGCACAGCCGATGAGTTTCGAGACATGTGCTATCTGCTCACGTGC
AAATCAGTCAACGATGCGCCCTCGTTCCGCCACTGGGATGGAGTTGCCTC
AAGCAGGGCCGCCCTCGTCGAGCAGTACTCCCGACTGCTCGAATTCGACA
TCTTCCGTCGAGATGGTTGTCTCAACGACGAAAACCTGATAGAAGCCGCC
GATATCCCGCCCACCAGGCTCGTGCACCTGCTTCAACAAGCACTGGCCTT
TCAGATTGGCTCGTCCCGCCACGCCCCAAAGCTTCCGCCACGAATCGGCA
CGCTGCTGGAGGACTACGAAAGCGTGGTGATTCCCAACAAGCTGCAGCGC
GCCTTCGTGGGGCACACCGCAAACGTCAAGTGCCTCACCTTTGTCGGCGA
GGAAGGAGACGCCGTGGCAAGCGGCTCAAGTGACAACACCGTGCGCATCT
GGGATATGAATAGCGGCTCGCAAAAGCGAATTCTACGCGGGCATACGTCG
CGAATTTGGGACGTGAGCGCAACCAGAAATGGAAAACTGCTGGCAAGTGC
CAGTGGCGACGGTAGCATTCGCCTGTGGGACACGGCCACGCTTTCGGATG
TACATGACGCCAAGGAATGGGCCGCGAAAAGACATGAGCAGTCGGTTGGC
AGACTGCGAGTCAATGGAAACATGGACGGCGGCAGTGCTGATATGTGTCG
CGCTGTGTTGCAAGGTCACGCGCATGATGTGTACGCTGTGAGAATGCAGG
CTCGGGGAGGCGCCGTTGCTAGCGGTGGTTATGACAGATTGGTGCGTTTT
TATGATACAGAGACGCAAACGCTGTTGAAAAGCTTTGGCGGGCACAAGAG
CTCGATAAGCAGTGTGGGCTTCAACGCCAGAGGCAATTTGATTGTGACTG
GCAGCAAAGATTCGAGCATCAAGTTCTGGGATGTGGTGAGTGGGCTGTGC
GTGCGGACGCTGAGCGCACACTTGGGCGAGGTGACGTCTGTGGAAATCAA
CCAGTCGGGGTCGCTGATGGTGTCGAGCTCAAAAGACAACTCGAATCGAC
TGTGGGATATACGGATGACCAAGGTTGTGAAGCGGTTCAAGGGACACCAG
AATACAAGCAAAAACTTTGTGCGAAGCGTGTTTGGGCCTCGGGAGAGTGT
GGTAATCGGGGGGAGCGAGGATGGGCATGTGTACATATGGGATGTGGATA
GCAGCGAGGTGTTGCAAAAGCTGGGGGCGGGCGGGGGCACAGTGTACGAC
GTGGAGTGGAATGCGAGGCGGAGCGTGTTGGCGAGCTGTGCGCACGACGG
GGTTGTGAGCGTGTGGTGTTTTGACGAGGCGCAGCATCAAGAGTGA
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protein sequence of Gchil1635.t1

>Gchil1635.t1 ID=Gchil1635.t1|Name=Gchil1635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=582bp
MDARFIDRALRAAVLDHCVFDAEDSNIKLDIVQAIIQYLHDEGYHDASNA
VQHETNVKINNAASKRSQLRRMKSAILDGDWQEVEHLLSRTTFKSMKAFK
FAVHKQQFLELIDHQERQKAFSILQRRLKELEAYARTADEFRDMCYLLTC
KSVNDAPSFRHWDGVASSRAALVEQYSRLLEFDIFRRDGCLNDENLIEAA
DIPPTRLVHLLQQALAFQIGSSRHAPKLPPRIGTLLEDYESVVIPNKLQR
AFVGHTANVKCLTFVGEEGDAVASGSSDNTVRIWDMNSGSQKRILRGHTS
RIWDVSATRNGKLLASASGDGSIRLWDTATLSDVHDAKEWAAKRHEQSVG
RLRVNGNMDGGSADMCRAVLQGHAHDVYAVRMQARGGAVASGGYDRLVRF
YDTETQTLLKSFGGHKSSISSVGFNARGNLIVTGSKDSSIKFWDVVSGLC
VRTLSAHLGEVTSVEINQSGSLMVSSSKDNSNRLWDIRMTKVVKRFKGHQ
NTSKNFVRSVFGPRESVVIGGSEDGHVYIWDVDSSEVLQKLGAGGGTVYD
VEWNARRSVLASCAHDGVVSVWCFDEAQHQE*
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mRNA from alignment at tig00004403_pilon:1242435..1244180-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1635.t1 ID=Gchil1635.t1|Name=Gchil1635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00004403_pilon:1242435..1244180- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCGCGTTTCATCGACCGTGCGTTGCGCGCCGCCGTGCTCGATCA
CTGTGTCTTCGACGCCGAAGACTCTAACATCAAGCTCGACATTGTGCAGG
CTATCATCCAGTATTTGCACGACGAGGGCTACCATGACGCCTCCAACGCC
GTGCAACATGAGACTAACGTTAAGATCAACAATGCCGCCTCCAAGCGTTC
GCAGTTGCGCCGCATGAAGAGCGCCATTCTGGACGGCGACTGGCAGGAGG
TGGAGCATCTGCTTTCGCGCACCACCTTCAAGTCCATGAAGGCCTTCAAA
TTTGCCGTGCACAAGCAGCAATTCCTCGAGCTCATCGACCACCAAGAGCG
TCAGAAGGCCTTCTCCATTCTTCAGCGCCGCCTCAAGGAGCTCGAGGCGT
ACGCGCGCACAGCCGATGAGTTTCGAGACATGTGCTATCTGCTCACGTGC
AAATCAGTCAACGATGCGCCCTCGTTCCGCCACTGGGATGGAGTTGCCTC
AAGCAGGGCCGCCCTCGTCGAGCAGTACTCCCGACTGCTCGAATTCGACA
TCTTCCGTCGAGATGGTTGTCTCAACGACGAAAACCTGATAGAAGCCGCC
GATATCCCGCCCACCAGGCTCGTGCACCTGCTTCAACAAGCACTGGCCTT
TCAGATTGGCTCGTCCCGCCACGCCCCAAAGCTTCCGCCACGAATCGGCA
CGCTGCTGGAGGACTACGAAAGCGTGGTGATTCCCAACAAGCTGCAGCGC
GCCTTCGTGGGGCACACCGCAAACGTCAAGTGCCTCACCTTTGTCGGCGA
GGAAGGAGACGCCGTGGCAAGCGGCTCAAGTGACAACACCGTGCGCATCT
GGGATATGAATAGCGGCTCGCAAAAGCGAATTCTACGCGGGCATACGTCG
CGAATTTGGGACGTGAGCGCAACCAGAAATGGAAAACTGCTGGCAAGTGC
CAGTGGCGACGGTAGCATTCGCCTGTGGGACACGGCCACGCTTTCGGATG
TACATGACGCCAAGGAATGGGCCGCGAAAAGACATGAGCAGTCGGTTGGC
AGACTGCGAGTCAATGGAAACATGGACGGCGGCAGTGCTGATATGTGTCG
CGCTGTGTTGCAAGGTCACGCGCATGATGTGTACGCTGTGAGAATGCAGG
CTCGGGGAGGCGCCGTTGCTAGCGGTGGTTATGACAGATTGGTGCGTTTT
TATGATACAGAGACGCAAACGCTGTTGAAAAGCTTTGGCGGGCACAAGAG
CTCGATAAGCAGTGTGGGCTTCAACGCCAGAGGCAATTTGATTGTGACTG
GCAGCAAAGATTCGAGCATCAAGTTCTGGGATGTGGTGAGTGGGCTGTGC
GTGCGGACGCTGAGCGCACACTTGGGCGAGGTGACGTCTGTGGAAATCAA
CCAGTCGGGGTCGCTGATGGTGTCGAGCTCAAAAGACAACTCGAATCGAC
TGTGGGATATACGGATGACCAAGGTTGTGAAGCGGTTCAAGGGACACCAG
AATACAAGCAAAAACTTTGTGCGAAGCGTGTTTGGGCCTCGGGAGAGTGT
GGTAATCGGGGGGAGCGAGGATGGGCATGTGTACATATGGGATGTGGATA
GCAGCGAGGTGTTGCAAAAGCTGGGGGCGGGCGGGGGCACAGTGTACGAC
GTGGAGTGGAATGCGAGGCGGAGCGTGTTGGCGAGCTGTGCGCACGACGG
GGTTGTGAGCGTGTGGTGTTTTGACGAGGCGCAGCATCAAGAGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1242435..1244180-

>Gchil1635.t1 ID=Gchil1635.t1|Name=Gchil1635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1746bp|location=Sequence derived from alignment at tig00004403_pilon:1242435..1244180- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCGCGTTTCATCGACCGTGCGTTGCGCGCCGCCGTGCTCGATCA
CTGTGTCTTCGACGCCGAAGACTCTAACATCAAGCTCGACATTGTGCAGG
CTATCATCCAGTATTTGCACGACGAGGGCTACCATGACGCCTCCAACGCC
GTGCAACATGAGACTAACGTTAAGATCAACAATGCCGCCTCCAAGCGTTC
GCAGTTGCGCCGCATGAAGAGCGCCATTCTGGACGGCGACTGGCAGGAGG
TGGAGCATCTGCTTTCGCGCACCACCTTCAAGTCCATGAAGGCCTTCAAA
TTTGCCGTGCACAAGCAGCAATTCCTCGAGCTCATCGACCACCAAGAGCG
TCAGAAGGCCTTCTCCATTCTTCAGCGCCGCCTCAAGGAGCTCGAGGCGT
ACGCGCGCACAGCCGATGAGTTTCGAGACATGTGCTATCTGCTCACGTGC
AAATCAGTCAACGATGCGCCCTCGTTCCGCCACTGGGATGGAGTTGCCTC
AAGCAGGGCCGCCCTCGTCGAGCAGTACTCCCGACTGCTCGAATTCGACA
TCTTCCGTCGAGATGGTTGTCTCAACGACGAAAACCTGATAGAAGCCGCC
GATATCCCGCCCACCAGGCTCGTGCACCTGCTTCAACAAGCACTGGCCTT
TCAGATTGGCTCGTCCCGCCACGCCCCAAAGCTTCCGCCACGAATCGGCA
CGCTGCTGGAGGACTACGAAAGCGTGGTGATTCCCAACAAGCTGCAGCGC
GCCTTCGTGGGGCACACCGCAAACGTCAAGTGCCTCACCTTTGTCGGCGA
GGAAGGAGACGCCGTGGCAAGCGGCTCAAGTGACAACACCGTGCGCATCT
GGGATATGAATAGCGGCTCGCAAAAGCGAATTCTACGCGGGCATACGTCG
CGAATTTGGGACGTGAGCGCAACCAGAAATGGAAAACTGCTGGCAAGTGC
CAGTGGCGACGGTAGCATTCGCCTGTGGGACACGGCCACGCTTTCGGATG
TACATGACGCCAAGGAATGGGCCGCGAAAAGACATGAGCAGTCGGTTGGC
AGACTGCGAGTCAATGGAAACATGGACGGCGGCAGTGCTGATATGTGTCG
CGCTGTGTTGCAAGGTCACGCGCATGATGTGTACGCTGTGAGAATGCAGG
CTCGGGGAGGCGCCGTTGCTAGCGGTGGTTATGACAGATTGGTGCGTTTT
TATGATACAGAGACGCAAACGCTGTTGAAAAGCTTTGGCGGGCACAAGAG
CTCGATAAGCAGTGTGGGCTTCAACGCCAGAGGCAATTTGATTGTGACTG
GCAGCAAAGATTCGAGCATCAAGTTCTGGGATGTGGTGAGTGGGCTGTGC
GTGCGGACGCTGAGCGCACACTTGGGCGAGGTGACGTCTGTGGAAATCAA
CCAGTCGGGGTCGCTGATGGTGTCGAGCTCAAAAGACAACTCGAATCGAC
TGTGGGATATACGGATGACCAAGGTTGTGAAGCGGTTCAAGGGACACCAG
AATACAAGCAAAAACTTTGTGCGAAGCGTGTTTGGGCCTCGGGAGAGTGT
GGTAATCGGGGGGAGCGAGGATGGGCATGTGTACATATGGGATGTGGATA
GCAGCGAGGTGTTGCAAAAGCTGGGGGCGGGCGGGGGCACAGTGTACGAC
GTGGAGTGGAATGCGAGGCGGAGCGTGTTGGCGAGCTGTGCGCACGACGG
GGTTGTGAGCGTGTGGTGTTTTGACGAGGCGCAGCATCAAGAGTGA
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