Gchil1621.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1621.t1
Unique NameGchil1621.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1216821..1217156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4558.Sb02g006170.1
PFAMsV-ATPase_G
Max annot lvl35493|Streptophyta
KEGG koko:K02152
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Evalue2.39e-07
EggNOG OGsKOG1772@1|root,KOG1772@2759|Eukaryota,37V81@33090|Viridiplantae,3GJCD@35493|Streptophyta,3M0GG@4447|Liliopsida,3II9I@38820|Poales
DescriptionCatalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1621Gchil1621Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1216821..1217156 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1621.t1.stop1Gchil1621.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1216821..1216823 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1621.t1.CDS1Gchil1621.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1216821..1217156 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1621.t1.exon1Gchil1621.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1216821..1217156 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1621.t1.start1Gchil1621.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1217154..1217156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1621.t1Gchil1621.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1216821..1217156 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1621.t1 ID=Gchil1621.t1|Name=Gchil1621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=112bp
MSAEKPAETIQTLLEAEEEAKKLIEAARKERDARLKQAASEAESEITEYR
SQRETEYQSEKETYAGSSKKSSDQIAAESKQNIKRTINEARTNKQAVVNM
LVAYVKTVSTV*
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spliced messenger RNA

>Gchil1621.t1 ID=Gchil1621.t1|Name=Gchil1621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=336bp|location=Sequence derived from alignment at tig00004403_pilon:1216821..1217156- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCGAAAAGCCCGCCGAAACCATTCAAACCCTCCTTGAGGCCGA
AGAGGAGGCTAAGAAGCTCATCGAGGCCGCCCGCAAGGAGCGTGACGCCC
GTCTCAAGCAGGCCGCCTCAGAAGCCGAGTCCGAAATCACCGAGTATCGC
TCGCAGAGGGAAACCGAGTATCAGAGCGAGAAAGAAACTTATGCTGGCTC
ATCAAAGAAATCTTCTGACCAGATCGCTGCTGAATCGAAACAGAATATCA
AGAGGACCATTAACGAGGCTAGGACAAACAAGCAAGCTGTTGTCAACATG
CTTGTTGCTTATGTCAAGACTGTTAGCACTGTTTAG
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protein sequence of Gchil1621.t1

>Gchil1621.t1 ID=Gchil1621.t1|Name=Gchil1621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=112bp
MSAEKPAETIQTLLEAEEEAKKLIEAARKERDARLKQAASEAESEITEYR
SQRETEYQSEKETYAGSSKKSSDQIAAESKQNIKRTINEARTNKQAVVNM
LVAYVKTVSTV*
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mRNA from alignment at tig00004403_pilon:1216821..1217156-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1621.t1 ID=Gchil1621.t1|Name=Gchil1621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=336bp|location=Sequence derived from alignment at tig00004403_pilon:1216821..1217156- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCGAAAAGCCCGCCGAAACCATTCAAACCCTCCTTGAGGCCGA
AGAGGAGGCTAAGAAGCTCATCGAGGCCGCCCGCAAGGAGCGTGACGCCC
GTCTCAAGCAGGCCGCCTCAGAAGCCGAGTCCGAAATCACCGAGTATCGC
TCGCAGAGGGAAACCGAGTATCAGAGCGAGAAAGAAACTTATGCTGGCTC
ATCAAAGAAATCTTCTGACCAGATCGCTGCTGAATCGAAACAGAATATCA
AGAGGACCATTAACGAGGCTAGGACAAACAAGCAAGCTGTTGTCAACATG
CTTGTTGCTTATGTCAAGACTGTTAGCACTGTTTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:1216821..1217156-

>Gchil1621.t1 ID=Gchil1621.t1|Name=Gchil1621.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=336bp|location=Sequence derived from alignment at tig00004403_pilon:1216821..1217156- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCCGAAAAGCCCGCCGAAACCATTCAAACCCTCCTTGAGGCCGA
AGAGGAGGCTAAGAAGCTCATCGAGGCCGCCCGCAAGGAGCGTGACGCCC
GTCTCAAGCAGGCCGCCTCAGAAGCCGAGTCCGAAATCACCGAGTATCGC
TCGCAGAGGGAAACCGAGTATCAGAGCGAGAAAGAAACTTATGCTGGCTC
ATCAAAGAAATCTTCTGACCAGATCGCTGCTGAATCGAAACAGAATATCA
AGAGGACCATTAACGAGGCTAGGACAAACAAGCAAGCTGTTGTCAACATG
CTTGTTGCTTATGTCAAGACTGTTAGCACTGTTTAG
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