Gchil1620.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1620.t1
Unique NameGchil1620.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1215566..1216771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1620Gchil1620Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1215566..1216771 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1620.t1.start1Gchil1620.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1215566..1215568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1620.t1.CDS1Gchil1620.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1215566..1216771 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1620.t1.exon1Gchil1620.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1215566..1216771 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1620.t1.stop1Gchil1620.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1216769..1216771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1620.t1Gchil1620.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1215566..1216771 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1620.t1 ID=Gchil1620.t1|Name=Gchil1620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=402bp
MSSVRHSALLASPGLLSAHALLTLDSVSPCHEDASQAASARDTQRRISFG
AVTDQLIHRNDSQLRSHSPCPKKRTPSISVRNRGPTSDALPEPHPQLSQE
PTQNRIIPEESQRKVSSESDQWHVLPEPSQQPSPEAPHQLSDSCSPLFPP
SQRALLTAKHSPSQPTPPTSHRPSPDQPLQFSRTPTPSAKSPLCSKMRFR
RFATSLSMGNSACSWAGELGSPSSAALSIFRKPEHRLIEQPLQLRGISPP
RCKPRAPSPTISEPSPVQQPKQTPEQLKRDPIPTQDTEELALQSGTEKAG
DIEHTVEDVLSEENRVKEMTNSTDEVHHDTQVDIRMRSMCNNEIMDVCSS
TQSPCSAGLKEKNKTEGENTKAQDDAVYCRSVLVSIPSGVLRSVDYNESP
Q*
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spliced messenger RNA

>Gchil1620.t1 ID=Gchil1620.t1|Name=Gchil1620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00004403_pilon:1215566..1216771+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGGTGCGTCATTCAGCTTTGCTGGCTTCGCCTGGTTTGTTATC
GGCCCATGCCCTGTTGACTCTCGACAGTGTGTCTCCGTGCCATGAGGATG
CGTCGCAAGCTGCTTCAGCACGGGATACGCAGCGTCGAATATCCTTTGGT
GCAGTCACGGACCAACTGATACACCGAAACGATTCTCAATTGCGTTCGCA
TTCTCCTTGTCCGAAGAAGCGTACTCCGTCCATTTCTGTTCGAAACCGCG
GGCCGACTAGTGACGCATTACCTGAACCGCACCCACAACTCTCCCAAGAG
CCTACACAAAATCGTATTATACCTGAGGAGTCACAAAGAAAGGTTTCATC
TGAGTCAGATCAATGGCATGTATTACCGGAACCCTCACAACAACCTTCTC
CTGAAGCTCCACATCAACTTTCTGACTCATGCTCTCCGTTGTTTCCTCCA
TCACAACGGGCTCTACTAACTGCTAAACATTCCCCATCACAACCAACACC
CCCCACTTCTCACCGTCCATCGCCTGATCAGCCTCTGCAGTTTTCTCGCA
CGCCAACACCATCCGCCAAATCACCGTTATGTTCAAAAATGCGTTTCCGC
CGCTTTGCCACGTCTCTTTCCATGGGGAATAGCGCATGTAGCTGGGCAGG
CGAATTAGGTTCTCCCAGTTCGGCTGCGCTTAGTATTTTTCGTAAGCCCG
AACATCGATTGATTGAACAGCCTCTTCAACTGCGAGGTATCTCCCCTCCG
AGATGCAAGCCAAGGGCACCGTCACCGACCATAAGTGAGCCTTCTCCAGT
GCAGCAACCGAAACAAACGCCGGAACAATTGAAACGCGACCCTATTCCTA
CTCAAGATACGGAAGAACTAGCACTACAGTCTGGAACAGAAAAAGCGGGC
GACATTGAGCATACGGTGGAGGACGTGCTAAGCGAGGAGAACAGGGTAAA
GGAGATGACTAACTCAACGGACGAGGTGCATCACGATACGCAAGTGGATA
TTAGAATGAGAAGCATGTGTAACAATGAGATAATGGACGTTTGCTCGTCC
ACGCAATCGCCATGTAGCGCAGGTTTGAAGGAAAAGAACAAAACAGAAGG
TGAAAACACAAAAGCGCAAGATGATGCTGTTTACTGCCGGTCTGTGTTAG
TTTCAATCCCAAGCGGCGTACTACGATCAGTCGATTATAATGAGTCACCG
CAATGA
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protein sequence of Gchil1620.t1

>Gchil1620.t1 ID=Gchil1620.t1|Name=Gchil1620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=402bp
MSSVRHSALLASPGLLSAHALLTLDSVSPCHEDASQAASARDTQRRISFG
AVTDQLIHRNDSQLRSHSPCPKKRTPSISVRNRGPTSDALPEPHPQLSQE
PTQNRIIPEESQRKVSSESDQWHVLPEPSQQPSPEAPHQLSDSCSPLFPP
SQRALLTAKHSPSQPTPPTSHRPSPDQPLQFSRTPTPSAKSPLCSKMRFR
RFATSLSMGNSACSWAGELGSPSSAALSIFRKPEHRLIEQPLQLRGISPP
RCKPRAPSPTISEPSPVQQPKQTPEQLKRDPIPTQDTEELALQSGTEKAG
DIEHTVEDVLSEENRVKEMTNSTDEVHHDTQVDIRMRSMCNNEIMDVCSS
TQSPCSAGLKEKNKTEGENTKAQDDAVYCRSVLVSIPSGVLRSVDYNESP
Q*
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mRNA from alignment at tig00004403_pilon:1215566..1216771+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1620.t1 ID=Gchil1620.t1|Name=Gchil1620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at tig00004403_pilon:1215566..1216771+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCGGTGCGTCATTCAGCTTTGCTGGCTTCGCCTGGTTTGTTATC
GGCCCATGCCCTGTTGACTCTCGACAGTGTGTCTCCGTGCCATGAGGATG
CGTCGCAAGCTGCTTCAGCACGGGATACGCAGCGTCGAATATCCTTTGGT
GCAGTCACGGACCAACTGATACACCGAAACGATTCTCAATTGCGTTCGCA
TTCTCCTTGTCCGAAGAAGCGTACTCCGTCCATTTCTGTTCGAAACCGCG
GGCCGACTAGTGACGCATTACCTGAACCGCACCCACAACTCTCCCAAGAG
CCTACACAAAATCGTATTATACCTGAGGAGTCACAAAGAAAGGTTTCATC
TGAGTCAGATCAATGGCATGTATTACCGGAACCCTCACAACAACCTTCTC
CTGAAGCTCCACATCAACTTTCTGACTCATGCTCTCCGTTGTTTCCTCCA
TCACAACGGGCTCTACTAACTGCTAAACATTCCCCATCACAACCAACACC
CCCCACTTCTCACCGTCCATCGCCTGATCAGCCTCTGCAGTTTTCTCGCA
CGCCAACACCATCCGCCAAATCACCGTTATGTTCAAAAATGCGTTTCCGC
CGCTTTGCCACGTCTCTTTCCATGGGGAATAGCGCATGTAGCTGGGCAGG
CGAATTAGGTTCTCCCAGTTCGGCTGCGCTTAGTATTTTTCGTAAGCCCG
AACATCGATTGATTGAACAGCCTCTTCAACTGCGAGGTATCTCCCCTCCG
AGATGCAAGCCAAGGGCACCGTCACCGACCATAAGTGAGCCTTCTCCAGT
GCAGCAACCGAAACAAACGCCGGAACAATTGAAACGCGACCCTATTCCTA
CTCAAGATACGGAAGAACTAGCACTACAGTCTGGAACAGAAAAAGCGGGC
GACATTGAGCATACGGTGGAGGACGTGCTAAGCGAGGAGAACAGGGTAAA
GGAGATGACTAACTCAACGGACGAGGTGCATCACGATACGCAAGTGGATA
TTAGAATGAGAAGCATGTGTAACAATGAGATAATGGACGTTTGCTCGTCC
ACGCAATCGCCATGTAGCGCAGGTTTGAAGGAAAAGAACAAAACAGAAGG
TGAAAACACAAAAGCGCAAGATGATGCTGTTTACTGCCGGTCTGTGTTAG
TTTCAATCCCAAGCGGCGTACTACGATCAGTCGATTATAATGAGTCACCG
CAATGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1215566..1216771+

>Gchil1620.t1 ID=Gchil1620.t1|Name=Gchil1620.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1206bp|location=Sequence derived from alignment at tig00004403_pilon:1215566..1216771+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCGGTGCGTCATTCAGCTTTGCTGGCTTCGCCTGGTTTGTTATC
GGCCCATGCCCTGTTGACTCTCGACAGTGTGTCTCCGTGCCATGAGGATG
CGTCGCAAGCTGCTTCAGCACGGGATACGCAGCGTCGAATATCCTTTGGT
GCAGTCACGGACCAACTGATACACCGAAACGATTCTCAATTGCGTTCGCA
TTCTCCTTGTCCGAAGAAGCGTACTCCGTCCATTTCTGTTCGAAACCGCG
GGCCGACTAGTGACGCATTACCTGAACCGCACCCACAACTCTCCCAAGAG
CCTACACAAAATCGTATTATACCTGAGGAGTCACAAAGAAAGGTTTCATC
TGAGTCAGATCAATGGCATGTATTACCGGAACCCTCACAACAACCTTCTC
CTGAAGCTCCACATCAACTTTCTGACTCATGCTCTCCGTTGTTTCCTCCA
TCACAACGGGCTCTACTAACTGCTAAACATTCCCCATCACAACCAACACC
CCCCACTTCTCACCGTCCATCGCCTGATCAGCCTCTGCAGTTTTCTCGCA
CGCCAACACCATCCGCCAAATCACCGTTATGTTCAAAAATGCGTTTCCGC
CGCTTTGCCACGTCTCTTTCCATGGGGAATAGCGCATGTAGCTGGGCAGG
CGAATTAGGTTCTCCCAGTTCGGCTGCGCTTAGTATTTTTCGTAAGCCCG
AACATCGATTGATTGAACAGCCTCTTCAACTGCGAGGTATCTCCCCTCCG
AGATGCAAGCCAAGGGCACCGTCACCGACCATAAGTGAGCCTTCTCCAGT
GCAGCAACCGAAACAAACGCCGGAACAATTGAAACGCGACCCTATTCCTA
CTCAAGATACGGAAGAACTAGCACTACAGTCTGGAACAGAAAAAGCGGGC
GACATTGAGCATACGGTGGAGGACGTGCTAAGCGAGGAGAACAGGGTAAA
GGAGATGACTAACTCAACGGACGAGGTGCATCACGATACGCAAGTGGATA
TTAGAATGAGAAGCATGTGTAACAATGAGATAATGGACGTTTGCTCGTCC
ACGCAATCGCCATGTAGCGCAGGTTTGAAGGAAAAGAACAAAACAGAAGG
TGAAAACACAAAAGCGCAAGATGATGCTGTTTACTGCCGGTCTGTGTTAG
TTTCAATCCCAAGCGGCGTACTACGATCAGTCGATTATAATGAGTCACCG
CAATGA
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