Gchil1606.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1606.t1
Unique NameGchil1606.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1146963..1147658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog37682.EMT25214
PFAMsSNase
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004536,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006308,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901575
Evalue1.42e-24
EggNOG OGsCOG1525@1|root,2QT2R@2759|Eukaryota,37HVU@33090|Viridiplantae,3GE5Q@35493|Streptophyta,3KNZ9@4447|Liliopsida,3IAPZ@38820|Poales
DescriptionStaphylococcal nuclease homologues
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1606Gchil1606Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1146963..1147658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1606.t1Gchil1606.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1146963..1147658 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1606.t1.stop1Gchil1606.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1146963..1146965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1606.t1.CDS1Gchil1606.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1146963..1147263 -
Gchil1606.t1.CDS2Gchil1606.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1147348..1147658 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1606.t1.exon1Gchil1606.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1146963..1147263 -
Gchil1606.t1.exon2Gchil1606.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1147348..1147658 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1606.t1.intron1Gchil1606.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004403_pilon 1147264..1147347 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1606.t1.start1Gchil1606.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1147656..1147658 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1606.t1 ID=Gchil1606.t1|Name=Gchil1606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=204bp
MGSCLSLCFPSEKPPQQQSQQSPLSYAAAVAQTAVHTVSELIQQPQHAVP
TGAEGKQVIRGAYVFKMPDGDTFNCDYTDGSGEKATARVRVMAIDCPETK
QNFGQQATQIGQQMLLRTNVTLYVHTTDRYGRLVADVITKDGVNYGEYML
EQGAAWHYKAYDKRQHLAHIEEEAKNANIGLWSFARPLEPWEYRRRKRNN
NKK*
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spliced messenger RNA

>Gchil1606.t1 ID=Gchil1606.t1|Name=Gchil1606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=612bp|location=Sequence derived from alignment at tig00004403_pilon:1146963..1147658- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCTTGTCTTTCCCTTTGCTTTCCGTCGGAAAAGCCGCCGCAGCA
ACAATCGCAACAGTCGCCGCTTTCCTATGCGGCCGCCGTCGCCCAAACAG
CCGTGCACACCGTCTCGGAGCTCATTCAGCAGCCGCAGCATGCCGTGCCC
ACCGGCGCCGAGGGGAAGCAGGTGATTCGCGGCGCCTACGTGTTCAAGAT
GCCCGACGGCGATACGTTCAACTGCGACTACACCGATGGCTCCGGCGAGA
AGGCTACAGCTCGAGTGCGCGTTATGGCTATAGATTGCCCAGAGACCAAA
CAGAATTTTGGACAGCAAGCCACGCAAATTGGCCAACAGATGCTACTTCG
CACCAATGTCACTCTGTACGTTCACACCACCGACCGATACGGTCGATTGG
TTGCCGATGTCATTACAAAAGACGGCGTCAATTACGGCGAATACATGCTT
GAGCAAGGCGCGGCGTGGCATTACAAGGCGTACGACAAACGACAACATCT
TGCGCACATCGAAGAGGAGGCCAAAAACGCCAACATCGGCCTGTGGTCAT
TTGCGCGCCCGTTGGAACCGTGGGAGTATCGACGCCGTAAACGTAACAAT
AACAAAAAATAA
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protein sequence of Gchil1606.t1

>Gchil1606.t1 ID=Gchil1606.t1|Name=Gchil1606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=204bp
MGSCLSLCFPSEKPPQQQSQQSPLSYAAAVAQTAVHTVSELIQQPQHAVP
TGAEGKQVIRGAYVFKMPDGDTFNCDYTDGSGEKATARVRVMAIDCPETK
QNFGQQATQIGQQMLLRTNVTLYVHTTDRYGRLVADVITKDGVNYGEYML
EQGAAWHYKAYDKRQHLAHIEEEAKNANIGLWSFARPLEPWEYRRRKRNN
NKK*
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mRNA from alignment at tig00004403_pilon:1146963..1147658-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1606.t1 ID=Gchil1606.t1|Name=Gchil1606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00004403_pilon:1146963..1147658- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTCTTGTCTTTCCCTTTGCTTTCCGTCGGAAAAGCCGCCGCAGCA
ACAATCGCAACAGTCGCCGCTTTCCTATGCGGCCGCCGTCGCCCAAACAG
CCGTGCACACCGTCTCGGAGCTCATTCAGCAGCCGCAGCATGCCGTGCCC
ACCGGCGCCGAGGGGAAGCAGGTGATTCGCGGCGCCTACGTGTTCAAGAT
GCCCGACGGCGATACGTTCAACTGCGACTACACCGATGGCTCCGGCGAGA
AGGCTACAGCTCGAGTGCGCGTTATGGCTATAGATTGCCCAGAGACCAAA
CAGAATTTTGGGTACGTGCGTCTGTCTCCCTTTCAACGCGTTTTACAAAG
CTTGCATTGCTGCCATACTCACCCGTTTCTTTCCCCTGTCAACAGACAGC
AAGCCACGCAAATTGGCCAACAGATGCTACTTCGCACCAATGTCACTCTG
TACGTTCACACCACCGACCGATACGGTCGATTGGTTGCCGATGTCATTAC
AAAAGACGGCGTCAATTACGGCGAATACATGCTTGAGCAAGGCGCGGCGT
GGCATTACAAGGCGTACGACAAACGACAACATCTTGCGCACATCGAAGAG
GAGGCCAAAAACGCCAACATCGGCCTGTGGTCATTTGCGCGCCCGTTGGA
ACCGTGGGAGTATCGACGCCGTAAACGTAACAATAACAAAAAATAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1146963..1147658-

>Gchil1606.t1 ID=Gchil1606.t1|Name=Gchil1606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=612bp|location=Sequence derived from alignment at tig00004403_pilon:1146963..1147658- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTCTTGTCTTTCCCTTTGCTTTCCGTCGGAAAAGCCGCCGCAGCA
ACAATCGCAACAGTCGCCGCTTTCCTATGCGGCCGCCGTCGCCCAAACAG
CCGTGCACACCGTCTCGGAGCTCATTCAGCAGCCGCAGCATGCCGTGCCC
ACCGGCGCCGAGGGGAAGCAGGTGATTCGCGGCGCCTACGTGTTCAAGAT
GCCCGACGGCGATACGTTCAACTGCGACTACACCGATGGCTCCGGCGAGA
AGGCTACAGCTCGAGTGCGCGTTATGGCTATAGATTGCCCAGAGACCAAA
CAGAATTTTGGACAGCAAGCCACGCAAATTGGCCAACAGATGCTACTTCG
CACCAATGTCACTCTGTACGTTCACACCACCGACCGATACGGTCGATTGG
TTGCCGATGTCATTACAAAAGACGGCGTCAATTACGGCGAATACATGCTT
GAGCAAGGCGCGGCGTGGCATTACAAGGCGTACGACAAACGACAACATCT
TGCGCACATCGAAGAGGAGGCCAAAAACGCCAACATCGGCCTGTGGTCAT
TTGCGCGCCCGTTGGAACCGTGGGAGTATCGACGCCGTAAACGTAACAAT
AACAAAAAATAA
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