Gchil1598.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1598.t1
Unique NameGchil1598.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1125537..1126772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog479434.Sthe_2312
PFAMsFAD_binding_3
Max annot lvl189775|Thermomicrobia
KEGG rclassRC00046
KEGG koko:K19189
KEGG ReactionR04130
KEGG Pathwayko00760,ko01120,map00760,map01120
Evalue1.54e-89
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,2GBDX@200795|Chloroflexi,27Z1B@189775|Thermomicrobia
EC1.14.13.10
DescriptionFAD binding domain
COG categoryCH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1598Gchil1598Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1125537..1126772 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1598.t1.stop1Gchil1598.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1125537..1125539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1598.t1.CDS1Gchil1598.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1125537..1126772 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1598.t1.exon1Gchil1598.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1125537..1126772 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1598.t1.start1Gchil1598.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1126770..1126772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1598.t1Gchil1598.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1125537..1126772 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1598.t1 ID=Gchil1598.t1|Name=Gchil1598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=412bp
MSDKQSAVIVGGSLGGLTAAICLRDIGFSVSVFERCHEYLSGKGAGIALN
PSMLSFIQDHPRFRLSEHGRTIRKYRHLDHGREDCRERNVTLAVSSYNSV
YKALLEIFGTQDYHLGQNVMDVSQSSEKVSITTADGERYFCDLLVCADGS
GSNLRQIFALDKEPTYAGYYAWRGIVNKSQLSACLARDFEESLSYHMSQD
GHILSYPIPYFEADENGKLEKSTYINWLWYRNFPHRKKLENLLVDATGKR
RLKSVPRGCVSSDRIEELRNDARILQDDFRQLVNSTQDPFIQPIFDYATK
KMVVGRMCLLGDAAFSVRPHVAVGTAKAWDDAVSLAYFLKQPERNLHSAL
RTWEEKQLLLGNQLLKRSVELGTMLQTGAFNYDQPPPFGLHEAGDSYNWS
DALDTLAAERK*
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spliced messenger RNA

>Gchil1598.t1 ID=Gchil1598.t1|Name=Gchil1598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00004403_pilon:1125537..1126772- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGATAAGCAATCAGCTGTTATTGTCGGAGGCAGCCTTGGCGGTTT
GACTGCAGCGATATGCCTTCGTGATATCGGATTTTCGGTGTCTGTTTTCG
AGCGGTGTCACGAATATTTATCTGGGAAAGGAGCGGGTATAGCCCTGAAT
CCTTCTATGCTGTCTTTTATTCAAGATCATCCACGCTTTAGATTATCCGA
GCATGGGCGTACGATTAGGAAATATCGGCACTTGGATCACGGTCGTGAGG
ATTGTCGAGAGCGCAACGTAACGCTCGCCGTATCTTCCTATAACTCTGTG
TACAAGGCATTGCTTGAGATTTTTGGAACTCAGGACTACCATCTTGGTCA
AAACGTGATGGACGTATCCCAATCCTCTGAGAAGGTTTCAATTACAACAG
CGGATGGAGAACGATACTTCTGTGATCTTCTCGTATGCGCTGATGGAAGT
GGATCAAATTTGAGACAAATATTTGCCTTGGACAAAGAGCCAACATATGC
CGGATATTATGCATGGAGAGGAATCGTGAACAAAAGCCAGCTGTCGGCAT
GTTTGGCGAGGGACTTTGAAGAAAGTCTTTCGTACCATATGAGTCAAGAT
GGGCATATCTTGTCTTATCCGATTCCCTACTTCGAAGCGGATGAGAACGG
AAAGCTGGAAAAGTCAACTTACATCAACTGGTTGTGGTATAGAAATTTTC
CACATAGAAAGAAACTAGAAAACCTTCTCGTCGATGCAACAGGTAAACGT
AGACTCAAGTCCGTGCCGAGGGGATGTGTTTCGTCTGATCGTATAGAAGA
ACTGAGGAACGACGCGCGCATTCTACAAGATGATTTTCGTCAATTAGTCA
ACAGTACACAGGACCCTTTTATTCAACCAATCTTTGACTACGCCACGAAA
AAGATGGTTGTTGGGAGAATGTGCTTGCTTGGCGATGCCGCATTTTCTGT
TCGGCCTCACGTTGCAGTCGGAACTGCAAAAGCATGGGATGATGCAGTGA
GCTTGGCTTATTTTTTAAAGCAACCAGAACGAAACCTTCATTCCGCACTG
CGTACCTGGGAAGAAAAACAACTTTTATTGGGAAATCAGTTGCTGAAGAG
GAGTGTCGAGCTGGGGACCATGCTTCAAACGGGAGCTTTCAACTACGATC
AGCCACCACCATTCGGTCTGCATGAGGCTGGAGATTCTTACAACTGGAGC
GATGCCCTCGACACTCTTGCTGCAGAGCGCAAGTGA
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protein sequence of Gchil1598.t1

>Gchil1598.t1 ID=Gchil1598.t1|Name=Gchil1598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=412bp
MSDKQSAVIVGGSLGGLTAAICLRDIGFSVSVFERCHEYLSGKGAGIALN
PSMLSFIQDHPRFRLSEHGRTIRKYRHLDHGREDCRERNVTLAVSSYNSV
YKALLEIFGTQDYHLGQNVMDVSQSSEKVSITTADGERYFCDLLVCADGS
GSNLRQIFALDKEPTYAGYYAWRGIVNKSQLSACLARDFEESLSYHMSQD
GHILSYPIPYFEADENGKLEKSTYINWLWYRNFPHRKKLENLLVDATGKR
RLKSVPRGCVSSDRIEELRNDARILQDDFRQLVNSTQDPFIQPIFDYATK
KMVVGRMCLLGDAAFSVRPHVAVGTAKAWDDAVSLAYFLKQPERNLHSAL
RTWEEKQLLLGNQLLKRSVELGTMLQTGAFNYDQPPPFGLHEAGDSYNWS
DALDTLAAERK*
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mRNA from alignment at tig00004403_pilon:1125537..1126772-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1598.t1 ID=Gchil1598.t1|Name=Gchil1598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00004403_pilon:1125537..1126772- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGATAAGCAATCAGCTGTTATTGTCGGAGGCAGCCTTGGCGGTTT
GACTGCAGCGATATGCCTTCGTGATATCGGATTTTCGGTGTCTGTTTTCG
AGCGGTGTCACGAATATTTATCTGGGAAAGGAGCGGGTATAGCCCTGAAT
CCTTCTATGCTGTCTTTTATTCAAGATCATCCACGCTTTAGATTATCCGA
GCATGGGCGTACGATTAGGAAATATCGGCACTTGGATCACGGTCGTGAGG
ATTGTCGAGAGCGCAACGTAACGCTCGCCGTATCTTCCTATAACTCTGTG
TACAAGGCATTGCTTGAGATTTTTGGAACTCAGGACTACCATCTTGGTCA
AAACGTGATGGACGTATCCCAATCCTCTGAGAAGGTTTCAATTACAACAG
CGGATGGAGAACGATACTTCTGTGATCTTCTCGTATGCGCTGATGGAAGT
GGATCAAATTTGAGACAAATATTTGCCTTGGACAAAGAGCCAACATATGC
CGGATATTATGCATGGAGAGGAATCGTGAACAAAAGCCAGCTGTCGGCAT
GTTTGGCGAGGGACTTTGAAGAAAGTCTTTCGTACCATATGAGTCAAGAT
GGGCATATCTTGTCTTATCCGATTCCCTACTTCGAAGCGGATGAGAACGG
AAAGCTGGAAAAGTCAACTTACATCAACTGGTTGTGGTATAGAAATTTTC
CACATAGAAAGAAACTAGAAAACCTTCTCGTCGATGCAACAGGTAAACGT
AGACTCAAGTCCGTGCCGAGGGGATGTGTTTCGTCTGATCGTATAGAAGA
ACTGAGGAACGACGCGCGCATTCTACAAGATGATTTTCGTCAATTAGTCA
ACAGTACACAGGACCCTTTTATTCAACCAATCTTTGACTACGCCACGAAA
AAGATGGTTGTTGGGAGAATGTGCTTGCTTGGCGATGCCGCATTTTCTGT
TCGGCCTCACGTTGCAGTCGGAACTGCAAAAGCATGGGATGATGCAGTGA
GCTTGGCTTATTTTTTAAAGCAACCAGAACGAAACCTTCATTCCGCACTG
CGTACCTGGGAAGAAAAACAACTTTTATTGGGAAATCAGTTGCTGAAGAG
GAGTGTCGAGCTGGGGACCATGCTTCAAACGGGAGCTTTCAACTACGATC
AGCCACCACCATTCGGTCTGCATGAGGCTGGAGATTCTTACAACTGGAGC
GATGCCCTCGACACTCTTGCTGCAGAGCGCAAGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1125537..1126772-

>Gchil1598.t1 ID=Gchil1598.t1|Name=Gchil1598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00004403_pilon:1125537..1126772- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGATAAGCAATCAGCTGTTATTGTCGGAGGCAGCCTTGGCGGTTT
GACTGCAGCGATATGCCTTCGTGATATCGGATTTTCGGTGTCTGTTTTCG
AGCGGTGTCACGAATATTTATCTGGGAAAGGAGCGGGTATAGCCCTGAAT
CCTTCTATGCTGTCTTTTATTCAAGATCATCCACGCTTTAGATTATCCGA
GCATGGGCGTACGATTAGGAAATATCGGCACTTGGATCACGGTCGTGAGG
ATTGTCGAGAGCGCAACGTAACGCTCGCCGTATCTTCCTATAACTCTGTG
TACAAGGCATTGCTTGAGATTTTTGGAACTCAGGACTACCATCTTGGTCA
AAACGTGATGGACGTATCCCAATCCTCTGAGAAGGTTTCAATTACAACAG
CGGATGGAGAACGATACTTCTGTGATCTTCTCGTATGCGCTGATGGAAGT
GGATCAAATTTGAGACAAATATTTGCCTTGGACAAAGAGCCAACATATGC
CGGATATTATGCATGGAGAGGAATCGTGAACAAAAGCCAGCTGTCGGCAT
GTTTGGCGAGGGACTTTGAAGAAAGTCTTTCGTACCATATGAGTCAAGAT
GGGCATATCTTGTCTTATCCGATTCCCTACTTCGAAGCGGATGAGAACGG
AAAGCTGGAAAAGTCAACTTACATCAACTGGTTGTGGTATAGAAATTTTC
CACATAGAAAGAAACTAGAAAACCTTCTCGTCGATGCAACAGGTAAACGT
AGACTCAAGTCCGTGCCGAGGGGATGTGTTTCGTCTGATCGTATAGAAGA
ACTGAGGAACGACGCGCGCATTCTACAAGATGATTTTCGTCAATTAGTCA
ACAGTACACAGGACCCTTTTATTCAACCAATCTTTGACTACGCCACGAAA
AAGATGGTTGTTGGGAGAATGTGCTTGCTTGGCGATGCCGCATTTTCTGT
TCGGCCTCACGTTGCAGTCGGAACTGCAAAAGCATGGGATGATGCAGTGA
GCTTGGCTTATTTTTTAAAGCAACCAGAACGAAACCTTCATTCCGCACTG
CGTACCTGGGAAGAAAAACAACTTTTATTGGGAAATCAGTTGCTGAAGAG
GAGTGTCGAGCTGGGGACCATGCTTCAAACGGGAGCTTTCAACTACGATC
AGCCACCACCATTCGGTCTGCATGAGGCTGGAGATTCTTACAACTGGAGC
GATGCCCTCGACACTCTTGCTGCAGAGCGCAAGTGA
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