Gchil1597.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1597.t1
Unique NameGchil1597.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1122506..1123726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128398.Curi_c21900
Preferred nameprsW
PFAMsPrsW-protease
Max annot lvl186801|Clostridia
Evalue8.38e-06
EggNOG OGsCOG2339@1|root,COG2339@2|Bacteria,1UZGQ@1239|Firmicutes,24D4U@186801|Clostridia
DescriptionProtease prsW family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1597Gchil1597Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1122506..1123726 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1597.t1.stop1Gchil1597.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1122506..1122508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1597.t1.CDS1Gchil1597.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1122506..1123726 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1597.t1.exon1Gchil1597.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1122506..1123726 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1597.t1.start1Gchil1597.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1123724..1123726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1597.t1Gchil1597.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1122506..1123726 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1597.t1 ID=Gchil1597.t1|Name=Gchil1597.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=407bp
MGAETHSEPQDANLPSSSHAEEPEMPPTHTYTAPPSPDDIQRNQSLAPSS
SRIPFFAWLCIGCIPFLWLFLVLNSPRPLYNIFFTLLSILPAILVGKFVL
KVFADEAVSKSFLISQFLLGAFPLSVVVVIVETVWALVFGKILFSSEIVQ
FNEFLGLDSAIDGKPPSGTGVNRMIREIHSTFASSGDSLGKSPDPDKILE
YLREHVPLWKMIVFALFFAFIVAGLTEEVAKWTLARRYRVVNKMAENLEW
DRRISCRGILSVACTGALGFATIENYGFVTGLASSPDSKFGLGLVAMALF
RGLLAFPVHVGAQFYVAIAAAQSYIFREPIGVMKSLFIAVMFHGLFDAIS
FLMLLFVGVLGAPSWMNVFAPILQSCLTVLLVVLCRGRYKALLERERMVF
LSVNPV*
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spliced messenger RNA

>Gchil1597.t1 ID=Gchil1597.t1|Name=Gchil1597.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00004403_pilon:1122506..1123726- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGGAAACGCATTCCGAACCCCAAGACGCAAACTTACCATCCAG
CTCACACGCCGAAGAACCTGAAATGCCACCCACGCACACCTACACAGCAC
CTCCGTCACCAGATGATATCCAAAGGAACCAATCTCTCGCACCATCGTCA
TCACGAATACCATTTTTTGCTTGGCTATGCATTGGTTGCATTCCGTTTTT
ATGGTTGTTTCTCGTTCTCAATTCTCCTCGCCCACTTTACAACATCTTTT
TTACCCTTCTATCAATTCTCCCAGCGATCTTGGTGGGTAAATTCGTACTG
AAGGTATTTGCAGATGAGGCTGTCAGCAAATCTTTTCTAATATCCCAGTT
CCTGTTGGGGGCATTTCCTCTTTCTGTAGTAGTCGTCATTGTGGAAACAG
TTTGGGCTCTGGTTTTCGGGAAAATATTATTTTCATCCGAGATAGTCCAA
TTTAACGAGTTCCTGGGCCTAGATTCCGCCATAGACGGCAAACCTCCATC
CGGAACTGGTGTGAACAGAATGATAAGGGAAATTCATTCAACGTTCGCAT
CTTCTGGCGACTCTCTCGGCAAAAGTCCAGATCCAGACAAGATACTCGAA
TATCTACGAGAGCACGTCCCTCTGTGGAAAATGATCGTATTTGCGCTTTT
CTTTGCGTTCATTGTCGCTGGGTTAACGGAGGAAGTTGCCAAATGGACGC
TTGCTCGCCGGTATAGGGTGGTAAACAAGATGGCTGAGAACTTAGAATGG
GATCGTCGTATTTCTTGCAGAGGTATTCTTTCAGTTGCATGTACGGGAGC
TCTTGGGTTTGCTACTATTGAGAACTATGGATTCGTGACGGGGCTGGCAT
CATCGCCAGACTCAAAGTTTGGACTTGGACTCGTCGCTATGGCTTTGTTC
CGTGGTTTGTTGGCATTTCCAGTCCACGTCGGGGCGCAGTTCTATGTTGC
CATTGCTGCAGCTCAGTCGTATATCTTTCGTGAGCCGATTGGGGTGATGA
AGTCACTTTTCATTGCTGTTATGTTTCATGGCCTTTTTGATGCCATATCT
TTCTTAATGTTGCTGTTCGTTGGAGTATTGGGAGCTCCTTCCTGGATGAA
CGTGTTTGCTCCTATTCTGCAAAGTTGTTTGACAGTTTTGTTAGTAGTGC
TGTGCCGCGGGCGGTACAAGGCATTGTTGGAAAGAGAAAGAATGGTGTTT
CTGTCTGTTAATCCCGTATAA
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protein sequence of Gchil1597.t1

>Gchil1597.t1 ID=Gchil1597.t1|Name=Gchil1597.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=407bp
MGAETHSEPQDANLPSSSHAEEPEMPPTHTYTAPPSPDDIQRNQSLAPSS
SRIPFFAWLCIGCIPFLWLFLVLNSPRPLYNIFFTLLSILPAILVGKFVL
KVFADEAVSKSFLISQFLLGAFPLSVVVVIVETVWALVFGKILFSSEIVQ
FNEFLGLDSAIDGKPPSGTGVNRMIREIHSTFASSGDSLGKSPDPDKILE
YLREHVPLWKMIVFALFFAFIVAGLTEEVAKWTLARRYRVVNKMAENLEW
DRRISCRGILSVACTGALGFATIENYGFVTGLASSPDSKFGLGLVAMALF
RGLLAFPVHVGAQFYVAIAAAQSYIFREPIGVMKSLFIAVMFHGLFDAIS
FLMLLFVGVLGAPSWMNVFAPILQSCLTVLLVVLCRGRYKALLERERMVF
LSVNPV*
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mRNA from alignment at tig00004403_pilon:1122506..1123726-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1597.t1 ID=Gchil1597.t1|Name=Gchil1597.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00004403_pilon:1122506..1123726- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCGGAAACGCATTCCGAACCCCAAGACGCAAACTTACCATCCAG
CTCACACGCCGAAGAACCTGAAATGCCACCCACGCACACCTACACAGCAC
CTCCGTCACCAGATGATATCCAAAGGAACCAATCTCTCGCACCATCGTCA
TCACGAATACCATTTTTTGCTTGGCTATGCATTGGTTGCATTCCGTTTTT
ATGGTTGTTTCTCGTTCTCAATTCTCCTCGCCCACTTTACAACATCTTTT
TTACCCTTCTATCAATTCTCCCAGCGATCTTGGTGGGTAAATTCGTACTG
AAGGTATTTGCAGATGAGGCTGTCAGCAAATCTTTTCTAATATCCCAGTT
CCTGTTGGGGGCATTTCCTCTTTCTGTAGTAGTCGTCATTGTGGAAACAG
TTTGGGCTCTGGTTTTCGGGAAAATATTATTTTCATCCGAGATAGTCCAA
TTTAACGAGTTCCTGGGCCTAGATTCCGCCATAGACGGCAAACCTCCATC
CGGAACTGGTGTGAACAGAATGATAAGGGAAATTCATTCAACGTTCGCAT
CTTCTGGCGACTCTCTCGGCAAAAGTCCAGATCCAGACAAGATACTCGAA
TATCTACGAGAGCACGTCCCTCTGTGGAAAATGATCGTATTTGCGCTTTT
CTTTGCGTTCATTGTCGCTGGGTTAACGGAGGAAGTTGCCAAATGGACGC
TTGCTCGCCGGTATAGGGTGGTAAACAAGATGGCTGAGAACTTAGAATGG
GATCGTCGTATTTCTTGCAGAGGTATTCTTTCAGTTGCATGTACGGGAGC
TCTTGGGTTTGCTACTATTGAGAACTATGGATTCGTGACGGGGCTGGCAT
CATCGCCAGACTCAAAGTTTGGACTTGGACTCGTCGCTATGGCTTTGTTC
CGTGGTTTGTTGGCATTTCCAGTCCACGTCGGGGCGCAGTTCTATGTTGC
CATTGCTGCAGCTCAGTCGTATATCTTTCGTGAGCCGATTGGGGTGATGA
AGTCACTTTTCATTGCTGTTATGTTTCATGGCCTTTTTGATGCCATATCT
TTCTTAATGTTGCTGTTCGTTGGAGTATTGGGAGCTCCTTCCTGGATGAA
CGTGTTTGCTCCTATTCTGCAAAGTTGTTTGACAGTTTTGTTAGTAGTGC
TGTGCCGCGGGCGGTACAAGGCATTGTTGGAAAGAGAAAGAATGGTGTTT
CTGTCTGTTAATCCCGTATAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1122506..1123726-

>Gchil1597.t1 ID=Gchil1597.t1|Name=Gchil1597.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00004403_pilon:1122506..1123726- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCGGAAACGCATTCCGAACCCCAAGACGCAAACTTACCATCCAG
CTCACACGCCGAAGAACCTGAAATGCCACCCACGCACACCTACACAGCAC
CTCCGTCACCAGATGATATCCAAAGGAACCAATCTCTCGCACCATCGTCA
TCACGAATACCATTTTTTGCTTGGCTATGCATTGGTTGCATTCCGTTTTT
ATGGTTGTTTCTCGTTCTCAATTCTCCTCGCCCACTTTACAACATCTTTT
TTACCCTTCTATCAATTCTCCCAGCGATCTTGGTGGGTAAATTCGTACTG
AAGGTATTTGCAGATGAGGCTGTCAGCAAATCTTTTCTAATATCCCAGTT
CCTGTTGGGGGCATTTCCTCTTTCTGTAGTAGTCGTCATTGTGGAAACAG
TTTGGGCTCTGGTTTTCGGGAAAATATTATTTTCATCCGAGATAGTCCAA
TTTAACGAGTTCCTGGGCCTAGATTCCGCCATAGACGGCAAACCTCCATC
CGGAACTGGTGTGAACAGAATGATAAGGGAAATTCATTCAACGTTCGCAT
CTTCTGGCGACTCTCTCGGCAAAAGTCCAGATCCAGACAAGATACTCGAA
TATCTACGAGAGCACGTCCCTCTGTGGAAAATGATCGTATTTGCGCTTTT
CTTTGCGTTCATTGTCGCTGGGTTAACGGAGGAAGTTGCCAAATGGACGC
TTGCTCGCCGGTATAGGGTGGTAAACAAGATGGCTGAGAACTTAGAATGG
GATCGTCGTATTTCTTGCAGAGGTATTCTTTCAGTTGCATGTACGGGAGC
TCTTGGGTTTGCTACTATTGAGAACTATGGATTCGTGACGGGGCTGGCAT
CATCGCCAGACTCAAAGTTTGGACTTGGACTCGTCGCTATGGCTTTGTTC
CGTGGTTTGTTGGCATTTCCAGTCCACGTCGGGGCGCAGTTCTATGTTGC
CATTGCTGCAGCTCAGTCGTATATCTTTCGTGAGCCGATTGGGGTGATGA
AGTCACTTTTCATTGCTGTTATGTTTCATGGCCTTTTTGATGCCATATCT
TTCTTAATGTTGCTGTTCGTTGGAGTATTGGGAGCTCCTTCCTGGATGAA
CGTGTTTGCTCCTATTCTGCAAAGTTGTTTGACAGTTTTGTTAGTAGTGC
TGTGCCGCGGGCGGTACAAGGCATTGTTGGAAAGAGAAAGAATGGTGTTT
CTGTCTGTTAATCCCGTATAA
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