Gchil1596.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1596.t1
Unique NameGchil1596.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1120511..1120987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP191CT
Preferred nameHLIP
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035
Evalue6.85e-23
EggNOG OGs2CXIH@1|root,2RXUG@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1596Gchil1596Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1120511..1120987 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1596.t1.stop1Gchil1596.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1120511..1120513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1596.t1.CDS1Gchil1596.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1120511..1120987 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1596.t1.exon1Gchil1596.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1120511..1120987 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1596.t1.start1Gchil1596.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1120985..1120987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1596.t1Gchil1596.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1120511..1120987 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1596.t1 ID=Gchil1596.t1|Name=Gchil1596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=159bp
MASQPAFLTPSTVAFTRFRQSQTCRSPATSRVAIRRLRASATDPERPKNV
QASDPPPSEPVTPPEPVFEEQVPGKIQLDEITLAKQRTALEEYSRQLRAK
RLEEEREASRLFGWVPYAETLNGRLAMFFILTGLLTEYWTGYTLPEQVEL
MLRTLGIL*
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spliced messenger RNA

>Gchil1596.t1 ID=Gchil1596.t1|Name=Gchil1596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00004403_pilon:1120511..1120987- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTCAACCGGCCTTTCTCACCCCTTCAACTGTTGCGTTCACCCG
TTTCCGACAGTCTCAGACATGTCGGAGCCCCGCCACCTCGCGTGTAGCCA
TTCGTCGTCTCCGTGCCTCAGCTACCGATCCGGAGCGGCCCAAGAATGTT
CAAGCATCTGATCCGCCACCATCTGAGCCAGTCACACCTCCTGAACCTGT
ATTCGAGGAGCAAGTGCCCGGCAAAATTCAACTTGACGAAATCACCCTGG
CCAAGCAACGCACGGCATTAGAAGAGTATTCGCGACAGCTTCGTGCAAAA
CGTTTAGAAGAAGAGCGGGAGGCCTCAAGGCTATTTGGATGGGTGCCATA
TGCGGAGACTCTGAATGGACGTCTGGCCATGTTTTTTATCCTTACTGGCT
TGTTAACCGAATATTGGACGGGGTACACTCTTCCGGAACAGGTCGAATTG
ATGCTACGTACGTTGGGAATCCTTTAA
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protein sequence of Gchil1596.t1

>Gchil1596.t1 ID=Gchil1596.t1|Name=Gchil1596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=159bp
MASQPAFLTPSTVAFTRFRQSQTCRSPATSRVAIRRLRASATDPERPKNV
QASDPPPSEPVTPPEPVFEEQVPGKIQLDEITLAKQRTALEEYSRQLRAK
RLEEEREASRLFGWVPYAETLNGRLAMFFILTGLLTEYWTGYTLPEQVEL
MLRTLGIL*
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mRNA from alignment at tig00004403_pilon:1120511..1120987-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1596.t1 ID=Gchil1596.t1|Name=Gchil1596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00004403_pilon:1120511..1120987- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTCAACCGGCCTTTCTCACCCCTTCAACTGTTGCGTTCACCCG
TTTCCGACAGTCTCAGACATGTCGGAGCCCCGCCACCTCGCGTGTAGCCA
TTCGTCGTCTCCGTGCCTCAGCTACCGATCCGGAGCGGCCCAAGAATGTT
CAAGCATCTGATCCGCCACCATCTGAGCCAGTCACACCTCCTGAACCTGT
ATTCGAGGAGCAAGTGCCCGGCAAAATTCAACTTGACGAAATCACCCTGG
CCAAGCAACGCACGGCATTAGAAGAGTATTCGCGACAGCTTCGTGCAAAA
CGTTTAGAAGAAGAGCGGGAGGCCTCAAGGCTATTTGGATGGGTGCCATA
TGCGGAGACTCTGAATGGACGTCTGGCCATGTTTTTTATCCTTACTGGCT
TGTTAACCGAATATTGGACGGGGTACACTCTTCCGGAACAGGTCGAATTG
ATGCTACGTACGTTGGGAATCCTTTAA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1120511..1120987-

>Gchil1596.t1 ID=Gchil1596.t1|Name=Gchil1596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00004403_pilon:1120511..1120987- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTCAACCGGCCTTTCTCACCCCTTCAACTGTTGCGTTCACCCG
TTTCCGACAGTCTCAGACATGTCGGAGCCCCGCCACCTCGCGTGTAGCCA
TTCGTCGTCTCCGTGCCTCAGCTACCGATCCGGAGCGGCCCAAGAATGTT
CAAGCATCTGATCCGCCACCATCTGAGCCAGTCACACCTCCTGAACCTGT
ATTCGAGGAGCAAGTGCCCGGCAAAATTCAACTTGACGAAATCACCCTGG
CCAAGCAACGCACGGCATTAGAAGAGTATTCGCGACAGCTTCGTGCAAAA
CGTTTAGAAGAAGAGCGGGAGGCCTCAAGGCTATTTGGATGGGTGCCATA
TGCGGAGACTCTGAATGGACGTCTGGCCATGTTTTTTATCCTTACTGGCT
TGTTAACCGAATATTGGACGGGGTACACTCTTCCGGAACAGGTCGAATTG
ATGCTACGTACGTTGGGAATCCTTTAA
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