Gchil1559.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1559.t1
Unique Name	Gchil1559.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	434

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:928058..929359 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1120971.AUCA01000015_gene313
Preferred name	araE
PFAMs	Sugar_tr
Max annot lvl	91061\|Bacilli
KEGG ko	ko:K02100
KEGG TC	2.A.1.1.2
GOs	GO:0003674,GO:0005215,GO:0005351,GO:0005402,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0008643,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0016020,GO:0022804,GO:0022857,GO:0022890,GO:0034219,GO:0034220,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:1902600
Evalue	9.04e-50
EggNOG OGs	COG0477@1\|root,COG2814@2\|Bacteria,1TREV@1239\|Firmicutes,4HAN1@91061\|Bacilli
Description	Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1559	Gchil1559	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 928058..929359 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1559.t1.stop1	Gchil1559.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 928058..928060 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1559.t1.CDS1	Gchil1559.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 928058..929359 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1559.t1.exon1	Gchil1559.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 928058..929359 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1559.t1.start1	Gchil1559.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 929357..929359 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1559.t1	Gchil1559.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 928058..929359 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:928058..929359-
coding sequence from alignment at tig00004403_pilon:928058..929359-

mRNA sequence

>Gchil1559.t1 ID=Gchil1559.t1|Name=Gchil1559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=434bp
MLPRYRPTSPIKRRIMVTSTRLWAMCFSANLGGLLVGLHLALFSGILEMP
SFASEMPFHLTPYTKSVITSALIMGFIAGAVPAGPMCDKLGRRKALIIAA
LLFLVSTIAMASSKTLYQLLLFRFVAGLGYAVANVTCTLYTAEIAPPEIR
GVLVNLYQLLITLGIFSAQAVNALTWEHSHWSLPIWIAAIPAAIMLLLVA
LLVTESHVWESSPCSTETNISLLDALRNPSGRKRLLIGSTLAVAQQMTGI
NAVIFFGPALVSDVLKLQSSSAPFIAAACVGAANFLATVVSLTAIERFGR
KVLLLTAGPPMICSLLVLGAMRSEVIPVSSVIGLGALLLFIVSFAITYGP
VPFLIIAEIFPVEYKGVAMGFCSLLLATFSLAIGASFLSALNVFGGSVYF
LFASCVALSSCFVYAKVPETRNLTLTEVDQLLS*

spliced messenger RNA

>Gchil1559.t1 ID=Gchil1559.t1|Name=Gchil1559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00004403_pilon:928058..929359- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCGCGATACCGCCCAACCTCCCCAATCAAGCGAAGAATTATGGT
CACCTCAACGCGTTTGTGGGCCATGTGCTTCTCGGCAAATCTCGGCGGTT
TACTTGTCGGTCTGCACCTCGCACTGTTTTCCGGAATTCTTGAGATGCCA
TCGTTTGCTTCTGAGATGCCGTTTCATCTAACCCCCTACACCAAATCTGT
CATTACCTCCGCACTAATCATGGGGTTTATTGCCGGTGCCGTTCCGGCGG
GGCCTATGTGCGACAAATTGGGACGGCGCAAAGCGCTCATTATTGCTGCT
CTGCTTTTCTTGGTATCCACCATCGCAATGGCTTCTTCCAAAACCCTGTA
CCAGCTTCTTCTCTTTCGATTTGTCGCAGGTCTTGGGTACGCGGTGGCAA
ATGTCACATGCACTCTCTACACGGCCGAGATAGCACCGCCTGAAATACGT
GGTGTGTTGGTCAATCTGTATCAACTGTTGATCACCCTTGGTATTTTTTC
CGCGCAGGCCGTGAATGCACTTACGTGGGAACATAGTCATTGGAGTTTAC
CTATTTGGATCGCTGCAATCCCCGCTGCAATAATGCTACTACTCGTTGCG
CTTCTAGTCACCGAATCTCACGTATGGGAGAGCAGTCCGTGCTCTACGGA
AACAAATATATCCTTGCTAGACGCTTTAAGAAACCCTTCAGGGCGAAAAA
GGCTACTGATTGGAAGCACATTAGCTGTGGCGCAGCAAATGACCGGAATC
AACGCTGTTATCTTTTTCGGGCCTGCTCTCGTGTCAGATGTTCTCAAACT
TCAAAGCTCCAGCGCCCCATTCATAGCAGCCGCTTGTGTAGGGGCTGCCA
ACTTCCTCGCCACAGTTGTATCACTCACCGCTATTGAACGATTTGGGCGA
AAAGTTCTACTACTGACAGCCGGCCCCCCCATGATCTGTAGTTTGCTTGT
GTTGGGAGCGATGCGAAGTGAAGTGATTCCCGTTAGCAGTGTTATCGGTT
TAGGAGCGTTGCTTTTGTTTATTGTATCATTTGCTATTACATACGGTCCT
GTGCCGTTCCTAATCATCGCTGAGATATTCCCTGTTGAATACAAGGGAGT
GGCGATGGGTTTTTGTAGCTTGTTGCTAGCGACATTCTCTCTGGCAATTG
GTGCTTCTTTCTTGTCAGCTTTGAATGTATTTGGTGGTTCCGTGTATTTT
CTCTTTGCGTCATGTGTCGCTCTCAGCAGCTGCTTTGTATATGCCAAGGT
TCCAGAAACAAGGAATTTGACCCTCACGGAAGTGGATCAGCTACTATCAT
GA

protein sequence of Gchil1559.t1

>Gchil1559.t1 ID=Gchil1559.t1|Name=Gchil1559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=434bp
MLPRYRPTSPIKRRIMVTSTRLWAMCFSANLGGLLVGLHLALFSGILEMP
SFASEMPFHLTPYTKSVITSALIMGFIAGAVPAGPMCDKLGRRKALIIAA
LLFLVSTIAMASSKTLYQLLLFRFVAGLGYAVANVTCTLYTAEIAPPEIR
GVLVNLYQLLITLGIFSAQAVNALTWEHSHWSLPIWIAAIPAAIMLLLVA
LLVTESHVWESSPCSTETNISLLDALRNPSGRKRLLIGSTLAVAQQMTGI
NAVIFFGPALVSDVLKLQSSSAPFIAAACVGAANFLATVVSLTAIERFGR
KVLLLTAGPPMICSLLVLGAMRSEVIPVSSVIGLGALLLFIVSFAITYGP
VPFLIIAEIFPVEYKGVAMGFCSLLLATFSLAIGASFLSALNVFGGSVYF
LFASCVALSSCFVYAKVPETRNLTLTEVDQLLS*

mRNA from alignment at tig00004403_pilon:928058..929359-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1559.t1 ID=Gchil1559.t1|Name=Gchil1559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00004403_pilon:928058..929359- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCGCGATACCGCCCAACCTCCCCAATCAAGCGAAGAATTATGGT
CACCTCAACGCGTTTGTGGGCCATGTGCTTCTCGGCAAATCTCGGCGGTT
TACTTGTCGGTCTGCACCTCGCACTGTTTTCCGGAATTCTTGAGATGCCA
TCGTTTGCTTCTGAGATGCCGTTTCATCTAACCCCCTACACCAAATCTGT
CATTACCTCCGCACTAATCATGGGGTTTATTGCCGGTGCCGTTCCGGCGG
GGCCTATGTGCGACAAATTGGGACGGCGCAAAGCGCTCATTATTGCTGCT
CTGCTTTTCTTGGTATCCACCATCGCAATGGCTTCTTCCAAAACCCTGTA
CCAGCTTCTTCTCTTTCGATTTGTCGCAGGTCTTGGGTACGCGGTGGCAA
ATGTCACATGCACTCTCTACACGGCCGAGATAGCACCGCCTGAAATACGT
GGTGTGTTGGTCAATCTGTATCAACTGTTGATCACCCTTGGTATTTTTTC
CGCGCAGGCCGTGAATGCACTTACGTGGGAACATAGTCATTGGAGTTTAC
CTATTTGGATCGCTGCAATCCCCGCTGCAATAATGCTACTACTCGTTGCG
CTTCTAGTCACCGAATCTCACGTATGGGAGAGCAGTCCGTGCTCTACGGA
AACAAATATATCCTTGCTAGACGCTTTAAGAAACCCTTCAGGGCGAAAAA
GGCTACTGATTGGAAGCACATTAGCTGTGGCGCAGCAAATGACCGGAATC
AACGCTGTTATCTTTTTCGGGCCTGCTCTCGTGTCAGATGTTCTCAAACT
TCAAAGCTCCAGCGCCCCATTCATAGCAGCCGCTTGTGTAGGGGCTGCCA
ACTTCCTCGCCACAGTTGTATCACTCACCGCTATTGAACGATTTGGGCGA
AAAGTTCTACTACTGACAGCCGGCCCCCCCATGATCTGTAGTTTGCTTGT
GTTGGGAGCGATGCGAAGTGAAGTGATTCCCGTTAGCAGTGTTATCGGTT
TAGGAGCGTTGCTTTTGTTTATTGTATCATTTGCTATTACATACGGTCCT
GTGCCGTTCCTAATCATCGCTGAGATATTCCCTGTTGAATACAAGGGAGT
GGCGATGGGTTTTTGTAGCTTGTTGCTAGCGACATTCTCTCTGGCAATTG
GTGCTTCTTTCTTGTCAGCTTTGAATGTATTTGGTGGTTCCGTGTATTTT
CTCTTTGCGTCATGTGTCGCTCTCAGCAGCTGCTTTGTATATGCCAAGGT
TCCAGAAACAAGGAATTTGACCCTCACGGAAGTGGATCAGCTACTATCAT
GA

Coding sequence (CDS) from alignment at tig00004403_pilon:928058..929359-

>Gchil1559.t1 ID=Gchil1559.t1|Name=Gchil1559.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00004403_pilon:928058..929359- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCCGCGATACCGCCCAACCTCCCCAATCAAGCGAAGAATTATGGT
CACCTCAACGCGTTTGTGGGCCATGTGCTTCTCGGCAAATCTCGGCGGTT
TACTTGTCGGTCTGCACCTCGCACTGTTTTCCGGAATTCTTGAGATGCCA
TCGTTTGCTTCTGAGATGCCGTTTCATCTAACCCCCTACACCAAATCTGT
CATTACCTCCGCACTAATCATGGGGTTTATTGCCGGTGCCGTTCCGGCGG
GGCCTATGTGCGACAAATTGGGACGGCGCAAAGCGCTCATTATTGCTGCT
CTGCTTTTCTTGGTATCCACCATCGCAATGGCTTCTTCCAAAACCCTGTA
CCAGCTTCTTCTCTTTCGATTTGTCGCAGGTCTTGGGTACGCGGTGGCAA
ATGTCACATGCACTCTCTACACGGCCGAGATAGCACCGCCTGAAATACGT
GGTGTGTTGGTCAATCTGTATCAACTGTTGATCACCCTTGGTATTTTTTC
CGCGCAGGCCGTGAATGCACTTACGTGGGAACATAGTCATTGGAGTTTAC
CTATTTGGATCGCTGCAATCCCCGCTGCAATAATGCTACTACTCGTTGCG
CTTCTAGTCACCGAATCTCACGTATGGGAGAGCAGTCCGTGCTCTACGGA
AACAAATATATCCTTGCTAGACGCTTTAAGAAACCCTTCAGGGCGAAAAA
GGCTACTGATTGGAAGCACATTAGCTGTGGCGCAGCAAATGACCGGAATC
AACGCTGTTATCTTTTTCGGGCCTGCTCTCGTGTCAGATGTTCTCAAACT
TCAAAGCTCCAGCGCCCCATTCATAGCAGCCGCTTGTGTAGGGGCTGCCA
ACTTCCTCGCCACAGTTGTATCACTCACCGCTATTGAACGATTTGGGCGA
AAAGTTCTACTACTGACAGCCGGCCCCCCCATGATCTGTAGTTTGCTTGT
GTTGGGAGCGATGCGAAGTGAAGTGATTCCCGTTAGCAGTGTTATCGGTT
TAGGAGCGTTGCTTTTGTTTATTGTATCATTTGCTATTACATACGGTCCT
GTGCCGTTCCTAATCATCGCTGAGATATTCCCTGTTGAATACAAGGGAGT
GGCGATGGGTTTTTGTAGCTTGTTGCTAGCGACATTCTCTCTGGCAATTG
GTGCTTCTTTCTTGTCAGCTTTGAATGTATTTGGTGGTTCCGTGTATTTT
CTCTTTGCGTCATGTGTCGCTCTCAGCAGCTGCTTTGTATATGCCAAGGT
TCCAGAAACAAGGAATTTGACCCTCACGGAAGTGGATCAGCTACTATCAT
GA