Gchil1553.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1553.t1
Unique NameGchil1553.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:847197..847721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9258.ENSOANP00000016115
Preferred nameFAM206A
PFAMsGCV_H
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0016604,GO:0016607,GO:0030425,GO:0031974,GO:0031981,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0070013,GO:0097447,GO:0097458,GO:0120025,GO:0120038
Evalue1.1e-29
EggNOG OGsKOG3266@1|root,KOG3266@2759|Eukaryota,39WMQ@33154|Opisthokonta,3BN76@33208|Metazoa,3D1ST@33213|Bilateria,4864Y@7711|Chordata,4937F@7742|Vertebrata,3JA7Q@40674|Mammalia
DescriptionGlycine cleavage H-protein
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1553Gchil1553Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 847197..847721 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1553.t1.start1Gchil1553.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 847197..847199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1553.t1.CDS1Gchil1553.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 847197..847721 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1553.t1.exon1Gchil1553.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 847197..847721 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1553.t1.stop1Gchil1553.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 847719..847721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1553.t1Gchil1553.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 847197..847721 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1553.t1 ID=Gchil1553.t1|Name=Gchil1553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=175bp
MHRVVPPGTIERYFTLHYAPGFARLLAPRTKPPPRGEDLCVARHHNGICV
LCLSPQHPIVTQRKAVQAVDYRVEMRQVTGKRKKGGIVVEEKTRLCTITC
DAGERYAVQCAIKGTLLEYNDSLANNASLVNESPLTEGYLGIVLPWPSQI
KTAVDALMSSTDYEKLGDTSEDWR*
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spliced messenger RNA

>Gchil1553.t1 ID=Gchil1553.t1|Name=Gchil1553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00004403_pilon:847197..847721+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCGTGGTGCCACCCGGAACAATCGAGCGATACTTCACCTTGCA
CTACGCTCCGGGTTTCGCTCGTTTGCTGGCACCGAGAACGAAGCCGCCAC
CTCGCGGCGAAGATCTGTGCGTAGCGCGCCATCACAACGGAATCTGCGTC
CTGTGTTTGTCGCCACAACATCCCATCGTTACCCAGAGGAAAGCAGTTCA
GGCGGTGGACTATCGCGTGGAAATGCGCCAAGTGACAGGTAAGCGAAAGA
AAGGCGGCATCGTGGTGGAGGAAAAGACGCGATTGTGTACTATCACATGT
GATGCTGGCGAACGGTACGCTGTGCAGTGTGCAATCAAAGGGACTCTTCT
TGAGTATAATGATTCCCTGGCAAATAACGCTTCTCTGGTCAATGAGTCAC
CGTTGACAGAAGGCTATCTGGGTATCGTGCTTCCGTGGCCGTCTCAAATC
AAAACTGCCGTCGATGCGTTGATGTCTTCGACAGACTACGAAAAGCTCGG
TGATACAAGCGAAGATTGGAGGTAG
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protein sequence of Gchil1553.t1

>Gchil1553.t1 ID=Gchil1553.t1|Name=Gchil1553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=175bp
MHRVVPPGTIERYFTLHYAPGFARLLAPRTKPPPRGEDLCVARHHNGICV
LCLSPQHPIVTQRKAVQAVDYRVEMRQVTGKRKKGGIVVEEKTRLCTITC
DAGERYAVQCAIKGTLLEYNDSLANNASLVNESPLTEGYLGIVLPWPSQI
KTAVDALMSSTDYEKLGDTSEDWR*
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mRNA from alignment at tig00004403_pilon:847197..847721+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1553.t1 ID=Gchil1553.t1|Name=Gchil1553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00004403_pilon:847197..847721+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGCGTGGTGCCACCCGGAACAATCGAGCGATACTTCACCTTGCA
CTACGCTCCGGGTTTCGCTCGTTTGCTGGCACCGAGAACGAAGCCGCCAC
CTCGCGGCGAAGATCTGTGCGTAGCGCGCCATCACAACGGAATCTGCGTC
CTGTGTTTGTCGCCACAACATCCCATCGTTACCCAGAGGAAAGCAGTTCA
GGCGGTGGACTATCGCGTGGAAATGCGCCAAGTGACAGGTAAGCGAAAGA
AAGGCGGCATCGTGGTGGAGGAAAAGACGCGATTGTGTACTATCACATGT
GATGCTGGCGAACGGTACGCTGTGCAGTGTGCAATCAAAGGGACTCTTCT
TGAGTATAATGATTCCCTGGCAAATAACGCTTCTCTGGTCAATGAGTCAC
CGTTGACAGAAGGCTATCTGGGTATCGTGCTTCCGTGGCCGTCTCAAATC
AAAACTGCCGTCGATGCGTTGATGTCTTCGACAGACTACGAAAAGCTCGG
TGATACAAGCGAAGATTGGAGGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:847197..847721+

>Gchil1553.t1 ID=Gchil1553.t1|Name=Gchil1553.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00004403_pilon:847197..847721+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGCGTGGTGCCACCCGGAACAATCGAGCGATACTTCACCTTGCA
CTACGCTCCGGGTTTCGCTCGTTTGCTGGCACCGAGAACGAAGCCGCCAC
CTCGCGGCGAAGATCTGTGCGTAGCGCGCCATCACAACGGAATCTGCGTC
CTGTGTTTGTCGCCACAACATCCCATCGTTACCCAGAGGAAAGCAGTTCA
GGCGGTGGACTATCGCGTGGAAATGCGCCAAGTGACAGGTAAGCGAAAGA
AAGGCGGCATCGTGGTGGAGGAAAAGACGCGATTGTGTACTATCACATGT
GATGCTGGCGAACGGTACGCTGTGCAGTGTGCAATCAAAGGGACTCTTCT
TGAGTATAATGATTCCCTGGCAAATAACGCTTCTCTGGTCAATGAGTCAC
CGTTGACAGAAGGCTATCTGGGTATCGTGCTTCCGTGGCCGTCTCAAATC
AAAACTGCCGTCGATGCGTTGATGTCTTCGACAGACTACGAAAAGCTCGG
TGATACAAGCGAAGATTGGAGGTAG
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