Gchil1544.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1544.t1
Unique Name	Gchil1544.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	648

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:826333..828276 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8083.ENSXMAP00000009299
PFAMs	DNA_photolyase,FAD_binding_7
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K01669
GOs	GO:0000166,GO:0000719,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003904,GO:0003913,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016829,GO:0016830,GO:0033554,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901265,GO:1901360,GO:1901363
Evalue	1.01e-132
EggNOG OGs	COG0415@1\|root,KOG0133@2759\|Eukaryota,38DIT@33154\|Opisthokonta,3BB38@33208\|Metazoa,3D10Z@33213\|Bilateria,489TJ@7711\|Chordata,497HE@7742\|Vertebrata,4A0TV@7898\|Actinopterygii
EC	4.1.99.3
Description	Cryptochrome
COG category	LT
BRITE	ko00000,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1544	Gchil1544	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 826333..828276 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1544.t1.start1	Gchil1544.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 826333..826335 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1544.t1.CDS1	Gchil1544.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 826333..828276 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1544.t1.exon1	Gchil1544.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 826333..828276 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1544.t1.stop1	Gchil1544.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 828274..828276 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1544.t1	Gchil1544.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 826333..828276 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:826333..828276+
coding sequence from alignment at tig00004403_pilon:826333..828276+

mRNA sequence

>Gchil1544.t1 ID=Gchil1544.t1|Name=Gchil1544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=648bp
MAPSTYGDVPIGTQDHGSMWRAISHIAFAQPLTVQRAHRNYRGVCTILDD
MNRDSERGAARGRNAYKSRGRGRGGGRGRGRDRGRRNADFRPSRVQASVD
PFSGPKVLKHSAPQSLSPESVAVLWLRNDLRIRDNEALVLANTADILVPI
FVFDESKFGIKNASPWGFQRNGPFRTVFMIESVKDIQQSLRLKGNDIIVR
VGSPVKEILDVVKSLSTAGLGPVNVIAHKESTWEETEDEDAIEEGLKKMA
EETATEMSVHWLWGSTMHHVNDVPFNPGGPALPETFTAYRKLVEGRQVPI
RKEISTPERLKPFPLHLKLRTDPYPTLRHDLLVEGLCDPLDHAFPHPLGV
MDFVGGESKGLMRMNEYIWETGFLENYKQTRNESGKRNSSSKFSPWLSLG
CLSPRTLYWQVKEYEEKRVANQSTYWLIFELMTRDYFRWVSTSVGTKLFA
VNGYSGRGSDEKSIFHIDVSSVRPFHRERLRKWIEGKTGAPFVDASMREL
ALTGFMSNRGRQNVASFLIHDLEFPDWRAGAEYFESVLIDHDVAANWGNW
AYLAGVGSDPRGGRKFNVIKQSMDYDPDGWFIHRWCPELVDIPAPMIHEP
HKLPREALADVGITKGETYPNPIVKLPRAPSSRNNETAQERRTGMRT*

spliced messenger RNA

>Gchil1544.t1 ID=Gchil1544.t1|Name=Gchil1544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00004403_pilon:826333..828276+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCTCAACGTACGGTGACGTGCCCATTGGAACCCAGGATCACGG
CTCCATGTGGAGGGCCATTTCGCACATAGCCTTCGCACAACCATTGACAG
TACAGCGAGCCCATCGCAATTATCGCGGCGTTTGCACCATACTTGACGAC
ATGAACCGCGATTCCGAGAGAGGCGCAGCTCGGGGCCGAAATGCGTACAA
GTCGCgagggagagggagaggcggaggcagaggtcgaggtcgagacagag
gcagGAGAAATGCAGACTTTCGTCCATCAAGAGTTCAAGCGTCTGTGGAC
CCATTCTCTGGACCAAAGGTTCTAAAACACTCAGCTCCGCAATCCCTGTC
ACCCGAAAGCGTTGCTGTTCTATGGTTGCGCAACGATCTTCGTATTCGGG
ACAATGAGGCCCTGGTCCTGGCAAACACTGCAGATATACTCGTACCGATT
TTCGTCTTCGATGAGTCTAAGTTCGGGATAAAGAATGCGTCACCATGGGG
CTTTCAACGAAACGGGCCGTTTCGAACGGTGTTCATGATAGAATCGGTGA
AGGATATACAACAATCCCTACGTCTGAAAGGAAACGATATAATAGTGCGC
GTTGGTTCTCCCGTCAAAGAAATCCTTGATGTCGTGAAATCTTTGTCAAC
GGCCGGGCTTGGTCCTGTCAACGTTATTGCTCACAAAGAATCAACCTGGG
AAGAGACCGAAGACGAAGATGCAATCGAGGAAGGCCTGAAAAAGATGGCT
GAAGAAACCGCCACGGAGATGTCTGTGCATTGGTTGTGGGGATCGACGAT
GCATCACGTAAATGACGTGCCTTTTAATCCTGGAGGTCCAGCTCTGCCCG
AAACTTTTACTGCGTACCGTAAGTTGGTAGAGGGACGACAAGTTCCCATC
CGCAAAGAGATTTCAACCCCTGAACGTCTGAAACCATTTCCTTTACATTT
GAAGCTGCGAACGGATCCTTACCCGACTCTGAGACACGATTTGCTGGTTG
AAGGCCTTTGTGATCCACTGGATCACGCATTCCCACATCCGCTGGGTGTA
ATGGATTTTGTGGGCGGAGAATCAAAAGGCCTAATGCGAATGAATGAATA
CATTTGGGAGACCGGGTTCTTGGAGAACTACAAACAAACTCGCAATGAAA
GTGGCAAGAGGAATTCTTCTTCAAAGTTTTCCCCGTGGTTATCTCTCGGT
TGCCTTTCACCTCGGACTTTGTATTGGCAAGTAAAGGAGTATGAAGAAAA
GAGAGTTGCAAACCAGTCTACGTACTGGCTGATCTTTGAATTAATGACGC
GTGATTATTTTCGATGGGTTTCCACTTCTGTGGGAACCAAACTGTTTGCC
GTGAATGGTTATTCGGGAAGAGGTTCAGACGAGAAGAGCATATTCCATAT
CGATGTTTCCTCAGTAAGACCATTTCATCGCGAAAGGTTACGAAAATGGA
TCGAAGGGAAGACTGGCGCTCCGTTTGTTGATGCAAGCATGCGTGAGCTT
GCTTTGACGGGATTCATGAGCAACCGCGGAAGACAAAATGTGGCATCATT
TCTTATTCATGATCTTGAGTTTCCGGACTGGAGAGCAGGAGCTGAATACT
TCGAAAGCGTTCTCATAGACCACGATGTGGCTGCCAACTGGGGTAACTGG
GCATATCTTGCCGGAGTTGGCAGTGATCCACGTGGAGGTCGAAAATTTAA
CGTCATAAAGCAAAGTATGGACTACGACCCTGATGGATGGTTCATTCACC
GATGGTGTCCTGAACTTGTCGACATACCTGCACCGATGATTCACGAACCA
CACAAGCTGCCTCGCGAAGCTCTCGCAGATGTTGGTATTACCAAGGGCGA
AACGTATCCTAATCCAATTGTGAAGCTTCCCAGGGCACCAAGTTCACGAA
ACAATGAAACCGCCCAAGAGAGAAGAACAGGAATGCGAACTTGA

protein sequence of Gchil1544.t1

>Gchil1544.t1 ID=Gchil1544.t1|Name=Gchil1544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=648bp
MAPSTYGDVPIGTQDHGSMWRAISHIAFAQPLTVQRAHRNYRGVCTILDD
MNRDSERGAARGRNAYKSRGRGRGGGRGRGRDRGRRNADFRPSRVQASVD
PFSGPKVLKHSAPQSLSPESVAVLWLRNDLRIRDNEALVLANTADILVPI
FVFDESKFGIKNASPWGFQRNGPFRTVFMIESVKDIQQSLRLKGNDIIVR
VGSPVKEILDVVKSLSTAGLGPVNVIAHKESTWEETEDEDAIEEGLKKMA
EETATEMSVHWLWGSTMHHVNDVPFNPGGPALPETFTAYRKLVEGRQVPI
RKEISTPERLKPFPLHLKLRTDPYPTLRHDLLVEGLCDPLDHAFPHPLGV
MDFVGGESKGLMRMNEYIWETGFLENYKQTRNESGKRNSSSKFSPWLSLG
CLSPRTLYWQVKEYEEKRVANQSTYWLIFELMTRDYFRWVSTSVGTKLFA
VNGYSGRGSDEKSIFHIDVSSVRPFHRERLRKWIEGKTGAPFVDASMREL
ALTGFMSNRGRQNVASFLIHDLEFPDWRAGAEYFESVLIDHDVAANWGNW
AYLAGVGSDPRGGRKFNVIKQSMDYDPDGWFIHRWCPELVDIPAPMIHEP
HKLPREALADVGITKGETYPNPIVKLPRAPSSRNNETAQERRTGMRT*

mRNA from alignment at tig00004403_pilon:826333..828276+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1544.t1 ID=Gchil1544.t1|Name=Gchil1544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00004403_pilon:826333..828276+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCTCAACGTACGGTGACGTGCCCATTGGAACCCAGGATCACGG
CTCCATGTGGAGGGCCATTTCGCACATAGCCTTCGCACAACCATTGACAG
TACAGCGAGCCCATCGCAATTATCGCGGCGTTTGCACCATACTTGACGAC
ATGAACCGCGATTCCGAGAGAGGCGCAGCTCGGGGCCGAAATGCGTACAA
GTCGCgagggagagggagaggcggaggcagaggtcgaggtcgagacagag
gcagGAGAAATGCAGACTTTCGTCCATCAAGAGTTCAAGCGTCTGTGGAC
CCATTCTCTGGACCAAAGGTTCTAAAACACTCAGCTCCGCAATCCCTGTC
ACCCGAAAGCGTTGCTGTTCTATGGTTGCGCAACGATCTTCGTATTCGGG
ACAATGAGGCCCTGGTCCTGGCAAACACTGCAGATATACTCGTACCGATT
TTCGTCTTCGATGAGTCTAAGTTCGGGATAAAGAATGCGTCACCATGGGG
CTTTCAACGAAACGGGCCGTTTCGAACGGTGTTCATGATAGAATCGGTGA
AGGATATACAACAATCCCTACGTCTGAAAGGAAACGATATAATAGTGCGC
GTTGGTTCTCCCGTCAAAGAAATCCTTGATGTCGTGAAATCTTTGTCAAC
GGCCGGGCTTGGTCCTGTCAACGTTATTGCTCACAAAGAATCAACCTGGG
AAGAGACCGAAGACGAAGATGCAATCGAGGAAGGCCTGAAAAAGATGGCT
GAAGAAACCGCCACGGAGATGTCTGTGCATTGGTTGTGGGGATCGACGAT
GCATCACGTAAATGACGTGCCTTTTAATCCTGGAGGTCCAGCTCTGCCCG
AAACTTTTACTGCGTACCGTAAGTTGGTAGAGGGACGACAAGTTCCCATC
CGCAAAGAGATTTCAACCCCTGAACGTCTGAAACCATTTCCTTTACATTT
GAAGCTGCGAACGGATCCTTACCCGACTCTGAGACACGATTTGCTGGTTG
AAGGCCTTTGTGATCCACTGGATCACGCATTCCCACATCCGCTGGGTGTA
ATGGATTTTGTGGGCGGAGAATCAAAAGGCCTAATGCGAATGAATGAATA
CATTTGGGAGACCGGGTTCTTGGAGAACTACAAACAAACTCGCAATGAAA
GTGGCAAGAGGAATTCTTCTTCAAAGTTTTCCCCGTGGTTATCTCTCGGT
TGCCTTTCACCTCGGACTTTGTATTGGCAAGTAAAGGAGTATGAAGAAAA
GAGAGTTGCAAACCAGTCTACGTACTGGCTGATCTTTGAATTAATGACGC
GTGATTATTTTCGATGGGTTTCCACTTCTGTGGGAACCAAACTGTTTGCC
GTGAATGGTTATTCGGGAAGAGGTTCAGACGAGAAGAGCATATTCCATAT
CGATGTTTCCTCAGTAAGACCATTTCATCGCGAAAGGTTACGAAAATGGA
TCGAAGGGAAGACTGGCGCTCCGTTTGTTGATGCAAGCATGCGTGAGCTT
GCTTTGACGGGATTCATGAGCAACCGCGGAAGACAAAATGTGGCATCATT
TCTTATTCATGATCTTGAGTTTCCGGACTGGAGAGCAGGAGCTGAATACT
TCGAAAGCGTTCTCATAGACCACGATGTGGCTGCCAACTGGGGTAACTGG
GCATATCTTGCCGGAGTTGGCAGTGATCCACGTGGAGGTCGAAAATTTAA
CGTCATAAAGCAAAGTATGGACTACGACCCTGATGGATGGTTCATTCACC
GATGGTGTCCTGAACTTGTCGACATACCTGCACCGATGATTCACGAACCA
CACAAGCTGCCTCGCGAAGCTCTCGCAGATGTTGGTATTACCAAGGGCGA
AACGTATCCTAATCCAATTGTGAAGCTTCCCAGGGCACCAAGTTCACGAA
ACAATGAAACCGCCCAAGAGAGAAGAACAGGAATGCGAACTTGA

Coding sequence (CDS) from alignment at tig00004403_pilon:826333..828276+

>Gchil1544.t1 ID=Gchil1544.t1|Name=Gchil1544.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1944bp|location=Sequence derived from alignment at tig00004403_pilon:826333..828276+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCTCAACGTACGGTGACGTGCCCATTGGAACCCAGGATCACGG
CTCCATGTGGAGGGCCATTTCGCACATAGCCTTCGCACAACCATTGACAG
TACAGCGAGCCCATCGCAATTATCGCGGCGTTTGCACCATACTTGACGAC
ATGAACCGCGATTCCGAGAGAGGCGCAGCTCGGGGCCGAAATGCGTACAA
GTCGCgagggagagggagaggcggaggcagaggtcgaggtcgagacagag
gcagGAGAAATGCAGACTTTCGTCCATCAAGAGTTCAAGCGTCTGTGGAC
CCATTCTCTGGACCAAAGGTTCTAAAACACTCAGCTCCGCAATCCCTGTC
ACCCGAAAGCGTTGCTGTTCTATGGTTGCGCAACGATCTTCGTATTCGGG
ACAATGAGGCCCTGGTCCTGGCAAACACTGCAGATATACTCGTACCGATT
TTCGTCTTCGATGAGTCTAAGTTCGGGATAAAGAATGCGTCACCATGGGG
CTTTCAACGAAACGGGCCGTTTCGAACGGTGTTCATGATAGAATCGGTGA
AGGATATACAACAATCCCTACGTCTGAAAGGAAACGATATAATAGTGCGC
GTTGGTTCTCCCGTCAAAGAAATCCTTGATGTCGTGAAATCTTTGTCAAC
GGCCGGGCTTGGTCCTGTCAACGTTATTGCTCACAAAGAATCAACCTGGG
AAGAGACCGAAGACGAAGATGCAATCGAGGAAGGCCTGAAAAAGATGGCT
GAAGAAACCGCCACGGAGATGTCTGTGCATTGGTTGTGGGGATCGACGAT
GCATCACGTAAATGACGTGCCTTTTAATCCTGGAGGTCCAGCTCTGCCCG
AAACTTTTACTGCGTACCGTAAGTTGGTAGAGGGACGACAAGTTCCCATC
CGCAAAGAGATTTCAACCCCTGAACGTCTGAAACCATTTCCTTTACATTT
GAAGCTGCGAACGGATCCTTACCCGACTCTGAGACACGATTTGCTGGTTG
AAGGCCTTTGTGATCCACTGGATCACGCATTCCCACATCCGCTGGGTGTA
ATGGATTTTGTGGGCGGAGAATCAAAAGGCCTAATGCGAATGAATGAATA
CATTTGGGAGACCGGGTTCTTGGAGAACTACAAACAAACTCGCAATGAAA
GTGGCAAGAGGAATTCTTCTTCAAAGTTTTCCCCGTGGTTATCTCTCGGT
TGCCTTTCACCTCGGACTTTGTATTGGCAAGTAAAGGAGTATGAAGAAAA
GAGAGTTGCAAACCAGTCTACGTACTGGCTGATCTTTGAATTAATGACGC
GTGATTATTTTCGATGGGTTTCCACTTCTGTGGGAACCAAACTGTTTGCC
GTGAATGGTTATTCGGGAAGAGGTTCAGACGAGAAGAGCATATTCCATAT
CGATGTTTCCTCAGTAAGACCATTTCATCGCGAAAGGTTACGAAAATGGA
TCGAAGGGAAGACTGGCGCTCCGTTTGTTGATGCAAGCATGCGTGAGCTT
GCTTTGACGGGATTCATGAGCAACCGCGGAAGACAAAATGTGGCATCATT
TCTTATTCATGATCTTGAGTTTCCGGACTGGAGAGCAGGAGCTGAATACT
TCGAAAGCGTTCTCATAGACCACGATGTGGCTGCCAACTGGGGTAACTGG
GCATATCTTGCCGGAGTTGGCAGTGATCCACGTGGAGGTCGAAAATTTAA
CGTCATAAAGCAAAGTATGGACTACGACCCTGATGGATGGTTCATTCACC
GATGGTGTCCTGAACTTGTCGACATACCTGCACCGATGATTCACGAACCA
CACAAGCTGCCTCGCGAAGCTCTCGCAGATGTTGGTATTACCAAGGGCGA
AACGTATCCTAATCCAATTGTGAAGCTTCCCAGGGCACCAAGTTCACGAA
ACAATGAAACCGCCCAAGAGAGAAGAACAGGAATGCGAACTTGA