Gchil1499.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1499.t1
Unique NameGchil1499.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:404829..405713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000015420
PFAMsC2,Copine
Max annot lvl121069|Pythiales
Evalue2.11e-09
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,1MF6I@121069|Pythiales
DescriptionCopine. Source PGD
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1499Gchil1499Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 404829..405713 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1499.t1.stop1Gchil1499.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 404829..404831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1499.t1.CDS1Gchil1499.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 404829..405713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1499.t1.exon1Gchil1499.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 404829..405713 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1499.t1.start1Gchil1499.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 405711..405713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1499.t1Gchil1499.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 404829..405713 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1499.t1 ID=Gchil1499.t1|Name=Gchil1499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=295bp
MDTSTFRYYELKIAAKRLPGRMLRIDPIAVVFSKDGSSSEWTELGRTEKR
LNEWNPKFSNPIVLPADNDNQRRVDLRVDFYNKEVKDGRFLGAAEVNIFS
LIFAKGQPVELELKTPDATKGSPRVFLTALEGFRTESEPSSVKLSFQLMQ
TNFYGVSMRVFYEISRAGEGLWHPVFKSSHILLDQQGWGQFPTHEISMRD
LTMDVESQGILISLYRYRRIGTRKLLGHFQTSVKELTRTSAGDFIPFSAN
PNEDILSADVQVLHTQKNGLLYEFGLKLINVQWNATNLLENRVK*
back to top

spliced messenger RNA

>Gchil1499.t1 ID=Gchil1499.t1|Name=Gchil1499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004403_pilon:404829..405713- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACGTCTACTTTTCGTTACTATGAACTCAAAATCGCCGCGAAACG
CCTTCCAGGTCGAATGCTTCGGATTGACCCCATAGCAGTGGTTTTCTCGA
AGGATGGCTCAAGTTCAGAGTGGACGGAATTGGGTCGCACCGAGAAGAGG
TTAAATGAATGGAACCCCAAATTCTCTAATCCCATAGTCTTACCCGCCGA
CAACGACAACCAACGTCGAGTTGATCTGAGAGTCGATTTCTATAATAAAG
AAGTCAAAGATGGGCGATTCTTAGGTGCAGCCGAAGTAAACATTTTTTCC
CTCATCTTCGCCAAAGGACAGCCGGTTGAACTCGAGTTAAAGACACCGGA
TGCAACAAAAGGGAGTCCGCGGGTATTCCTAACGGCCTTGGAAGGGTTTA
GAACCGAATCAGAACCATCGTCTGTTAAACTGAGCTTCCAACTCATGCAG
ACGAACTTCTATGGAGTGAGCATGCGAGTGTTTTACGAAATTTCAAGGGC
GGGGGAGGGTTTATGGCACCCGGTGTTCAAGAGCTCCCACATCCTCCTTG
ACCAGCAGGGTTGGGGCCAATTCCCAACACATGAAATTTCCATGCGCGAC
TTGACAATGGACGTCGAAAGTCAAGGGATACTCATCAGCCTCTATCGCTA
CCGGCGCATTGGAACGCGTAAACTTCTGGGTCACTTCCAAACTTCAGTCA
AGGAATTGACGAGAACAAGTGCAGGTGATTTCATTCCATTCTCAGCAAAT
CCAAACGAGGACATTTTGTCGGCGGACGTGCAAGTTCTTCATACACAGAA
AAATGGTCTTCTATACGAATTCGGTCTGAAGCTTATCAATGTTCAGTGGA
ATGCCACTAACCTTTTAGAGAACCGTGTCAAGTAG
back to top

protein sequence of Gchil1499.t1

>Gchil1499.t1 ID=Gchil1499.t1|Name=Gchil1499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=295bp
MDTSTFRYYELKIAAKRLPGRMLRIDPIAVVFSKDGSSSEWTELGRTEKR
LNEWNPKFSNPIVLPADNDNQRRVDLRVDFYNKEVKDGRFLGAAEVNIFS
LIFAKGQPVELELKTPDATKGSPRVFLTALEGFRTESEPSSVKLSFQLMQ
TNFYGVSMRVFYEISRAGEGLWHPVFKSSHILLDQQGWGQFPTHEISMRD
LTMDVESQGILISLYRYRRIGTRKLLGHFQTSVKELTRTSAGDFIPFSAN
PNEDILSADVQVLHTQKNGLLYEFGLKLINVQWNATNLLENRVK*
back to top

mRNA from alignment at tig00004403_pilon:404829..405713-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1499.t1 ID=Gchil1499.t1|Name=Gchil1499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004403_pilon:404829..405713- (Gracilaria chilensis NLEC103_M9 male)
ATGGATACGTCTACTTTTCGTTACTATGAACTCAAAATCGCCGCGAAACG
CCTTCCAGGTCGAATGCTTCGGATTGACCCCATAGCAGTGGTTTTCTCGA
AGGATGGCTCAAGTTCAGAGTGGACGGAATTGGGTCGCACCGAGAAGAGG
TTAAATGAATGGAACCCCAAATTCTCTAATCCCATAGTCTTACCCGCCGA
CAACGACAACCAACGTCGAGTTGATCTGAGAGTCGATTTCTATAATAAAG
AAGTCAAAGATGGGCGATTCTTAGGTGCAGCCGAAGTAAACATTTTTTCC
CTCATCTTCGCCAAAGGACAGCCGGTTGAACTCGAGTTAAAGACACCGGA
TGCAACAAAAGGGAGTCCGCGGGTATTCCTAACGGCCTTGGAAGGGTTTA
GAACCGAATCAGAACCATCGTCTGTTAAACTGAGCTTCCAACTCATGCAG
ACGAACTTCTATGGAGTGAGCATGCGAGTGTTTTACGAAATTTCAAGGGC
GGGGGAGGGTTTATGGCACCCGGTGTTCAAGAGCTCCCACATCCTCCTTG
ACCAGCAGGGTTGGGGCCAATTCCCAACACATGAAATTTCCATGCGCGAC
TTGACAATGGACGTCGAAAGTCAAGGGATACTCATCAGCCTCTATCGCTA
CCGGCGCATTGGAACGCGTAAACTTCTGGGTCACTTCCAAACTTCAGTCA
AGGAATTGACGAGAACAAGTGCAGGTGATTTCATTCCATTCTCAGCAAAT
CCAAACGAGGACATTTTGTCGGCGGACGTGCAAGTTCTTCATACACAGAA
AAATGGTCTTCTATACGAATTCGGTCTGAAGCTTATCAATGTTCAGTGGA
ATGCCACTAACCTTTTAGAGAACCGTGTCAAGTAG
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:404829..405713-

>Gchil1499.t1 ID=Gchil1499.t1|Name=Gchil1499.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00004403_pilon:404829..405713- (Gracilaria chilensis NLEC103_M9 male)
ATGGATACGTCTACTTTTCGTTACTATGAACTCAAAATCGCCGCGAAACG
CCTTCCAGGTCGAATGCTTCGGATTGACCCCATAGCAGTGGTTTTCTCGA
AGGATGGCTCAAGTTCAGAGTGGACGGAATTGGGTCGCACCGAGAAGAGG
TTAAATGAATGGAACCCCAAATTCTCTAATCCCATAGTCTTACCCGCCGA
CAACGACAACCAACGTCGAGTTGATCTGAGAGTCGATTTCTATAATAAAG
AAGTCAAAGATGGGCGATTCTTAGGTGCAGCCGAAGTAAACATTTTTTCC
CTCATCTTCGCCAAAGGACAGCCGGTTGAACTCGAGTTAAAGACACCGGA
TGCAACAAAAGGGAGTCCGCGGGTATTCCTAACGGCCTTGGAAGGGTTTA
GAACCGAATCAGAACCATCGTCTGTTAAACTGAGCTTCCAACTCATGCAG
ACGAACTTCTATGGAGTGAGCATGCGAGTGTTTTACGAAATTTCAAGGGC
GGGGGAGGGTTTATGGCACCCGGTGTTCAAGAGCTCCCACATCCTCCTTG
ACCAGCAGGGTTGGGGCCAATTCCCAACACATGAAATTTCCATGCGCGAC
TTGACAATGGACGTCGAAAGTCAAGGGATACTCATCAGCCTCTATCGCTA
CCGGCGCATTGGAACGCGTAAACTTCTGGGTCACTTCCAAACTTCAGTCA
AGGAATTGACGAGAACAAGTGCAGGTGATTTCATTCCATTCTCAGCAAAT
CCAAACGAGGACATTTTGTCGGCGGACGTGCAAGTTCTTCATACACAGAA
AAATGGTCTTCTATACGAATTCGGTCTGAAGCTTATCAATGTTCAGTGGA
ATGCCACTAACCTTTTAGAGAACCGTGTCAAGTAG
back to top