Gchil1468.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1468.t1
Unique NameGchil1468.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:213789..214337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.NP_001171937.1
Preferred nameshn
PFAMszf-C2H2,zf-met
Max annot lvl33208|Metazoa
KEGG koko:K09239
GOsGO:0000122,GO:0000902,GO:0000904,GO:0000981,GO:0001067,GO:0001085,GO:0001102,GO:0001654,GO:0001655,GO:0001700,GO:0001745,GO:0002009,GO:0002165,GO:0003002,GO:0003156,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003705,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007179,GO:0007275,GO:0007389,GO:0007391,GO:0007398,GO:0007399,GO:0007422,GO:0007423,GO:0007442,GO:0007443,GO:0007444,GO:0007447,GO:0007448,GO:0007450,GO:0007472,GO:0007476,GO:0007494,GO:0007552,GO:0007560,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008285,GO:0008586,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009952,GO:0009953,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016331,GO:0016358,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022008,GO:0022603,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032990,GO:0033613,GO:0034641,GO:0034645,GO:0034654,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035222,GO:0035239,GO:0035295,GO:0042127,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0045704,GO:0045705,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048100,GO:0048190,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048546,GO:0048563,GO:0048565,GO:0048569,GO:0048592,GO:0048598,GO:0048619,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0055123,GO:0060255,GO:0060429,GO:0060562,GO:0061326,GO:0061333,GO:0061525,GO:0065007,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0071704,GO:0071840,GO:0072001,GO:0072002,GO:0080090,GO:0090304,GO:0090596,GO:0097159,GO:0097659,GO:0120036,GO:0120039,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000026,GO:2000027,GO:2000112,GO:2000113,GO:2001141
Evalue6.72e-08
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,38GZU@33154|Opisthokonta,3BEXG@33208|Metazoa,3CXCY@33213|Bilateria
DescriptionHuman immunodeficiency virus type I enhancer binding protein 1
COG categoryK
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1468Gchil1468Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 213789..214337 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1468.t1.stop1Gchil1468.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 213789..213791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1468.t1.CDS1Gchil1468.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 213789..214337 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1468.t1.exon1Gchil1468.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 213789..214337 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1468.t1.start1Gchil1468.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 214335..214337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1468.t1Gchil1468.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 213789..214337 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1468.t1 ID=Gchil1468.t1|Name=Gchil1468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=183bp
MAPTPAPTRRRRGRRTAANSNLQCGVCHQFYSRRDNLRVHQRVHTGERPF
SCRYCMQPFRWQGALRNHEGIHIRNGENPISDISRAVPRAVPQFAYTTPS
HGGAGGAGGVDGAPAERVEMVPGEADSRETHSEMALSAGANVGSESLPLP
LPLPALYTTSQGTGYWADTVLDDLNPRDRSRE*
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spliced messenger RNA

>Gchil1468.t1 ID=Gchil1468.t1|Name=Gchil1468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00004403_pilon:213789..214337- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCCACTCCAGCGCCCACGCGTCGCCGCCGCGGACGCCGCACCGC
AGCAAACTCTAACCTCCAATGCGGTGTATGTCACCAATTTTACTCGCGTC
GTGACAATCTTCGCGTGCACCAGCGCGTGCACACTGGCGAACGTCCATTT
TCATGTCGCTATTGTATGCAGCCGTTCCGCTGGCAGGGGGCGCTTCGAAA
CCACGAGGGGATTCACATACGCAACGGTGAAAATCCCATTTCAGATATTT
CTCGTGCTGTGCCGCGTGCTGTGCCGCAGTTTGCGTACACGACGCCAAGC
CATGGTGGCGCGGGTGGCGCGGGTGGCGTGGATGGAGCGCCGGCCGAGCG
TGTGGAAATGGTGCCTGGTGAAGCGGACAGTCGGGAGACGCACTCGGAAA
TGGCGCTCAGCGCGGGAGCGAACGTAGGGAGTGAGTCGCTGCCGCTGCCG
CTTCCGTTACCGGCACTGTACACCACGTCACAAGGAACGGGCTATTGGGC
CGACACTGTTCTGGATGACCTCAACCCGCGAGACCGATCGCGAGAATAG
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protein sequence of Gchil1468.t1

>Gchil1468.t1 ID=Gchil1468.t1|Name=Gchil1468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=183bp
MAPTPAPTRRRRGRRTAANSNLQCGVCHQFYSRRDNLRVHQRVHTGERPF
SCRYCMQPFRWQGALRNHEGIHIRNGENPISDISRAVPRAVPQFAYTTPS
HGGAGGAGGVDGAPAERVEMVPGEADSRETHSEMALSAGANVGSESLPLP
LPLPALYTTSQGTGYWADTVLDDLNPRDRSRE*
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mRNA from alignment at tig00004403_pilon:213789..214337-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1468.t1 ID=Gchil1468.t1|Name=Gchil1468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00004403_pilon:213789..214337- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACCCACTCCAGCGCCCACGCGTCGCCGCCGCGGACGCCGCACCGC
AGCAAACTCTAACCTCCAATGCGGTGTATGTCACCAATTTTACTCGCGTC
GTGACAATCTTCGCGTGCACCAGCGCGTGCACACTGGCGAACGTCCATTT
TCATGTCGCTATTGTATGCAGCCGTTCCGCTGGCAGGGGGCGCTTCGAAA
CCACGAGGGGATTCACATACGCAACGGTGAAAATCCCATTTCAGATATTT
CTCGTGCTGTGCCGCGTGCTGTGCCGCAGTTTGCGTACACGACGCCAAGC
CATGGTGGCGCGGGTGGCGCGGGTGGCGTGGATGGAGCGCCGGCCGAGCG
TGTGGAAATGGTGCCTGGTGAAGCGGACAGTCGGGAGACGCACTCGGAAA
TGGCGCTCAGCGCGGGAGCGAACGTAGGGAGTGAGTCGCTGCCGCTGCCG
CTTCCGTTACCGGCACTGTACACCACGTCACAAGGAACGGGCTATTGGGC
CGACACTGTTCTGGATGACCTCAACCCGCGAGACCGATCGCGAGAATAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:213789..214337-

>Gchil1468.t1 ID=Gchil1468.t1|Name=Gchil1468.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=549bp|location=Sequence derived from alignment at tig00004403_pilon:213789..214337- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACCCACTCCAGCGCCCACGCGTCGCCGCCGCGGACGCCGCACCGC
AGCAAACTCTAACCTCCAATGCGGTGTATGTCACCAATTTTACTCGCGTC
GTGACAATCTTCGCGTGCACCAGCGCGTGCACACTGGCGAACGTCCATTT
TCATGTCGCTATTGTATGCAGCCGTTCCGCTGGCAGGGGGCGCTTCGAAA
CCACGAGGGGATTCACATACGCAACGGTGAAAATCCCATTTCAGATATTT
CTCGTGCTGTGCCGCGTGCTGTGCCGCAGTTTGCGTACACGACGCCAAGC
CATGGTGGCGCGGGTGGCGCGGGTGGCGTGGATGGAGCGCCGGCCGAGCG
TGTGGAAATGGTGCCTGGTGAAGCGGACAGTCGGGAGACGCACTCGGAAA
TGGCGCTCAGCGCGGGAGCGAACGTAGGGAGTGAGTCGCTGCCGCTGCCG
CTTCCGTTACCGGCACTGTACACCACGTCACAAGGAACGGGCTATTGGGC
CGACACTGTTCTGGATGACCTCAACCCGCGAGACCGATCGCGAGAATAG
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