Gchil1459.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1459.t1
Unique Name	Gchil1459.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:104414..106147 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_91223
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
Evalue	3.08e-39
EggNOG OGs	KOG0603@1\|root,KOG0603@2759\|Eukaryota
Description	protein serine/threonine kinase activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1459	Gchil1459	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 104414..106147 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1459.t1.start1	Gchil1459.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 104414..104416 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1459.t1.CDS1	Gchil1459.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 104414..106147 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1459.t1.exon1	Gchil1459.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 104414..106147 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1459.t1.stop1	Gchil1459.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 106145..106147 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1459.t1	Gchil1459.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 104414..106147 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:104414..106147+
coding sequence from alignment at tig00004403_pilon:104414..106147+

mRNA sequence

>Gchil1459.t1 ID=Gchil1459.t1|Name=Gchil1459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=578bp
MHSPQPHPSESPLTQGSNQFNQLRPSRRLSASELQPQPMPSPLPSQFPSP
LTPQTDAPSAPKPPADATAALTLPAPTRRKHDRHISPSIPESRPTNPTLA
SLSDRIGRRDPSGRARRAKRLRGASPIASSSIASLAELATASPPHQSSSV
ITAANAPRSLRRHRRRASESGVHINSANITVPTERRPLALNDFSLNKMLG
SGGTATVFRAEVLPASPAAAFLPSKELALKVVSKKGLTRRAQHYLTREIA
IHRSLQHPNIASLYEVFEDTAGIYLAMELLRGNDLYTALKRERQGFPEPL
ALQISAQLLDALSYMHSLGYAHRDVKPENIMFTEKPFYSEGKLASVKLID
FGLASARDPSASDKEKLSSEKCGTVRYAAPEIVTETAYVPELCDIWSVGI
VLYSMIAHRNPYTGRTEREVLQQIANTSLSFNTPEWGRVSNDTKLFIRSC
LSLQPSDRPNATRALEEVHRISALLAEKRVDDSFECKDRHADMRVSAKRG
QQDLYREDVSGFSSHVTPDSGASNSRGRTGISSDGNDSPLPSNSADGNGH
TTNFLDGLLAWFSGGSTPERNGSSNTQ*

spliced messenger RNA

>Gchil1459.t1 ID=Gchil1459.t1|Name=Gchil1459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00004403_pilon:104414..106147+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCGCCACAGCCCCACCCCTCCGAAAGTCCCCTAACTCAAGGTTC
TAACCAATTCAACCAGCTACGCCCCAGCCGGCGACTTTCCGCCTCCGAGC
TCCAACCGCAGCCGATGCCCTCTCCGCTGCCCTCCCAATTCCCCTCGCCC
CTCACCCCACAAACAGACGCGCCCTCCGCACCTAAACCCCCCGCCGACGC
CACCGCCGCGCTCACCTTGCCTGCCCCGACCCGCCGGAAACATGATCGCC
ATATCAGCCCGTCCATCCCGGAGTCGCGCCCGACCAACCCCACCCTCGCC
TCCCTGTCAGACCGAATCGGCCGTCGTGACCCGTCTGGTCGCGCCCGAAG
AGCAAAGCGTCTGCGCGGCGCATCTCCCATCGCCTCTTCCTCCATCGCGT
CTCTCGCAGAGCTGGCCACCGCTTCACCCCCGCACCAGTCCTCTTCTGTC
ATAACCGCCGCCAATGCTCCCCGTTCGTTGCGTCGCCATCGCCGCCGCGC
TTCCGAGTCCGGCGTGCATATCAACTCGGCTAATATCACTGTGCCCACCG
AGAGGCGCCCACTGGCCCTCAATGACTTTTCGCTCAACAAGATGCTCGGG
TCGGGCGGGACCGCTACCGTGTTTCGCGCCGAGGTCTTACCTGCTTCCCC
GGCCGCTGCCTTCCTTCCAAGCAAGGAGTTGGCTCTCAAGGTCGTGTCGA
AGAAGGGACTCACTCGTCGCGCCCAGCACTATCTCACCAGGGAGATTGCC
ATTCACCGTAGCTTGCAACATCCAAACATTGCCTCGCTGTACGAGGTATT
TGAGGACACGGCCGGCATCTACCTGGCCATGGAACTTTTGAGGGGCAATG
ACTTGTACACGGCGCTCAAGAGAGAGCGACAGGGCTTTCCAGAGCCTCTT
GCTCTGCAAATTAGTGCTCAGCTGCTGGATGCCTTGAGTTATATGCATTC
GCTCGGCTACGCCCATCGCGACGTCAAGCCGGAGAACATCATGTTTACGG
AAAAGCCCTTCTACTCGGAAGGCAAACTTGCGTCAGTCAAGCTTATTGAC
TTTGGTTTGGCCAGTGCGCGCGACCCCAGCGCCTCGGACAAGGAGAAACT
TAGCTCGGAGAAGTGCGGCACCGTTCGCTATGCCGCCCCGGAAATCGTCA
CCGAGACAGCTTATGTTCCGGAGCTGTGCGATATTTGGAGCGTGGGCATT
GTGCTCTACTCCATGATCGCCCACAGAAACCCGTACACCGGACGTACGGA
GAGGGAGGTTTTGCAACAGATTGCAAACACCTCGCTTTCGTTCAATACTC
CCGAGTGGGGGAGAGTTTCCAACGACACAAAACTGTTTATTCGCTCCTGT
CTTTCGCTTCAGCCTTCCGATCGTCCCAACGCCACTCGCGCGCTGGAAGA
AGTGCACCGAATAAGTGCCTTGCTTGCCGAAAAGCGCGTGGACGACTCCT
TTGAGTGCAAGGACCGCCACGCCGACATGCGTGTCTCGGCAAAGAGAGGC
CAACAAGATCTTTATCGCGAAGACGTTTCTGGCTTTTCCAGCCACGTTAC
CCCCGATTCGGGTGCGAGTAACAGTCGTGGTCGCACTGGCATTTCCAGTG
ATGGCAACGATTCTCCGTTGCCGAGCAATAGTGCAGACGGAAATGGACAT
ACTACCAATTTTCTGGACGGCCTTCTCGCCTGGTTCAGTGGTGGATCTAC
ACCAGAACGAAACGGATCTAGTAATACTCAGTAG

protein sequence of Gchil1459.t1

>Gchil1459.t1 ID=Gchil1459.t1|Name=Gchil1459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=578bp
MHSPQPHPSESPLTQGSNQFNQLRPSRRLSASELQPQPMPSPLPSQFPSP
LTPQTDAPSAPKPPADATAALTLPAPTRRKHDRHISPSIPESRPTNPTLA
SLSDRIGRRDPSGRARRAKRLRGASPIASSSIASLAELATASPPHQSSSV
ITAANAPRSLRRHRRRASESGVHINSANITVPTERRPLALNDFSLNKMLG
SGGTATVFRAEVLPASPAAAFLPSKELALKVVSKKGLTRRAQHYLTREIA
IHRSLQHPNIASLYEVFEDTAGIYLAMELLRGNDLYTALKRERQGFPEPL
ALQISAQLLDALSYMHSLGYAHRDVKPENIMFTEKPFYSEGKLASVKLID
FGLASARDPSASDKEKLSSEKCGTVRYAAPEIVTETAYVPELCDIWSVGI
VLYSMIAHRNPYTGRTEREVLQQIANTSLSFNTPEWGRVSNDTKLFIRSC
LSLQPSDRPNATRALEEVHRISALLAEKRVDDSFECKDRHADMRVSAKRG
QQDLYREDVSGFSSHVTPDSGASNSRGRTGISSDGNDSPLPSNSADGNGH
TTNFLDGLLAWFSGGSTPERNGSSNTQ*

mRNA from alignment at tig00004403_pilon:104414..106147+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1459.t1 ID=Gchil1459.t1|Name=Gchil1459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00004403_pilon:104414..106147+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACTCGCCACAGCCCCACCCCTCCGAAAGTCCCCTAACTCAAGGTTC
TAACCAATTCAACCAGCTACGCCCCAGCCGGCGACTTTCCGCCTCCGAGC
TCCAACCGCAGCCGATGCCCTCTCCGCTGCCCTCCCAATTCCCCTCGCCC
CTCACCCCACAAACAGACGCGCCCTCCGCACCTAAACCCCCCGCCGACGC
CACCGCCGCGCTCACCTTGCCTGCCCCGACCCGCCGGAAACATGATCGCC
ATATCAGCCCGTCCATCCCGGAGTCGCGCCCGACCAACCCCACCCTCGCC
TCCCTGTCAGACCGAATCGGCCGTCGTGACCCGTCTGGTCGCGCCCGAAG
AGCAAAGCGTCTGCGCGGCGCATCTCCCATCGCCTCTTCCTCCATCGCGT
CTCTCGCAGAGCTGGCCACCGCTTCACCCCCGCACCAGTCCTCTTCTGTC
ATAACCGCCGCCAATGCTCCCCGTTCGTTGCGTCGCCATCGCCGCCGCGC
TTCCGAGTCCGGCGTGCATATCAACTCGGCTAATATCACTGTGCCCACCG
AGAGGCGCCCACTGGCCCTCAATGACTTTTCGCTCAACAAGATGCTCGGG
TCGGGCGGGACCGCTACCGTGTTTCGCGCCGAGGTCTTACCTGCTTCCCC
GGCCGCTGCCTTCCTTCCAAGCAAGGAGTTGGCTCTCAAGGTCGTGTCGA
AGAAGGGACTCACTCGTCGCGCCCAGCACTATCTCACCAGGGAGATTGCC
ATTCACCGTAGCTTGCAACATCCAAACATTGCCTCGCTGTACGAGGTATT
TGAGGACACGGCCGGCATCTACCTGGCCATGGAACTTTTGAGGGGCAATG
ACTTGTACACGGCGCTCAAGAGAGAGCGACAGGGCTTTCCAGAGCCTCTT
GCTCTGCAAATTAGTGCTCAGCTGCTGGATGCCTTGAGTTATATGCATTC
GCTCGGCTACGCCCATCGCGACGTCAAGCCGGAGAACATCATGTTTACGG
AAAAGCCCTTCTACTCGGAAGGCAAACTTGCGTCAGTCAAGCTTATTGAC
TTTGGTTTGGCCAGTGCGCGCGACCCCAGCGCCTCGGACAAGGAGAAACT
TAGCTCGGAGAAGTGCGGCACCGTTCGCTATGCCGCCCCGGAAATCGTCA
CCGAGACAGCTTATGTTCCGGAGCTGTGCGATATTTGGAGCGTGGGCATT
GTGCTCTACTCCATGATCGCCCACAGAAACCCGTACACCGGACGTACGGA
GAGGGAGGTTTTGCAACAGATTGCAAACACCTCGCTTTCGTTCAATACTC
CCGAGTGGGGGAGAGTTTCCAACGACACAAAACTGTTTATTCGCTCCTGT
CTTTCGCTTCAGCCTTCCGATCGTCCCAACGCCACTCGCGCGCTGGAAGA
AGTGCACCGAATAAGTGCCTTGCTTGCCGAAAAGCGCGTGGACGACTCCT
TTGAGTGCAAGGACCGCCACGCCGACATGCGTGTCTCGGCAAAGAGAGGC
CAACAAGATCTTTATCGCGAAGACGTTTCTGGCTTTTCCAGCCACGTTAC
CCCCGATTCGGGTGCGAGTAACAGTCGTGGTCGCACTGGCATTTCCAGTG
ATGGCAACGATTCTCCGTTGCCGAGCAATAGTGCAGACGGAAATGGACAT
ACTACCAATTTTCTGGACGGCCTTCTCGCCTGGTTCAGTGGTGGATCTAC
ACCAGAACGAAACGGATCTAGTAATACTCAGTAG

Coding sequence (CDS) from alignment at tig00004403_pilon:104414..106147+

>Gchil1459.t1 ID=Gchil1459.t1|Name=Gchil1459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1734bp|location=Sequence derived from alignment at tig00004403_pilon:104414..106147+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACTCGCCACAGCCCCACCCCTCCGAAAGTCCCCTAACTCAAGGTTC
TAACCAATTCAACCAGCTACGCCCCAGCCGGCGACTTTCCGCCTCCGAGC
TCCAACCGCAGCCGATGCCCTCTCCGCTGCCCTCCCAATTCCCCTCGCCC
CTCACCCCACAAACAGACGCGCCCTCCGCACCTAAACCCCCCGCCGACGC
CACCGCCGCGCTCACCTTGCCTGCCCCGACCCGCCGGAAACATGATCGCC
ATATCAGCCCGTCCATCCCGGAGTCGCGCCCGACCAACCCCACCCTCGCC
TCCCTGTCAGACCGAATCGGCCGTCGTGACCCGTCTGGTCGCGCCCGAAG
AGCAAAGCGTCTGCGCGGCGCATCTCCCATCGCCTCTTCCTCCATCGCGT
CTCTCGCAGAGCTGGCCACCGCTTCACCCCCGCACCAGTCCTCTTCTGTC
ATAACCGCCGCCAATGCTCCCCGTTCGTTGCGTCGCCATCGCCGCCGCGC
TTCCGAGTCCGGCGTGCATATCAACTCGGCTAATATCACTGTGCCCACCG
AGAGGCGCCCACTGGCCCTCAATGACTTTTCGCTCAACAAGATGCTCGGG
TCGGGCGGGACCGCTACCGTGTTTCGCGCCGAGGTCTTACCTGCTTCCCC
GGCCGCTGCCTTCCTTCCAAGCAAGGAGTTGGCTCTCAAGGTCGTGTCGA
AGAAGGGACTCACTCGTCGCGCCCAGCACTATCTCACCAGGGAGATTGCC
ATTCACCGTAGCTTGCAACATCCAAACATTGCCTCGCTGTACGAGGTATT
TGAGGACACGGCCGGCATCTACCTGGCCATGGAACTTTTGAGGGGCAATG
ACTTGTACACGGCGCTCAAGAGAGAGCGACAGGGCTTTCCAGAGCCTCTT
GCTCTGCAAATTAGTGCTCAGCTGCTGGATGCCTTGAGTTATATGCATTC
GCTCGGCTACGCCCATCGCGACGTCAAGCCGGAGAACATCATGTTTACGG
AAAAGCCCTTCTACTCGGAAGGCAAACTTGCGTCAGTCAAGCTTATTGAC
TTTGGTTTGGCCAGTGCGCGCGACCCCAGCGCCTCGGACAAGGAGAAACT
TAGCTCGGAGAAGTGCGGCACCGTTCGCTATGCCGCCCCGGAAATCGTCA
CCGAGACAGCTTATGTTCCGGAGCTGTGCGATATTTGGAGCGTGGGCATT
GTGCTCTACTCCATGATCGCCCACAGAAACCCGTACACCGGACGTACGGA
GAGGGAGGTTTTGCAACAGATTGCAAACACCTCGCTTTCGTTCAATACTC
CCGAGTGGGGGAGAGTTTCCAACGACACAAAACTGTTTATTCGCTCCTGT
CTTTCGCTTCAGCCTTCCGATCGTCCCAACGCCACTCGCGCGCTGGAAGA
AGTGCACCGAATAAGTGCCTTGCTTGCCGAAAAGCGCGTGGACGACTCCT
TTGAGTGCAAGGACCGCCACGCCGACATGCGTGTCTCGGCAAAGAGAGGC
CAACAAGATCTTTATCGCGAAGACGTTTCTGGCTTTTCCAGCCACGTTAC
CCCCGATTCGGGTGCGAGTAACAGTCGTGGTCGCACTGGCATTTCCAGTG
ATGGCAACGATTCTCCGTTGCCGAGCAATAGTGCAGACGGAAATGGACAT
ACTACCAATTTTCTGGACGGCCTTCTCGCCTGGTTCAGTGGTGGATCTAC
ACCAGAACGAAACGGATCTAGTAATACTCAGTAG