Gchil1459.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1459.t1
Unique NameGchil1459.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length578
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:104414..106147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_91223
PFAMsPkinase
Max annot lvl2759|Eukaryota
Evalue3.08e-39
EggNOG OGsKOG0603@1|root,KOG0603@2759|Eukaryota
Descriptionprotein serine/threonine kinase activity
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1459Gchil1459Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 104414..106147 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1459.t1.start1Gchil1459.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 104414..104416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1459.t1.CDS1Gchil1459.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 104414..106147 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1459.t1.exon1Gchil1459.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 104414..106147 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1459.t1.stop1Gchil1459.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 106145..106147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1459.t1Gchil1459.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 104414..106147 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1459.t1 ID=Gchil1459.t1|Name=Gchil1459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=578bp
MHSPQPHPSESPLTQGSNQFNQLRPSRRLSASELQPQPMPSPLPSQFPSP
LTPQTDAPSAPKPPADATAALTLPAPTRRKHDRHISPSIPESRPTNPTLA
SLSDRIGRRDPSGRARRAKRLRGASPIASSSIASLAELATASPPHQSSSV
ITAANAPRSLRRHRRRASESGVHINSANITVPTERRPLALNDFSLNKMLG
SGGTATVFRAEVLPASPAAAFLPSKELALKVVSKKGLTRRAQHYLTREIA
IHRSLQHPNIASLYEVFEDTAGIYLAMELLRGNDLYTALKRERQGFPEPL
ALQISAQLLDALSYMHSLGYAHRDVKPENIMFTEKPFYSEGKLASVKLID
FGLASARDPSASDKEKLSSEKCGTVRYAAPEIVTETAYVPELCDIWSVGI
VLYSMIAHRNPYTGRTEREVLQQIANTSLSFNTPEWGRVSNDTKLFIRSC
LSLQPSDRPNATRALEEVHRISALLAEKRVDDSFECKDRHADMRVSAKRG
QQDLYREDVSGFSSHVTPDSGASNSRGRTGISSDGNDSPLPSNSADGNGH
TTNFLDGLLAWFSGGSTPERNGSSNTQ*
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spliced messenger RNA

>Gchil1459.t1 ID=Gchil1459.t1|Name=Gchil1459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00004403_pilon:104414..106147+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCGCCACAGCCCCACCCCTCCGAAAGTCCCCTAACTCAAGGTTC
TAACCAATTCAACCAGCTACGCCCCAGCCGGCGACTTTCCGCCTCCGAGC
TCCAACCGCAGCCGATGCCCTCTCCGCTGCCCTCCCAATTCCCCTCGCCC
CTCACCCCACAAACAGACGCGCCCTCCGCACCTAAACCCCCCGCCGACGC
CACCGCCGCGCTCACCTTGCCTGCCCCGACCCGCCGGAAACATGATCGCC
ATATCAGCCCGTCCATCCCGGAGTCGCGCCCGACCAACCCCACCCTCGCC
TCCCTGTCAGACCGAATCGGCCGTCGTGACCCGTCTGGTCGCGCCCGAAG
AGCAAAGCGTCTGCGCGGCGCATCTCCCATCGCCTCTTCCTCCATCGCGT
CTCTCGCAGAGCTGGCCACCGCTTCACCCCCGCACCAGTCCTCTTCTGTC
ATAACCGCCGCCAATGCTCCCCGTTCGTTGCGTCGCCATCGCCGCCGCGC
TTCCGAGTCCGGCGTGCATATCAACTCGGCTAATATCACTGTGCCCACCG
AGAGGCGCCCACTGGCCCTCAATGACTTTTCGCTCAACAAGATGCTCGGG
TCGGGCGGGACCGCTACCGTGTTTCGCGCCGAGGTCTTACCTGCTTCCCC
GGCCGCTGCCTTCCTTCCAAGCAAGGAGTTGGCTCTCAAGGTCGTGTCGA
AGAAGGGACTCACTCGTCGCGCCCAGCACTATCTCACCAGGGAGATTGCC
ATTCACCGTAGCTTGCAACATCCAAACATTGCCTCGCTGTACGAGGTATT
TGAGGACACGGCCGGCATCTACCTGGCCATGGAACTTTTGAGGGGCAATG
ACTTGTACACGGCGCTCAAGAGAGAGCGACAGGGCTTTCCAGAGCCTCTT
GCTCTGCAAATTAGTGCTCAGCTGCTGGATGCCTTGAGTTATATGCATTC
GCTCGGCTACGCCCATCGCGACGTCAAGCCGGAGAACATCATGTTTACGG
AAAAGCCCTTCTACTCGGAAGGCAAACTTGCGTCAGTCAAGCTTATTGAC
TTTGGTTTGGCCAGTGCGCGCGACCCCAGCGCCTCGGACAAGGAGAAACT
TAGCTCGGAGAAGTGCGGCACCGTTCGCTATGCCGCCCCGGAAATCGTCA
CCGAGACAGCTTATGTTCCGGAGCTGTGCGATATTTGGAGCGTGGGCATT
GTGCTCTACTCCATGATCGCCCACAGAAACCCGTACACCGGACGTACGGA
GAGGGAGGTTTTGCAACAGATTGCAAACACCTCGCTTTCGTTCAATACTC
CCGAGTGGGGGAGAGTTTCCAACGACACAAAACTGTTTATTCGCTCCTGT
CTTTCGCTTCAGCCTTCCGATCGTCCCAACGCCACTCGCGCGCTGGAAGA
AGTGCACCGAATAAGTGCCTTGCTTGCCGAAAAGCGCGTGGACGACTCCT
TTGAGTGCAAGGACCGCCACGCCGACATGCGTGTCTCGGCAAAGAGAGGC
CAACAAGATCTTTATCGCGAAGACGTTTCTGGCTTTTCCAGCCACGTTAC
CCCCGATTCGGGTGCGAGTAACAGTCGTGGTCGCACTGGCATTTCCAGTG
ATGGCAACGATTCTCCGTTGCCGAGCAATAGTGCAGACGGAAATGGACAT
ACTACCAATTTTCTGGACGGCCTTCTCGCCTGGTTCAGTGGTGGATCTAC
ACCAGAACGAAACGGATCTAGTAATACTCAGTAG
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protein sequence of Gchil1459.t1

>Gchil1459.t1 ID=Gchil1459.t1|Name=Gchil1459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=578bp
MHSPQPHPSESPLTQGSNQFNQLRPSRRLSASELQPQPMPSPLPSQFPSP
LTPQTDAPSAPKPPADATAALTLPAPTRRKHDRHISPSIPESRPTNPTLA
SLSDRIGRRDPSGRARRAKRLRGASPIASSSIASLAELATASPPHQSSSV
ITAANAPRSLRRHRRRASESGVHINSANITVPTERRPLALNDFSLNKMLG
SGGTATVFRAEVLPASPAAAFLPSKELALKVVSKKGLTRRAQHYLTREIA
IHRSLQHPNIASLYEVFEDTAGIYLAMELLRGNDLYTALKRERQGFPEPL
ALQISAQLLDALSYMHSLGYAHRDVKPENIMFTEKPFYSEGKLASVKLID
FGLASARDPSASDKEKLSSEKCGTVRYAAPEIVTETAYVPELCDIWSVGI
VLYSMIAHRNPYTGRTEREVLQQIANTSLSFNTPEWGRVSNDTKLFIRSC
LSLQPSDRPNATRALEEVHRISALLAEKRVDDSFECKDRHADMRVSAKRG
QQDLYREDVSGFSSHVTPDSGASNSRGRTGISSDGNDSPLPSNSADGNGH
TTNFLDGLLAWFSGGSTPERNGSSNTQ*
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mRNA from alignment at tig00004403_pilon:104414..106147+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1459.t1 ID=Gchil1459.t1|Name=Gchil1459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at tig00004403_pilon:104414..106147+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACTCGCCACAGCCCCACCCCTCCGAAAGTCCCCTAACTCAAGGTTC
TAACCAATTCAACCAGCTACGCCCCAGCCGGCGACTTTCCGCCTCCGAGC
TCCAACCGCAGCCGATGCCCTCTCCGCTGCCCTCCCAATTCCCCTCGCCC
CTCACCCCACAAACAGACGCGCCCTCCGCACCTAAACCCCCCGCCGACGC
CACCGCCGCGCTCACCTTGCCTGCCCCGACCCGCCGGAAACATGATCGCC
ATATCAGCCCGTCCATCCCGGAGTCGCGCCCGACCAACCCCACCCTCGCC
TCCCTGTCAGACCGAATCGGCCGTCGTGACCCGTCTGGTCGCGCCCGAAG
AGCAAAGCGTCTGCGCGGCGCATCTCCCATCGCCTCTTCCTCCATCGCGT
CTCTCGCAGAGCTGGCCACCGCTTCACCCCCGCACCAGTCCTCTTCTGTC
ATAACCGCCGCCAATGCTCCCCGTTCGTTGCGTCGCCATCGCCGCCGCGC
TTCCGAGTCCGGCGTGCATATCAACTCGGCTAATATCACTGTGCCCACCG
AGAGGCGCCCACTGGCCCTCAATGACTTTTCGCTCAACAAGATGCTCGGG
TCGGGCGGGACCGCTACCGTGTTTCGCGCCGAGGTCTTACCTGCTTCCCC
GGCCGCTGCCTTCCTTCCAAGCAAGGAGTTGGCTCTCAAGGTCGTGTCGA
AGAAGGGACTCACTCGTCGCGCCCAGCACTATCTCACCAGGGAGATTGCC
ATTCACCGTAGCTTGCAACATCCAAACATTGCCTCGCTGTACGAGGTATT
TGAGGACACGGCCGGCATCTACCTGGCCATGGAACTTTTGAGGGGCAATG
ACTTGTACACGGCGCTCAAGAGAGAGCGACAGGGCTTTCCAGAGCCTCTT
GCTCTGCAAATTAGTGCTCAGCTGCTGGATGCCTTGAGTTATATGCATTC
GCTCGGCTACGCCCATCGCGACGTCAAGCCGGAGAACATCATGTTTACGG
AAAAGCCCTTCTACTCGGAAGGCAAACTTGCGTCAGTCAAGCTTATTGAC
TTTGGTTTGGCCAGTGCGCGCGACCCCAGCGCCTCGGACAAGGAGAAACT
TAGCTCGGAGAAGTGCGGCACCGTTCGCTATGCCGCCCCGGAAATCGTCA
CCGAGACAGCTTATGTTCCGGAGCTGTGCGATATTTGGAGCGTGGGCATT
GTGCTCTACTCCATGATCGCCCACAGAAACCCGTACACCGGACGTACGGA
GAGGGAGGTTTTGCAACAGATTGCAAACACCTCGCTTTCGTTCAATACTC
CCGAGTGGGGGAGAGTTTCCAACGACACAAAACTGTTTATTCGCTCCTGT
CTTTCGCTTCAGCCTTCCGATCGTCCCAACGCCACTCGCGCGCTGGAAGA
AGTGCACCGAATAAGTGCCTTGCTTGCCGAAAAGCGCGTGGACGACTCCT
TTGAGTGCAAGGACCGCCACGCCGACATGCGTGTCTCGGCAAAGAGAGGC
CAACAAGATCTTTATCGCGAAGACGTTTCTGGCTTTTCCAGCCACGTTAC
CCCCGATTCGGGTGCGAGTAACAGTCGTGGTCGCACTGGCATTTCCAGTG
ATGGCAACGATTCTCCGTTGCCGAGCAATAGTGCAGACGGAAATGGACAT
ACTACCAATTTTCTGGACGGCCTTCTCGCCTGGTTCAGTGGTGGATCTAC
ACCAGAACGAAACGGATCTAGTAATACTCAGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:104414..106147+

>Gchil1459.t1 ID=Gchil1459.t1|Name=Gchil1459.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1734bp|location=Sequence derived from alignment at tig00004403_pilon:104414..106147+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACTCGCCACAGCCCCACCCCTCCGAAAGTCCCCTAACTCAAGGTTC
TAACCAATTCAACCAGCTACGCCCCAGCCGGCGACTTTCCGCCTCCGAGC
TCCAACCGCAGCCGATGCCCTCTCCGCTGCCCTCCCAATTCCCCTCGCCC
CTCACCCCACAAACAGACGCGCCCTCCGCACCTAAACCCCCCGCCGACGC
CACCGCCGCGCTCACCTTGCCTGCCCCGACCCGCCGGAAACATGATCGCC
ATATCAGCCCGTCCATCCCGGAGTCGCGCCCGACCAACCCCACCCTCGCC
TCCCTGTCAGACCGAATCGGCCGTCGTGACCCGTCTGGTCGCGCCCGAAG
AGCAAAGCGTCTGCGCGGCGCATCTCCCATCGCCTCTTCCTCCATCGCGT
CTCTCGCAGAGCTGGCCACCGCTTCACCCCCGCACCAGTCCTCTTCTGTC
ATAACCGCCGCCAATGCTCCCCGTTCGTTGCGTCGCCATCGCCGCCGCGC
TTCCGAGTCCGGCGTGCATATCAACTCGGCTAATATCACTGTGCCCACCG
AGAGGCGCCCACTGGCCCTCAATGACTTTTCGCTCAACAAGATGCTCGGG
TCGGGCGGGACCGCTACCGTGTTTCGCGCCGAGGTCTTACCTGCTTCCCC
GGCCGCTGCCTTCCTTCCAAGCAAGGAGTTGGCTCTCAAGGTCGTGTCGA
AGAAGGGACTCACTCGTCGCGCCCAGCACTATCTCACCAGGGAGATTGCC
ATTCACCGTAGCTTGCAACATCCAAACATTGCCTCGCTGTACGAGGTATT
TGAGGACACGGCCGGCATCTACCTGGCCATGGAACTTTTGAGGGGCAATG
ACTTGTACACGGCGCTCAAGAGAGAGCGACAGGGCTTTCCAGAGCCTCTT
GCTCTGCAAATTAGTGCTCAGCTGCTGGATGCCTTGAGTTATATGCATTC
GCTCGGCTACGCCCATCGCGACGTCAAGCCGGAGAACATCATGTTTACGG
AAAAGCCCTTCTACTCGGAAGGCAAACTTGCGTCAGTCAAGCTTATTGAC
TTTGGTTTGGCCAGTGCGCGCGACCCCAGCGCCTCGGACAAGGAGAAACT
TAGCTCGGAGAAGTGCGGCACCGTTCGCTATGCCGCCCCGGAAATCGTCA
CCGAGACAGCTTATGTTCCGGAGCTGTGCGATATTTGGAGCGTGGGCATT
GTGCTCTACTCCATGATCGCCCACAGAAACCCGTACACCGGACGTACGGA
GAGGGAGGTTTTGCAACAGATTGCAAACACCTCGCTTTCGTTCAATACTC
CCGAGTGGGGGAGAGTTTCCAACGACACAAAACTGTTTATTCGCTCCTGT
CTTTCGCTTCAGCCTTCCGATCGTCCCAACGCCACTCGCGCGCTGGAAGA
AGTGCACCGAATAAGTGCCTTGCTTGCCGAAAAGCGCGTGGACGACTCCT
TTGAGTGCAAGGACCGCCACGCCGACATGCGTGTCTCGGCAAAGAGAGGC
CAACAAGATCTTTATCGCGAAGACGTTTCTGGCTTTTCCAGCCACGTTAC
CCCCGATTCGGGTGCGAGTAACAGTCGTGGTCGCACTGGCATTTCCAGTG
ATGGCAACGATTCTCCGTTGCCGAGCAATAGTGCAGACGGAAATGGACAT
ACTACCAATTTTCTGGACGGCCTTCTCGCCTGGTTCAGTGGTGGATCTAC
ACCAGAACGAAACGGATCTAGTAATACTCAGTAG
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