Gchil1414.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1414.t1
Unique NameGchil1414.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:801862..802656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009035705.1
PFAMsDAGK_cat
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K04718
KEGG ReactionR01926,R02976
KEGG Pathwayko00600,ko01100,ko04020,ko04071,ko04072,ko04370,ko04371,ko04666,ko05152,map00600,map01100,map04020,map04071,map04072,map04370,map04371,map04666,map05152
KEGG ModuleM00100
Evalue6.17e-13
EggNOG OGsCOG1597@1|root,KOG1116@2759|Eukaryota
EC2.7.1.91
DescriptionD-erythro-sphingosine kinase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1414Gchil1414Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 801862..802656 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1414.t1.start1Gchil1414.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 801862..801864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1414.t1.CDS1Gchil1414.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 801862..802656 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1414.t1.exon1Gchil1414.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 801862..802656 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1414.t1.stop1Gchil1414.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 802654..802656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1414.t1Gchil1414.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 801862..802656 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1414.t1 ID=Gchil1414.t1|Name=Gchil1414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=265bp
MVQTERPRRRDADDHETSVSSVAPPVTPHLVSGVEDGQLVYYRAPRCHLC
RPSDPRHLQSYLSRALATATVAEPPVPALAPHILLIVNPRASTCSALALS
PLLRTVTSVLVKGCVQATLRQTSHRGHVRNILAQLGAPALQRFAALVAVG
GDGTLQELVVALLHICATAALSLPWSSVQPVAVVPNGTGNSIAESMGISS
PVHSALNAVHSLRQLNAAPLALLQFSCMRDHRPPLLSFCGVQWGFSAEVD
QRTESLRWLGEIES*
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spliced messenger RNA

>Gchil1414.t1 ID=Gchil1414.t1|Name=Gchil1414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00004414_pilon:801862..802656+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCAAACGGAGCGCCCTCGCCGCCGCGATGCAGACGACCATGAAAC
ATCCGTCTCCTCCGTCGCGCCGCCAGTGACGCCGCACTTGGTCTCCGGCG
TGGAGGACGGCCAGTTGGTGTACTACCGCGCGCCGCGCTGCCACCTCTGT
CGCCCGTCCGACCCGCGTCACCTGCAGAGCTATCTCTCCCGAGCGCTGGC
AACCGCCACCGTCGCCGAGCCGCCTGTTCCCGCGCTCGCGCCGCATATAC
TACTCATCGTCAACCCGCGCGCCAGCACCTGCTCCGCGTTGGCGCTGTCG
CCACTGTTGCGCACGGTGACGAGCGTGTTAGTAAAGGGCTGTGTACAAGC
GACGTTACGTCAAACAAGCCATCGCGGCCACGTGCGCAACATTCTCGCCC
AACTCGGCGCGCCTGCGCTGCAGCGCTTCGCCGCACTTGTCGCAGTAGGT
GGCGATGGCACGCTACAGGAGCTCGTGGTCGCGCTGCTGCACATTTGTGC
TACTGCGGCGCTGTCGTTGCCGTGGTCCTCTGTGCAGCCCGTCGCCGTCG
TGCCTAACGGTACGGGAAATTCCATCGCGGAGAGCATGGGAATCTCGTCG
CCCGTTCATTCTGCGCTGAATGCGGTGCACTCGCTGCGGCAGCTTAATGC
AGCCCCGCTCGCGCTCTTGCAGTTCAGTTGCATGCGTGACCACCGCCCGC
CGCTGCTTAGTTTTTGCGGCGTGCAGTGGGGCTTTTCCGCCGAGGTGGAC
CAGCGCACCGAGTCTCTCCGCTGGCTGGGTgagattgagtcttaa
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protein sequence of Gchil1414.t1

>Gchil1414.t1 ID=Gchil1414.t1|Name=Gchil1414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=265bp
MVQTERPRRRDADDHETSVSSVAPPVTPHLVSGVEDGQLVYYRAPRCHLC
RPSDPRHLQSYLSRALATATVAEPPVPALAPHILLIVNPRASTCSALALS
PLLRTVTSVLVKGCVQATLRQTSHRGHVRNILAQLGAPALQRFAALVAVG
GDGTLQELVVALLHICATAALSLPWSSVQPVAVVPNGTGNSIAESMGISS
PVHSALNAVHSLRQLNAAPLALLQFSCMRDHRPPLLSFCGVQWGFSAEVD
QRTESLRWLGEIES*
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mRNA from alignment at tig00004414_pilon:801862..802656+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1414.t1 ID=Gchil1414.t1|Name=Gchil1414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00004414_pilon:801862..802656+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCAAACGGAGCGCCCTCGCCGCCGCGATGCAGACGACCATGAAAC
ATCCGTCTCCTCCGTCGCGCCGCCAGTGACGCCGCACTTGGTCTCCGGCG
TGGAGGACGGCCAGTTGGTGTACTACCGCGCGCCGCGCTGCCACCTCTGT
CGCCCGTCCGACCCGCGTCACCTGCAGAGCTATCTCTCCCGAGCGCTGGC
AACCGCCACCGTCGCCGAGCCGCCTGTTCCCGCGCTCGCGCCGCATATAC
TACTCATCGTCAACCCGCGCGCCAGCACCTGCTCCGCGTTGGCGCTGTCG
CCACTGTTGCGCACGGTGACGAGCGTGTTAGTAAAGGGCTGTGTACAAGC
GACGTTACGTCAAACAAGCCATCGCGGCCACGTGCGCAACATTCTCGCCC
AACTCGGCGCGCCTGCGCTGCAGCGCTTCGCCGCACTTGTCGCAGTAGGT
GGCGATGGCACGCTACAGGAGCTCGTGGTCGCGCTGCTGCACATTTGTGC
TACTGCGGCGCTGTCGTTGCCGTGGTCCTCTGTGCAGCCCGTCGCCGTCG
TGCCTAACGGTACGGGAAATTCCATCGCGGAGAGCATGGGAATCTCGTCG
CCCGTTCATTCTGCGCTGAATGCGGTGCACTCGCTGCGGCAGCTTAATGC
AGCCCCGCTCGCGCTCTTGCAGTTCAGTTGCATGCGTGACCACCGCCCGC
CGCTGCTTAGTTTTTGCGGCGTGCAGTGGGGCTTTTCCGCCGAGGTGGAC
CAGCGCACCGAGTCTCTCCGCTGGCTGGGTgagattgagtcttaa
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Coding sequence (CDS) from alignment at tig00004414_pilon:801862..802656+

>Gchil1414.t1 ID=Gchil1414.t1|Name=Gchil1414.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00004414_pilon:801862..802656+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCAAACGGAGCGCCCTCGCCGCCGCGATGCAGACGACCATGAAAC
ATCCGTCTCCTCCGTCGCGCCGCCAGTGACGCCGCACTTGGTCTCCGGCG
TGGAGGACGGCCAGTTGGTGTACTACCGCGCGCCGCGCTGCCACCTCTGT
CGCCCGTCCGACCCGCGTCACCTGCAGAGCTATCTCTCCCGAGCGCTGGC
AACCGCCACCGTCGCCGAGCCGCCTGTTCCCGCGCTCGCGCCGCATATAC
TACTCATCGTCAACCCGCGCGCCAGCACCTGCTCCGCGTTGGCGCTGTCG
CCACTGTTGCGCACGGTGACGAGCGTGTTAGTAAAGGGCTGTGTACAAGC
GACGTTACGTCAAACAAGCCATCGCGGCCACGTGCGCAACATTCTCGCCC
AACTCGGCGCGCCTGCGCTGCAGCGCTTCGCCGCACTTGTCGCAGTAGGT
GGCGATGGCACGCTACAGGAGCTCGTGGTCGCGCTGCTGCACATTTGTGC
TACTGCGGCGCTGTCGTTGCCGTGGTCCTCTGTGCAGCCCGTCGCCGTCG
TGCCTAACGGTACGGGAAATTCCATCGCGGAGAGCATGGGAATCTCGTCG
CCCGTTCATTCTGCGCTGAATGCGGTGCACTCGCTGCGGCAGCTTAATGC
AGCCCCGCTCGCGCTCTTGCAGTTCAGTTGCATGCGTGACCACCGCCCGC
CGCTGCTTAGTTTTTGCGGCGTGCAGTGGGGCTTTTCCGCCGAGGTGGAC
CAGCGCACCGAGTCTCTCCGCTGGCTGGGTgagattgagtcttaa
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