Gchil1409.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1409.t1
Unique NameGchil1409.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:721909..722280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13684.SNOT_07810
Preferred nameutp7
PFAMsBING4CT,WD40
Max annot lvl4751|Fungi
KEGG koko:K14768
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue1.1e-08
EggNOG OGsKOG1272@1|root,KOG1272@2759|Eukaryota,38EQ1@33154|Opisthokonta,3NU5B@4751|Fungi,3QJTU@4890|Ascomycota,200V0@147541|Dothideomycetes,4KDI1@92860|Pleosporales
DescriptionBING4CT (NUC141) domain
COG categoryA
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1409Gchil1409Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 721909..722280 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1409.t1.stop1Gchil1409.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 721909..721911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1409.t1.CDS1Gchil1409.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 721909..722280 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1409.t1.exon1Gchil1409.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 721909..722280 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1409.t1.start1Gchil1409.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 722278..722280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1409.t1Gchil1409.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 721909..722280 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1409.t1 ID=Gchil1409.t1|Name=Gchil1409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=124bp
MGRRPRPRQQIPLADVKPTARKRVSRANQAAHLSYVVLREVIDATILQTD
APGVLQPQNDLEHTYHFMQQALRPHVNIATAANADFQLRLDDSGLAPYHT
ACFSRYSRSLWIASRLGPVSMLD*
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spliced messenger RNA

>Gchil1409.t1 ID=Gchil1409.t1|Name=Gchil1409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00004414_pilon:721909..722280- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGTCGCCCGCGCCCGCGCCAACAGATCCCCCTCGCCGATGTGAA
GCCAACCGCGCGCAAGCGCGTCTCCCGCGCCAACCAGGCCGCCCATTTGT
CGTACGTCGTGCTCAGGGAAGTCATTGATGCCACCATCTTGCAAACCGAC
GCACCCGGTGTGCTTCAGCCGCAAAACGACCTCGAGCACACCTACCATTT
CATGCAGCAAGCGCTGCGACCACACGTTAACATTGCTACTGCGGCCAACG
CCGACTTCCAACTCAGACTGGACGACTCCGGTTTGGCCCCCTATCACACC
GCATGTTTTTCGCGCTATTCTCGCTCTTTGTGGATTGCCAGTAGACTTGG
TCCTGTTTCAATGCTCGATTGA
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protein sequence of Gchil1409.t1

>Gchil1409.t1 ID=Gchil1409.t1|Name=Gchil1409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=124bp
MGRRPRPRQQIPLADVKPTARKRVSRANQAAHLSYVVLREVIDATILQTD
APGVLQPQNDLEHTYHFMQQALRPHVNIATAANADFQLRLDDSGLAPYHT
ACFSRYSRSLWIASRLGPVSMLD*
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mRNA from alignment at tig00004414_pilon:721909..722280-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1409.t1 ID=Gchil1409.t1|Name=Gchil1409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00004414_pilon:721909..722280- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCCGTCGCCCGCGCCCGCGCCAACAGATCCCCCTCGCCGATGTGAA
GCCAACCGCGCGCAAGCGCGTCTCCCGCGCCAACCAGGCCGCCCATTTGT
CGTACGTCGTGCTCAGGGAAGTCATTGATGCCACCATCTTGCAAACCGAC
GCACCCGGTGTGCTTCAGCCGCAAAACGACCTCGAGCACACCTACCATTT
CATGCAGCAAGCGCTGCGACCACACGTTAACATTGCTACTGCGGCCAACG
CCGACTTCCAACTCAGACTGGACGACTCCGGTTTGGCCCCCTATCACACC
GCATGTTTTTCGCGCTATTCTCGCTCTTTGTGGATTGCCAGTAGACTTGG
TCCTGTTTCAATGCTCGATTGA
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Coding sequence (CDS) from alignment at tig00004414_pilon:721909..722280-

>Gchil1409.t1 ID=Gchil1409.t1|Name=Gchil1409.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=372bp|location=Sequence derived from alignment at tig00004414_pilon:721909..722280- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCCGTCGCCCGCGCCCGCGCCAACAGATCCCCCTCGCCGATGTGAA
GCCAACCGCGCGCAAGCGCGTCTCCCGCGCCAACCAGGCCGCCCATTTGT
CGTACGTCGTGCTCAGGGAAGTCATTGATGCCACCATCTTGCAAACCGAC
GCACCCGGTGTGCTTCAGCCGCAAAACGACCTCGAGCACACCTACCATTT
CATGCAGCAAGCGCTGCGACCACACGTTAACATTGCTACTGCGGCCAACG
CCGACTTCCAACTCAGACTGGACGACTCCGGTTTGGCCCCCTATCACACC
GCATGTTTTTCGCGCTATTCTCGCTCTTTGTGGATTGCCAGTAGACTTGG
TCCTGTTTCAATGCTCGATTGA
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