Gchil1374.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1374.t1
Unique NameGchil1374.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:52367..52804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1374Gchil1374Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 52367..52804 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1374.t1.stop1Gchil1374.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 52367..52369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1374.t1.CDS1Gchil1374.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 52367..52804 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1374.t1.exon1Gchil1374.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 52367..52804 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1374.t1.start1Gchil1374.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 52802..52804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1374.t1Gchil1374.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 52367..52804 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1374.t1 ID=Gchil1374.t1|Name=Gchil1374.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=146bp
MPLRSPPQARVVTMAGVPIDFNPSYAPLAIQLSDINCTELSYIGTRPSIP
QNETEQDEVEYSKQLQIIWKAIRHLSIQFILTTISDGEGVHCEDEQNPVI
RLRHINTFAQTISCDIQRSSLCNEFDSEEMFELIAHERYFEENLK*
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spliced messenger RNA

>Gchil1374.t1 ID=Gchil1374.t1|Name=Gchil1374.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00004414_pilon:52367..52804- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTAAGATCTCCCCCACAGGCTCGCGTGGTGACTATGGCTGGCGT
CCCGATTGATTTTAATCCAAGCTATGCACCTTTGGCCATCCAGCTTTCTG
ACATCAACTGTACCGAGTTGTCTTACATTGGAACAAGGCCTTCTATACCA
CAAAATGAAACTGAACAAGATGAAGTCGAGTACTCAAAACAACTGCAAAT
TATATGGAAAGCAATACGTCATCTATCTATTCAGTTCATTTTGACCACTA
TATCTGATGGAGAGGGCGTTCATTGCGAAGATGAACAAAATCCAGTGATT
CGTTTACGGCACATAAACACTTTTGCGCAGACCATTTCTTGTGACATCCA
ACGCTCCAGTCTCTGTAACGAATTCGATTCCGAAGAAATGTTTGAATTAA
TTGCTCATGAACGTTATTTTGAGGAGAATCTAAAATAG
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protein sequence of Gchil1374.t1

>Gchil1374.t1 ID=Gchil1374.t1|Name=Gchil1374.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=146bp
MPLRSPPQARVVTMAGVPIDFNPSYAPLAIQLSDINCTELSYIGTRPSIP
QNETEQDEVEYSKQLQIIWKAIRHLSIQFILTTISDGEGVHCEDEQNPVI
RLRHINTFAQTISCDIQRSSLCNEFDSEEMFELIAHERYFEENLK*
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mRNA from alignment at tig00004414_pilon:52367..52804-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1374.t1 ID=Gchil1374.t1|Name=Gchil1374.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00004414_pilon:52367..52804- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCTAAGATCTCCCCCACAGGCTCGCGTGGTGACTATGGCTGGCGT
CCCGATTGATTTTAATCCAAGCTATGCACCTTTGGCCATCCAGCTTTCTG
ACATCAACTGTACCGAGTTGTCTTACATTGGAACAAGGCCTTCTATACCA
CAAAATGAAACTGAACAAGATGAAGTCGAGTACTCAAAACAACTGCAAAT
TATATGGAAAGCAATACGTCATCTATCTATTCAGTTCATTTTGACCACTA
TATCTGATGGAGAGGGCGTTCATTGCGAAGATGAACAAAATCCAGTGATT
CGTTTACGGCACATAAACACTTTTGCGCAGACCATTTCTTGTGACATCCA
ACGCTCCAGTCTCTGTAACGAATTCGATTCCGAAGAAATGTTTGAATTAA
TTGCTCATGAACGTTATTTTGAGGAGAATCTAAAATAG
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Coding sequence (CDS) from alignment at tig00004414_pilon:52367..52804-

>Gchil1374.t1 ID=Gchil1374.t1|Name=Gchil1374.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=438bp|location=Sequence derived from alignment at tig00004414_pilon:52367..52804- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCTAAGATCTCCCCCACAGGCTCGCGTGGTGACTATGGCTGGCGT
CCCGATTGATTTTAATCCAAGCTATGCACCTTTGGCCATCCAGCTTTCTG
ACATCAACTGTACCGAGTTGTCTTACATTGGAACAAGGCCTTCTATACCA
CAAAATGAAACTGAACAAGATGAAGTCGAGTACTCAAAACAACTGCAAAT
TATATGGAAAGCAATACGTCATCTATCTATTCAGTTCATTTTGACCACTA
TATCTGATGGAGAGGGCGTTCATTGCGAAGATGAACAAAATCCAGTGATT
CGTTTACGGCACATAAACACTTTTGCGCAGACCATTTCTTGTGACATCCA
ACGCTCCAGTCTCTGTAACGAATTCGATTCCGAAGAAATGTTTGAATTAA
TTGCTCATGAACGTTATTTTGAGGAGAATCTAAAATAG
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