Gchil1356.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1356.t1
Unique Name	Gchil1356.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	703

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004433_pilon	contig	tig00004433_pilon:904144..906324 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1356	Gchil1356	Gracilaria chilensis NLEC103_M9 male	gene	tig00004433_pilon 904144..906324 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1356.t1	Gchil1356.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004433_pilon 904144..906324 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1356.t1.start1	Gchil1356.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004433_pilon 904144..904146 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1356.t1.CDS1	Gchil1356.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004433_pilon 904144..904972 +
Gchil1356.t1.CDS2	Gchil1356.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004433_pilon 905045..906324 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1356.t1.exon1	Gchil1356.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004433_pilon 904144..904972 +
Gchil1356.t1.exon2	Gchil1356.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004433_pilon 905045..906324 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1356.t1.intron1	Gchil1356.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004433_pilon 904973..905044 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1356.t1.stop1	Gchil1356.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004433_pilon 906322..906324 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004433_pilon:904144..906324+
coding sequence from alignment at tig00004433_pilon:904144..906324+

mRNA sequence

>Gchil1356.t1 ID=Gchil1356.t1|Name=Gchil1356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=703bp
MSSKDRPRTRSQTGAPEPSQPSRIPVHSRSHTGGSTGVPRGKASRPSVSD
STPPASGAGPASAAAQILSPARDVTLHPIFAAVEEQLRCMREAQVILAEQ
FDSIPKKVNGTATQDFSEDLCVLRADMNSILESLGGPSAFVKDVAEKFSR
VRSRLETLEQSLMSGNNPTEPVAVSYKGRKEENRQARKKQRNTDPEPSDS
SSSESDSSDSSVEVARCERSSRSKRSTATHGVICARTKERKHIGLKELKP
TNSLFKILLSYRYYRLEDSSLDSTPRDPILVLHFLARFVAEADILGMNEG
QAYIALPYLLRGLAEDQYHSVRGTSRASEGGVTCWPEAVQYLLSSNATNP
AIQQAIRGLRDTRQRPDESGTDYSTLLNKAFHRFGNVYPAEERCTMFIDG
LDPAIRIIAARRREDRPKATYLELEEFVGAEGEALRARTPGSRVRSSKAL
MLQPGTPSALIIEEQASRRDYDNVQLAHIDLHSIPTTKLPSTLDESQYVI
EDDTLLYADNGRVRAPRVPHESGNVRFSRAGWRDTRPVVMFAEPRHPTPA
SGLICHLCYKTGHTSPQCVLSLREWAQVVINYEALSQENKAVVPNASYIR
SQKDVPHHVLHPRALVVPAPESRVTDVVSHPTASAEPSGPDALALPAQRP
EQPPPAEQAQKNLMWESPLKEGRPQSRGRWRPRRPSLTLRSKPFQGKRPS
MT*

spliced messenger RNA

>Gchil1356.t1 ID=Gchil1356.t1|Name=Gchil1356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2109bp|location=Sequence derived from alignment at tig00004433_pilon:904144..906324+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtcgtccaaagaccgtccgaggacgcggagtcaaaccggtgcaccgga
accctcgcaaccatcccgaatcccggtccattcacggtctcataccggtg
gatcgactggcgtgccacgtggaaaagcctcgagaccttcggtctctgat
tcgacacccccagcaagtggagcaggaccggcttctgccgccgcccagat
tctctcccctgctagggatgtcactctccatcctatctttgcagctgtgg
aagagcaactccgctgtatgcgggaagctcaagtcatccttgcagagcag
ttcgattccattcccaagaaggtaaatggcactgctacgcaggatttttc
tgaggacctctgtgtcctccgtgctgatatgaactcgattctagagtccc
ttggtggaccctcggcctttgtcaaggacgtcgcggagaagttctcgcgc
gtccgaagccgtctcgagacgttggaacaatccctaatgtcggggaataa
tccgaccgagcccgttgcagtatcctacaagggaagaaaggaagagaacc
gccaggctcgaaagaagcaaaggaacacggatcccgaaccgtcagactcc
tcatcctcggagtccgactcttccgattcatcggtagaagtagctcgctg
tgagcgttcctcacgctctaagcggtcaacagccacccatggtgtgatct
gcgcccgcacgaaggaaaggaagcacataggtttgaaggagctgaaaccg
accaattcactctttaagattctcttatcataccggtactaccgtttgga
ggactcctctttggatagtacaccccgtgacccaatattggtgttgcatt
tcttggcacgctttgtcgcggaagctgacatccttggaatgaacgaggga
caggcctacattgccttaccgtacttgttacgtgggcttgcagaagacca
gtatcactctgtgagaggtacatcacgcgcgtccgaaggaggggtaacct
gctggcccgaagcagttcagtacctcctaagttcaaatgctactaacccc
gccattcagcaggctatacgcggcctgcgggacactcgccaacggccaga
cgagtcgggaactgattattctacgctcctgaacaaggcattccaccgct
ttggcaatgtttaccccgctgaagagcgttgtaccatgtttatcgatggt
ttggacccggcgatccggattattgctgctcgacgtcgagaagatagacc
taaagccacgtatttggaactagaggagttcgtcggcgcagaaggtgaag
ccttgcgcgcacgcactcctggatccagggttaggtcctcaaaagcgttg
atgttacaaccgggtaccccgtcagctttgataatcgaggaacaggcctc
tcgaagggattatgataacgtgcagctagcccatatcgacctccattcca
tcccgacaacgaagttaccctcaaccttggacgaatcacaatatgtgatt
gaggatgacacgctactctatgcggataatggtcgcgttcgtgcgccgcg
cgtcccacacgagagtggtaatgtccgcttttcgcgtgctggttggagag
atacccgccccgtggtgatgttcgccgagcctcgccacccaactccggct
tctggtctgatttgtcacctttgctacaaaacaggccatacttctccaca
atgtgtgttgtctctccgagaatgggcacaagtcgtaatcaattacgagg
ccctatcccaggagaacaaagcagttgttccgaatgcatcgtatatccgt
tctcaaaaggatgttccacatcacgtgttgcatccccgagctctggtcgt
acctgcaccggaatcccgtgtcaccgacgttgtcagtcaccccaccgctt
ctgcggaaccttctggacctgatgccctggcgttgcctgctcaacgtcct
gagcagccgcctccggcggagcaggcccagaaaaacttaatgtgggagtc
tcctctcaaggaagggcgccctcagagtcgaggtcgatggcgcccgaggc
gtccaagcctcactctccggtcaaaaccctttcaaggaaagaggccgtca
atgacgtga

protein sequence of Gchil1356.t1

>Gchil1356.t1 ID=Gchil1356.t1|Name=Gchil1356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=703bp
MSSKDRPRTRSQTGAPEPSQPSRIPVHSRSHTGGSTGVPRGKASRPSVSD
STPPASGAGPASAAAQILSPARDVTLHPIFAAVEEQLRCMREAQVILAEQ
FDSIPKKVNGTATQDFSEDLCVLRADMNSILESLGGPSAFVKDVAEKFSR
VRSRLETLEQSLMSGNNPTEPVAVSYKGRKEENRQARKKQRNTDPEPSDS
SSSESDSSDSSVEVARCERSSRSKRSTATHGVICARTKERKHIGLKELKP
TNSLFKILLSYRYYRLEDSSLDSTPRDPILVLHFLARFVAEADILGMNEG
QAYIALPYLLRGLAEDQYHSVRGTSRASEGGVTCWPEAVQYLLSSNATNP
AIQQAIRGLRDTRQRPDESGTDYSTLLNKAFHRFGNVYPAEERCTMFIDG
LDPAIRIIAARRREDRPKATYLELEEFVGAEGEALRARTPGSRVRSSKAL
MLQPGTPSALIIEEQASRRDYDNVQLAHIDLHSIPTTKLPSTLDESQYVI
EDDTLLYADNGRVRAPRVPHESGNVRFSRAGWRDTRPVVMFAEPRHPTPA
SGLICHLCYKTGHTSPQCVLSLREWAQVVINYEALSQENKAVVPNASYIR
SQKDVPHHVLHPRALVVPAPESRVTDVVSHPTASAEPSGPDALALPAQRP
EQPPPAEQAQKNLMWESPLKEGRPQSRGRWRPRRPSLTLRSKPFQGKRPS
MT*

mRNA from alignment at tig00004433_pilon:904144..906324+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1356.t1 ID=Gchil1356.t1|Name=Gchil1356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2181bp|location=Sequence derived from alignment at tig00004433_pilon:904144..906324+ (Gracilaria chilensis NLEC103_M9 male)
atgtcgtccaaagaccgtccgaggacgcggagtcaaaccggtgcaccgga
accctcgcaaccatcccgaatcccggtccattcacggtctcataccggtg
gatcgactggcgtgccacgtggaaaagcctcgagaccttcggtctctgat
tcgacacccccagcaagtggagcaggaccggcttctgccgccgcccagat
tctctcccctgctagggatgtcactctccatcctatctttgcagctgtgg
aagagcaactccgctgtatgcgggaagctcaagtcatccttgcagagcag
ttcgattccattcccaagaaggtaaatggcactgctacgcaggatttttc
tgaggacctctgtgtcctccgtgctgatatgaactcgattctagagtccc
ttggtggaccctcggcctttgtcaaggacgtcgcggagaagttctcgcgc
gtccgaagccgtctcgagacgttggaacaatccctaatgtcggggaataa
tccgaccgagcccgttgcagtatcctacaagggaagaaaggaagagaacc
gccaggctcgaaagaagcaaaggaacacggatcccgaaccgtcagactcc
tcatcctcggagtccgactcttccgattcatcggtagaagtagctcgctg
tgagcgttcctcacgctctaagcggtcaacagccacccatggtgtgatct
gcgcccgcacgaaggaaaggaagcacataggtttgaaggagctgaaaccg
accaattcactctttaagattctcttatcataccggtactaccgtttgga
ggactcctctttggatagtacaccccgtggtatggggagagtgaaggact
gcagtaagcgaatgtagctctcaattcgaaaccagttgttttctggagaa
gacccaatattggtgttgcatttcttggcacgctttgtcgcggaagctga
catccttggaatgaacgagggacaggcctacattgccttaccgtacttgt
tacgtgggcttgcagaagaccagtatcactctgtgagaggtacatcacgc
gcgtccgaaggaggggtaacctgctggcccgaagcagttcagtacctcct
aagttcaaatgctactaaccccgccattcagcaggctatacgcggcctgc
gggacactcgccaacggccagacgagtcgggaactgattattctacgctc
ctgaacaaggcattccaccgctttggcaatgtttaccccgctgaagagcg
ttgtaccatgtttatcgatggtttggacccggcgatccggattattgctg
ctcgacgtcgagaagatagacctaaagccacgtatttggaactagaggag
ttcgtcggcgcagaaggtgaagccttgcgcgcacgcactcctggatccag
ggttaggtcctcaaaagcgttgatgttacaaccgggtaccccgtcagctt
tgataatcgaggaacaggcctctcgaagggattatgataacgtgcagcta
gcccatatcgacctccattccatcccgacaacgaagttaccctcaacctt
ggacgaatcacaatatgtgattgaggatgacacgctactctatgcggata
atggtcgcgttcgtgcgccgcgcgtcccacacgagagtggtaatgtccgc
ttttcgcgtgctggttggagagatacccgccccgtggtgatgttcgccga
gcctcgccacccaactccggcttctggtctgatttgtcacctttgctaca
aaacaggccatacttctccacaatgtgtgttgtctctccgagaatgggca
caagtcgtaatcaattacgaggccctatcccaggagaacaaagcagttgt
tccgaatgcatcgtatatccgttctcaaaaggatgttccacatcacgtgt
tgcatccccgagctctggtcgtacctgcaccggaatcccgtgtcaccgac
gttgtcagtcaccccaccgcttctgcggaaccttctggacctgatgccct
ggcgttgcctgctcaacgtcctgagcagccgcctccggcggagcaggccc
agaaaaacttaatgtgggagtctcctctcaaggaagggcgccctcagagt
cgaggtcgatggcgcccgaggcgtccaagcctcactctccggtcaaaacc
ctttcaaggaaagaggccgtcaatgacgtga

Coding sequence (CDS) from alignment at tig00004433_pilon:904144..906324+

>Gchil1356.t1 ID=Gchil1356.t1|Name=Gchil1356.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2109bp|location=Sequence derived from alignment at tig00004433_pilon:904144..906324+ (Gracilaria chilensis NLEC103_M9 male)
atgtcgtccaaagaccgtccgaggacgcggagtcaaaccggtgcaccgga
accctcgcaaccatcccgaatcccggtccattcacggtctcataccggtg
gatcgactggcgtgccacgtggaaaagcctcgagaccttcggtctctgat
tcgacacccccagcaagtggagcaggaccggcttctgccgccgcccagat
tctctcccctgctagggatgtcactctccatcctatctttgcagctgtgg
aagagcaactccgctgtatgcgggaagctcaagtcatccttgcagagcag
ttcgattccattcccaagaaggtaaatggcactgctacgcaggatttttc
tgaggacctctgtgtcctccgtgctgatatgaactcgattctagagtccc
ttggtggaccctcggcctttgtcaaggacgtcgcggagaagttctcgcgc
gtccgaagccgtctcgagacgttggaacaatccctaatgtcggggaataa
tccgaccgagcccgttgcagtatcctacaagggaagaaaggaagagaacc
gccaggctcgaaagaagcaaaggaacacggatcccgaaccgtcagactcc
tcatcctcggagtccgactcttccgattcatcggtagaagtagctcgctg
tgagcgttcctcacgctctaagcggtcaacagccacccatggtgtgatct
gcgcccgcacgaaggaaaggaagcacataggtttgaaggagctgaaaccg
accaattcactctttaagattctcttatcataccggtactaccgtttgga
ggactcctctttggatagtacaccccgtgacccaatattggtgttgcatt
tcttggcacgctttgtcgcggaagctgacatccttggaatgaacgaggga
caggcctacattgccttaccgtacttgttacgtgggcttgcagaagacca
gtatcactctgtgagaggtacatcacgcgcgtccgaaggaggggtaacct
gctggcccgaagcagttcagtacctcctaagttcaaatgctactaacccc
gccattcagcaggctatacgcggcctgcgggacactcgccaacggccaga
cgagtcgggaactgattattctacgctcctgaacaaggcattccaccgct
ttggcaatgtttaccccgctgaagagcgttgtaccatgtttatcgatggt
ttggacccggcgatccggattattgctgctcgacgtcgagaagatagacc
taaagccacgtatttggaactagaggagttcgtcggcgcagaaggtgaag
ccttgcgcgcacgcactcctggatccagggttaggtcctcaaaagcgttg
atgttacaaccgggtaccccgtcagctttgataatcgaggaacaggcctc
tcgaagggattatgataacgtgcagctagcccatatcgacctccattcca
tcccgacaacgaagttaccctcaaccttggacgaatcacaatatgtgatt
gaggatgacacgctactctatgcggataatggtcgcgttcgtgcgccgcg
cgtcccacacgagagtggtaatgtccgcttttcgcgtgctggttggagag
atacccgccccgtggtgatgttcgccgagcctcgccacccaactccggct
tctggtctgatttgtcacctttgctacaaaacaggccatacttctccaca
atgtgtgttgtctctccgagaatgggcacaagtcgtaatcaattacgagg
ccctatcccaggagaacaaagcagttgttccgaatgcatcgtatatccgt
tctcaaaaggatgttccacatcacgtgttgcatccccgagctctggtcgt
acctgcaccggaatcccgtgtcaccgacgttgtcagtcaccccaccgctt
ctgcggaaccttctggacctgatgccctggcgttgcctgctcaacgtcct
gagcagccgcctccggcggagcaggcccagaaaaacttaatgtgggagtc
tcctctcaaggaagggcgccctcagagtcgaggtcgatggcgcccgaggc
gtccaagcctcactctccggtcaaaaccctttcaaggaaagaggccgtca
atgacgtga