Gchil1354.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1354.t1
Unique NameGchil1354.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length603
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:896370..898283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7994.ENSAMXP00000025636
PFAMsRVT_1,rve
Max annot lvl33208|Metazoa
Evalue8.36e-41
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,48D8K@7711|Chordata,490MU@7742|Vertebrata
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1354Gchil1354Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 896370..898283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1354.t1Gchil1354.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 896370..898283 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1354.t1.stop1Gchil1354.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 896370..896372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1354.t1.CDS1Gchil1354.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 896370..897122 -
Gchil1354.t1.CDS2Gchil1354.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 897228..898283 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1354.t1.exon1Gchil1354.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 896370..897122 -
Gchil1354.t1.exon2Gchil1354.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 897228..898283 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1354.t1.intron1Gchil1354.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004433_pilon 897123..897227 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1354.t1.start1Gchil1354.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 898281..898283 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1354.t1 ID=Gchil1354.t1|Name=Gchil1354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=603bp
MSRLNTSGLETEPVDDDIPCFLVSSHQNGTGEHLEGCWDLPEEGALRNTD
MATQILAIEETNVMPVTREEFLREKAQDAYCRTLADQIRFKGSLLDVDHI
GYIMRRSTLDGSLQKVVPKALHTRVLYLAHYSQLSGHPGATRMYYTLKQQ
FYWPHMAHDVYTFVGQCESCVRTRGGIRKHRKYLKMFPAAGPLEFVAIDL
LGPLRKTKNGYQHILVITDRFSKLTRAIPLKKTMSTTLAIAFLNNWVYPY
GTPLYLLTDNSSNLASKFLEAVCNLFGIKHYFTTAYHPQTNGQVERFNHT
LVSRLRHYTEEHQTGWDELVQPLTYSYNLQVHRSTQTTPFDLVLSRHPPG
IVSRLTAAQKRYKADYDRRVTKVVSVSSGQYVYIDNPPSGKRPRPGDEAD
DEAIDRDINSKLLPKSWGSYKVLNASNHTVTVEQDGIPNTISIDRITVAP
ETVQHRIEAGPSARKPRAVAQRTRPSEDPTPIEVNDDLQRDNPDYNPLTG
TEMQPQTVTAEAPDPAPTHEAPNSEHMNPQGGVPPKDQDQTSEEFPVDRL
VGHTQTYNGLKHTVRWYGWGPEGDTLEPPATILPHFRIRYWRLRKEQMPA
DG*
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spliced messenger RNA

>Gchil1354.t1 ID=Gchil1354.t1|Name=Gchil1354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1809bp|location=Sequence derived from alignment at tig00004433_pilon:896370..898283- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACGCTTAAACACCTCAGGGTTAGAGACAGAACCGGTGGACGATGA
CATCCCTTGCTTTTTGGTATCATCACACCAAAATGGTACCGGCGAACACC
TAGAAGGATGTTGGGACCTACCTGAAGAAGGCGCTTTGCGGAACACCGAC
ATGGCAACGCAGATACTGGCCATAGAGGAAACGAACGTCATGCCCGTAAC
CCGAGAGGAATTTCTACGAGAAAAGGCCCAGGATGCGTACTGCAGAACCC
TGGCTGACCAAATTCGTTTCAAAGGATCACTGTTAGATGTGGACCACATT
GGGTACATCATGAGAAGGTCAACCTTGGATGGTAGCCTTCAAAAGGTGGT
TCCGAAGGCACTGCACACGAGAGTCTTGTATCTCGCGCACTACTCGCAAC
TATCGGGACACCCCGGTGCTACCAGGATGTATTACACCTTGAAACAACAG
TTCTATTGGCCTCATATGGCCCATGATGTCTATACCTTTGTAGGTCAATG
CGAATCTTGTGTTCGTACCCGCGGTGGCATTCGAAAGCATCGAAAGTACC
TCAAGATGTTTCCAGCAGCGGGTCCACTGGAGTTCGTTGCGATAGACCTT
CTAGGACCACTTCGCAAGACCAAGAATGGGTATCAGCACATTCTAGTGAT
CACCGACAGGTTCTCGAAGCTCACGAGAGCGATACCTTTAAAGAAGACGA
TGTCAACCACGCTGGCGATCGCGTTCCTCAACAATTGGGTCTACCCGTAT
GGCACACCACTGTACCTACTGACCGATAATAGTTCAAACTTGGCATCGAA
GTTCTTGGAAGCAGTCTGTAACCTTTTCGGTATTAAGCACTATTTCACTA
CGGCCTACCACCCGCAGACGAACGGACAGGTCGAGCGCTTTAACCACACA
TTGGTATCAAGGCTACGACACTATACAGAAGAGCACCAAACTGGGTGGGA
TGAGCTGGTGCAGCCGCTCACCTACTCCTATAACCTCCAGGTCCACCGGT
CAACGCAGACCACTCCCTTTGATTTGGTTCTTTCGCGACACCCCCCAGGT
ATTGTAAGCCGCCTCACTGCAGCCCAGAAGCGGTACAAGGCCGACTACGA
CCGTAGGGTTACCAAAGTGGTCTCTGTATCTTCGGGACAATATGTCTACA
TAGACAACCCGCCTTCAGGTAAAAGACCACGACCGGGTGATGAAGCGGAC
GATGAAGCTATTGATAGAGATATCAATTCGAAGCTTCTACCCAAATCATG
GGGATCTTATAAGGTATTGAACGCATCAAACCACACCGTTACGGTTGAAC
AGGACGGAATACCGAATACGATATCAATTGACCGTATTACGGTAGCACCT
GAAACGGTTCAACATCGCATTGAAGCAGGCCCCTCAGCCCGAAAGCCCAG
AGCGGTAGCTCAGCGCACTCGACCCTCAGAGGACCCCACCCCAATTGAGG
TGAACGATGACCTTCAACGGGATAATCCGGATTACAACCCTCTAACAGGG
ACGGAAATGCAACCTCAAACGGTAACAGCGGAAGCTCCCGACCCGGCTCC
CACACACGAAGCTCCCAACTCGGAGCATATGAACCCTCAAGGTGGCGTTC
CCCCGAAAGATCAGGACCAAACATCAGAGGAATTTCCCGTTGACCGTCTG
GTGGGCCACACACAAACCTACAATGGTCTGAAGCACACTGTCAGATGGTA
CGGCTGGGGCCCAGAAGGGGACACCCTCGAACCCCCAGCCACAATACTCC
CACACTTCCGTATCAGGTATTGGCGCCTTCGCAAGGAGCAGATGCCTGCA
GACGGCTAA
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protein sequence of Gchil1354.t1

>Gchil1354.t1 ID=Gchil1354.t1|Name=Gchil1354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=603bp
MSRLNTSGLETEPVDDDIPCFLVSSHQNGTGEHLEGCWDLPEEGALRNTD
MATQILAIEETNVMPVTREEFLREKAQDAYCRTLADQIRFKGSLLDVDHI
GYIMRRSTLDGSLQKVVPKALHTRVLYLAHYSQLSGHPGATRMYYTLKQQ
FYWPHMAHDVYTFVGQCESCVRTRGGIRKHRKYLKMFPAAGPLEFVAIDL
LGPLRKTKNGYQHILVITDRFSKLTRAIPLKKTMSTTLAIAFLNNWVYPY
GTPLYLLTDNSSNLASKFLEAVCNLFGIKHYFTTAYHPQTNGQVERFNHT
LVSRLRHYTEEHQTGWDELVQPLTYSYNLQVHRSTQTTPFDLVLSRHPPG
IVSRLTAAQKRYKADYDRRVTKVVSVSSGQYVYIDNPPSGKRPRPGDEAD
DEAIDRDINSKLLPKSWGSYKVLNASNHTVTVEQDGIPNTISIDRITVAP
ETVQHRIEAGPSARKPRAVAQRTRPSEDPTPIEVNDDLQRDNPDYNPLTG
TEMQPQTVTAEAPDPAPTHEAPNSEHMNPQGGVPPKDQDQTSEEFPVDRL
VGHTQTYNGLKHTVRWYGWGPEGDTLEPPATILPHFRIRYWRLRKEQMPA
DG*
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mRNA from alignment at tig00004433_pilon:896370..898283-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1354.t1 ID=Gchil1354.t1|Name=Gchil1354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1914bp|location=Sequence derived from alignment at tig00004433_pilon:896370..898283- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACGCTTAAACACCTCAGGGTTAGAGACAGAACCGGTGGACGATGA
CATCCCTTGCTTTTTGGTATCATCACACCAAAATGGTACCGGCGAACACC
TAGAAGGATGTTGGGACCTACCTGAAGAAGGCGCTTTGCGGAACACCGAC
ATGGCAACGCAGATACTGGCCATAGAGGAAACGAACGTCATGCCCGTAAC
CCGAGAGGAATTTCTACGAGAAAAGGCCCAGGATGCGTACTGCAGAACCC
TGGCTGACCAAATTCGTTTCAAAGGATCACTGTTAGATGTGGACCACATT
GGGTACATCATGAGAAGGTCAACCTTGGATGGTAGCCTTCAAAAGGTGGT
TCCGAAGGCACTGCACACGAGAGTCTTGTATCTCGCGCACTACTCGCAAC
TATCGGGACACCCCGGTGCTACCAGGATGTATTACACCTTGAAACAACAG
TTCTATTGGCCTCATATGGCCCATGATGTCTATACCTTTGTAGGTCAATG
CGAATCTTGTGTTCGTACCCGCGGTGGCATTCGAAAGCATCGAAAGTACC
TCAAGATGTTTCCAGCAGCGGGTCCACTGGAGTTCGTTGCGATAGACCTT
CTAGGACCACTTCGCAAGACCAAGAATGGGTATCAGCACATTCTAGTGAT
CACCGACAGGTTCTCGAAGCTCACGAGAGCGATACCTTTAAAGAAGACGA
TGTCAACCACGCTGGCGATCGCGTTCCTCAACAATTGGGTCTACCCGTAT
GGCACACCACTGTACCTACTGACCGATAATAGTTCAAACTTGGCATCGAA
GTTCTTGGAAGCAGTCTGTAACCTTTTCGGTATTAAGCACTATTTCACTA
CGGCCTACCACCCGCAGACGAACGGACAGGTCGAGCGCTTTAACCACACA
TTGGTATCAAGGCTACGACACTATACAGAAGAGCACCAAACTGGGTGGGA
TGAGCTGGTGCAGCCGCTCACCTACTCCTATAACCTCCAGGTCCACCGGT
CAACGCAGACCACTCCCTTTGATTTGGTTCTTTCGCGACACCCCCCAGGT
ATTGTAGTGCATGGAGATCATACAATCAGCACTGCAGCTGGCACACTTAC
CCCTGCCCAAGTCAAGCGAAATACACTTTTGAGATTGAGGAGGGCTCTCA
AACATGCATAGAGCCGCCTCACTGCAGCCCAGAAGCGGTACAAGGCCGAC
TACGACCGTAGGGTTACCAAAGTGGTCTCTGTATCTTCGGGACAATATGT
CTACATAGACAACCCGCCTTCAGGTAAAAGACCACGACCGGGTGATGAAG
CGGACGATGAAGCTATTGATAGAGATATCAATTCGAAGCTTCTACCCAAA
TCATGGGGATCTTATAAGGTATTGAACGCATCAAACCACACCGTTACGGT
TGAACAGGACGGAATACCGAATACGATATCAATTGACCGTATTACGGTAG
CACCTGAAACGGTTCAACATCGCATTGAAGCAGGCCCCTCAGCCCGAAAG
CCCAGAGCGGTAGCTCAGCGCACTCGACCCTCAGAGGACCCCACCCCAAT
TGAGGTGAACGATGACCTTCAACGGGATAATCCGGATTACAACCCTCTAA
CAGGGACGGAAATGCAACCTCAAACGGTAACAGCGGAAGCTCCCGACCCG
GCTCCCACACACGAAGCTCCCAACTCGGAGCATATGAACCCTCAAGGTGG
CGTTCCCCCGAAAGATCAGGACCAAACATCAGAGGAATTTCCCGTTGACC
GTCTGGTGGGCCACACACAAACCTACAATGGTCTGAAGCACACTGTCAGA
TGGTACGGCTGGGGCCCAGAAGGGGACACCCTCGAACCCCCAGCCACAAT
ACTCCCACACTTCCGTATCAGGTATTGGCGCCTTCGCAAGGAGCAGATGC
CTGCAGACGGCTAA
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Coding sequence (CDS) from alignment at tig00004433_pilon:896370..898283-

>Gchil1354.t1 ID=Gchil1354.t1|Name=Gchil1354.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1809bp|location=Sequence derived from alignment at tig00004433_pilon:896370..898283- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACGCTTAAACACCTCAGGGTTAGAGACAGAACCGGTGGACGATGA
CATCCCTTGCTTTTTGGTATCATCACACCAAAATGGTACCGGCGAACACC
TAGAAGGATGTTGGGACCTACCTGAAGAAGGCGCTTTGCGGAACACCGAC
ATGGCAACGCAGATACTGGCCATAGAGGAAACGAACGTCATGCCCGTAAC
CCGAGAGGAATTTCTACGAGAAAAGGCCCAGGATGCGTACTGCAGAACCC
TGGCTGACCAAATTCGTTTCAAAGGATCACTGTTAGATGTGGACCACATT
GGGTACATCATGAGAAGGTCAACCTTGGATGGTAGCCTTCAAAAGGTGGT
TCCGAAGGCACTGCACACGAGAGTCTTGTATCTCGCGCACTACTCGCAAC
TATCGGGACACCCCGGTGCTACCAGGATGTATTACACCTTGAAACAACAG
TTCTATTGGCCTCATATGGCCCATGATGTCTATACCTTTGTAGGTCAATG
CGAATCTTGTGTTCGTACCCGCGGTGGCATTCGAAAGCATCGAAAGTACC
TCAAGATGTTTCCAGCAGCGGGTCCACTGGAGTTCGTTGCGATAGACCTT
CTAGGACCACTTCGCAAGACCAAGAATGGGTATCAGCACATTCTAGTGAT
CACCGACAGGTTCTCGAAGCTCACGAGAGCGATACCTTTAAAGAAGACGA
TGTCAACCACGCTGGCGATCGCGTTCCTCAACAATTGGGTCTACCCGTAT
GGCACACCACTGTACCTACTGACCGATAATAGTTCAAACTTGGCATCGAA
GTTCTTGGAAGCAGTCTGTAACCTTTTCGGTATTAAGCACTATTTCACTA
CGGCCTACCACCCGCAGACGAACGGACAGGTCGAGCGCTTTAACCACACA
TTGGTATCAAGGCTACGACACTATACAGAAGAGCACCAAACTGGGTGGGA
TGAGCTGGTGCAGCCGCTCACCTACTCCTATAACCTCCAGGTCCACCGGT
CAACGCAGACCACTCCCTTTGATTTGGTTCTTTCGCGACACCCCCCAGGT
ATTGTAAGCCGCCTCACTGCAGCCCAGAAGCGGTACAAGGCCGACTACGA
CCGTAGGGTTACCAAAGTGGTCTCTGTATCTTCGGGACAATATGTCTACA
TAGACAACCCGCCTTCAGGTAAAAGACCACGACCGGGTGATGAAGCGGAC
GATGAAGCTATTGATAGAGATATCAATTCGAAGCTTCTACCCAAATCATG
GGGATCTTATAAGGTATTGAACGCATCAAACCACACCGTTACGGTTGAAC
AGGACGGAATACCGAATACGATATCAATTGACCGTATTACGGTAGCACCT
GAAACGGTTCAACATCGCATTGAAGCAGGCCCCTCAGCCCGAAAGCCCAG
AGCGGTAGCTCAGCGCACTCGACCCTCAGAGGACCCCACCCCAATTGAGG
TGAACGATGACCTTCAACGGGATAATCCGGATTACAACCCTCTAACAGGG
ACGGAAATGCAACCTCAAACGGTAACAGCGGAAGCTCCCGACCCGGCTCC
CACACACGAAGCTCCCAACTCGGAGCATATGAACCCTCAAGGTGGCGTTC
CCCCGAAAGATCAGGACCAAACATCAGAGGAATTTCCCGTTGACCGTCTG
GTGGGCCACACACAAACCTACAATGGTCTGAAGCACACTGTCAGATGGTA
CGGCTGGGGCCCAGAAGGGGACACCCTCGAACCCCCAGCCACAATACTCC
CACACTTCCGTATCAGGTATTGGCGCCTTCGCAAGGAGCAGATGCCTGCA
GACGGCTAA
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