Gchil1353.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1353.t1
Unique Name	Gchil1353.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	358

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004433_pilon	contig	tig00004433_pilon:887942..889015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1150474.JQJI01000035_gene946
PFAMs	Cellulase
Max annot lvl	200918\|Thermotogae
KEGG ko	ko:K01179
KEGG Reaction	R06200,R11307,R11308
KEGG Pathway	ko00500,ko01100,map00500,map01100
Evalue	1.29e-90
EggNOG OGs	COG2730@1\|root,COG2730@2\|Bacteria,2GDQI@200918\|Thermotogae
EC	3.2.1.4
Description	Belongs to the glycosyl hydrolase 5 (cellulase A) family
COG category	G
CAZy	GH5,GH9
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1353	Gchil1353	Gracilaria chilensis NLEC103_M9 male	gene	tig00004433_pilon 887942..889015 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1353.t1.start1	Gchil1353.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004433_pilon 887942..887944 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1353.t1.CDS1	Gchil1353.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004433_pilon 887942..889015 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1353.t1.exon1	Gchil1353.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004433_pilon 887942..889015 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1353.t1.stop1	Gchil1353.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004433_pilon 889013..889015 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1353.t1	Gchil1353.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004433_pilon 887942..889015 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004433_pilon:887942..889015+
coding sequence from alignment at tig00004433_pilon:887942..889015+

mRNA sequence

>Gchil1353.t1 ID=Gchil1353.t1|Name=Gchil1353.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=358bp
MNNIMACSRHNHHWLLFTTVLFLCAFAVGQSPYTPAQYQTLLGVGMDVDW
LKTTSGRTQNWKSREQRGVDVPQIFKTRGFSHVRLRVKDYDLSSINTKTG
LSLLEEMRRTVDDCLDSGLVPVVAFQGAAFKDDPTNPDEMDAVVDWWIEV
ATSLQDRDYLLSYNIIIETTGELKKHNDKMNELYQRVESAVHAIDAQRIL
IIAPNKISNPLELDKLVVPDNEYMMVEWHFYAAGPKPDNPKKQWTTGTDF
EKSLITDKVDVAVGWSTENAIPTWVGAWMPSNYNDGGFTSASCPPSGGSY
SIDEQVIFATFMSKTLQCNGIPYAVNSDTKYYDRNTNEWCAAMAPVVDAI
LTQYSCS*

spliced messenger RNA

>Gchil1353.t1 ID=Gchil1353.t1|Name=Gchil1353.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00004433_pilon:887942..889015+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAACATCATGGCTTGTTCGCGTCACAACCACCATTGGCTTCTTTT
CACCACCGTTTTATTCCTTTGTGCTTTTGCTGTGGGACAGTCACCGTATA
CACCTGCACAGTACCAGACACTGCTCGGCGTTGGAATGGATGTCGATTGG
CTGAAAACCACGTCTGGTCGAACTCAGAATTGGAAATCGCGAGAGCAGAG
AGGAGTTGACGTACCCCAGATTTTCAAAACTCGTGGCTTCTCGCATGTCA
GACTCCGCGTCAAAGACTACGACCTGTCTTCTATCAATACGAAGACCGGT
CTTTCTCTGCTGGAGGAGATGCGAAGGACCGTTGACGACTGCCTTGATTC
TGGACTTGTCCCGGTGGTTGCATTTCAAGGGGCTGCCTTCAAGGATGATC
CCACGAATCCCGACGAGATGGATGCAGTGGTCGACTGGTGGATAGAAGTT
GCGACGTCATTGCAGGATAGGGATTACCTTCTTTCGTACAACATAATAAT
CGAGACGACAGGGGAACTTAAAAAACACAATGACAAGATGAACGAGTTGT
ACCAGAGAGTCGAGAGCGCTGTCCATGCCATCGACGCGCAAAGAATTTTG
ATCATTGCTCCCAACAAGATTTCCAACCCGCTTGAACTTGACAAACTTGT
AGTTCCGGACAACGAGTACATGATGGTGGAATGGCACTTCTACGCGGCTG
GACCCAAGCCCGACAACCCCAAGAAGCAATGGACGACTGGAACGGATTTC
GAAAAGTCGTTGATAACCGACAAAGTGGACGTAGCAGTGGGATGGTCCAC
CGAGAATGCAATTCCAACATGGGTGGGCGCGTGGATGCCCAGCAATTACA
ACGACGGAGGTTTCACCTCGGCGAGTTGCCCTCCTTCGGGCGGTTCATAC
TCGATTGATGAGCAGGTCATTTTTGCCACCTTCATGAGCAAGACCCTGCA
GTGTAACGGAATACCGTACGCCGTGAACTCGGACACCAAGTATTACGATC
GCAACACCAATGAGTGGTGTGCTGCCATGGCTCCTGTGGTAGACGCTATT
CTGACGCAGTACTCCTGCTCTTGA

protein sequence of Gchil1353.t1

>Gchil1353.t1 ID=Gchil1353.t1|Name=Gchil1353.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=358bp
MNNIMACSRHNHHWLLFTTVLFLCAFAVGQSPYTPAQYQTLLGVGMDVDW
LKTTSGRTQNWKSREQRGVDVPQIFKTRGFSHVRLRVKDYDLSSINTKTG
LSLLEEMRRTVDDCLDSGLVPVVAFQGAAFKDDPTNPDEMDAVVDWWIEV
ATSLQDRDYLLSYNIIIETTGELKKHNDKMNELYQRVESAVHAIDAQRIL
IIAPNKISNPLELDKLVVPDNEYMMVEWHFYAAGPKPDNPKKQWTTGTDF
EKSLITDKVDVAVGWSTENAIPTWVGAWMPSNYNDGGFTSASCPPSGGSY
SIDEQVIFATFMSKTLQCNGIPYAVNSDTKYYDRNTNEWCAAMAPVVDAI
LTQYSCS*

mRNA from alignment at tig00004433_pilon:887942..889015+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1353.t1 ID=Gchil1353.t1|Name=Gchil1353.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00004433_pilon:887942..889015+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACAACATCATGGCTTGTTCGCGTCACAACCACCATTGGCTTCTTTT
CACCACCGTTTTATTCCTTTGTGCTTTTGCTGTGGGACAGTCACCGTATA
CACCTGCACAGTACCAGACACTGCTCGGCGTTGGAATGGATGTCGATTGG
CTGAAAACCACGTCTGGTCGAACTCAGAATTGGAAATCGCGAGAGCAGAG
AGGAGTTGACGTACCCCAGATTTTCAAAACTCGTGGCTTCTCGCATGTCA
GACTCCGCGTCAAAGACTACGACCTGTCTTCTATCAATACGAAGACCGGT
CTTTCTCTGCTGGAGGAGATGCGAAGGACCGTTGACGACTGCCTTGATTC
TGGACTTGTCCCGGTGGTTGCATTTCAAGGGGCTGCCTTCAAGGATGATC
CCACGAATCCCGACGAGATGGATGCAGTGGTCGACTGGTGGATAGAAGTT
GCGACGTCATTGCAGGATAGGGATTACCTTCTTTCGTACAACATAATAAT
CGAGACGACAGGGGAACTTAAAAAACACAATGACAAGATGAACGAGTTGT
ACCAGAGAGTCGAGAGCGCTGTCCATGCCATCGACGCGCAAAGAATTTTG
ATCATTGCTCCCAACAAGATTTCCAACCCGCTTGAACTTGACAAACTTGT
AGTTCCGGACAACGAGTACATGATGGTGGAATGGCACTTCTACGCGGCTG
GACCCAAGCCCGACAACCCCAAGAAGCAATGGACGACTGGAACGGATTTC
GAAAAGTCGTTGATAACCGACAAAGTGGACGTAGCAGTGGGATGGTCCAC
CGAGAATGCAATTCCAACATGGGTGGGCGCGTGGATGCCCAGCAATTACA
ACGACGGAGGTTTCACCTCGGCGAGTTGCCCTCCTTCGGGCGGTTCATAC
TCGATTGATGAGCAGGTCATTTTTGCCACCTTCATGAGCAAGACCCTGCA
GTGTAACGGAATACCGTACGCCGTGAACTCGGACACCAAGTATTACGATC
GCAACACCAATGAGTGGTGTGCTGCCATGGCTCCTGTGGTAGACGCTATT
CTGACGCAGTACTCCTGCTCTTGA

Coding sequence (CDS) from alignment at tig00004433_pilon:887942..889015+

>Gchil1353.t1 ID=Gchil1353.t1|Name=Gchil1353.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00004433_pilon:887942..889015+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACAACATCATGGCTTGTTCGCGTCACAACCACCATTGGCTTCTTTT
CACCACCGTTTTATTCCTTTGTGCTTTTGCTGTGGGACAGTCACCGTATA
CACCTGCACAGTACCAGACACTGCTCGGCGTTGGAATGGATGTCGATTGG
CTGAAAACCACGTCTGGTCGAACTCAGAATTGGAAATCGCGAGAGCAGAG
AGGAGTTGACGTACCCCAGATTTTCAAAACTCGTGGCTTCTCGCATGTCA
GACTCCGCGTCAAAGACTACGACCTGTCTTCTATCAATACGAAGACCGGT
CTTTCTCTGCTGGAGGAGATGCGAAGGACCGTTGACGACTGCCTTGATTC
TGGACTTGTCCCGGTGGTTGCATTTCAAGGGGCTGCCTTCAAGGATGATC
CCACGAATCCCGACGAGATGGATGCAGTGGTCGACTGGTGGATAGAAGTT
GCGACGTCATTGCAGGATAGGGATTACCTTCTTTCGTACAACATAATAAT
CGAGACGACAGGGGAACTTAAAAAACACAATGACAAGATGAACGAGTTGT
ACCAGAGAGTCGAGAGCGCTGTCCATGCCATCGACGCGCAAAGAATTTTG
ATCATTGCTCCCAACAAGATTTCCAACCCGCTTGAACTTGACAAACTTGT
AGTTCCGGACAACGAGTACATGATGGTGGAATGGCACTTCTACGCGGCTG
GACCCAAGCCCGACAACCCCAAGAAGCAATGGACGACTGGAACGGATTTC
GAAAAGTCGTTGATAACCGACAAAGTGGACGTAGCAGTGGGATGGTCCAC
CGAGAATGCAATTCCAACATGGGTGGGCGCGTGGATGCCCAGCAATTACA
ACGACGGAGGTTTCACCTCGGCGAGTTGCCCTCCTTCGGGCGGTTCATAC
TCGATTGATGAGCAGGTCATTTTTGCCACCTTCATGAGCAAGACCCTGCA
GTGTAACGGAATACCGTACGCCGTGAACTCGGACACCAAGTATTACGATC
GCAACACCAATGAGTGGTGTGCTGCCATGGCTCCTGTGGTAGACGCTATT
CTGACGCAGTACTCCTGCTCTTGA