Gchil1350.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1350.t1
Unique NameGchil1350.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:876684..877238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702863.1
PFAMsKH_1,STAR_dimer
Max annot lvl2759|Eukaryota
KEGG koko:K14945
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0008150,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048577,GO:0048579,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048586,GO:0048587,GO:0050789,GO:0050793,GO:0051093,GO:0051239,GO:0051241,GO:0065007,GO:0097159,GO:1901363,GO:2000026,GO:2000028,GO:2000241,GO:2000242
Evalue1.36e-32
EggNOG OGsCOG5176@1|root,KOG1588@2759|Eukaryota
DescriptionRNA binding
COG categoryA
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1350Gchil1350Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 876684..877238 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1350.t1.start1Gchil1350.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 876684..876686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1350.t1.CDS1Gchil1350.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 876684..877238 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1350.t1.exon1Gchil1350.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 876684..877238 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1350.t1.stop1Gchil1350.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 877236..877238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1350.t1Gchil1350.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 876684..877238 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1350.t1 ID=Gchil1350.t1|Name=Gchil1350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=185bp
MIRGKGSIRKDKEPDVRGKPGWQHVFNEPLHVVIEPPHTLPEPAASAALS
RATEAVELLLVPVPEERDALKRHQLRALAIMNGTFRAARPYTPDSHLLPP
PCSSSFAARLAHTAVPTTQVKVVASSALSAGGFIGREFYNGAFSNEALLA
SSARSAWEQVPSSSPPVSVSVTPSTSLFDESPRY*
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spliced messenger RNA

>Gchil1350.t1 ID=Gchil1350.t1|Name=Gchil1350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00004433_pilon:876684..877238+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCGCGGAAAGGGCAGCATCCGCAAGGACAAGGAGCCCGACGTGCG
CGGCAAGCCCGGCTGGCAGCACGTTTTCAATGAGCCACTTCATGTTGTCA
TCGAGCCGCCGCACACTTTGCCCGAGCCCGCTGCTTCTGCTGCCTTGTCG
CGCGCCACCGAGGCTGTCGAGCTCTTGCTTGTGCCTGTTCCCGAGGAGCG
CGACGCGCTCAAGAGACATCAGTTGCGTGCGCTCGCCATCATGAACGGTA
CCTTTCGCGCCGCCCGCCCCTATACCCCCGACTCGCACCTGCTGCCCCCG
CCTTGCTCCTCCTCGTTTGCTGCTCGCCTTGCACACACCGCCGTACCAAC
CACTCAAGTCAAGGTGGTTGCGAGCTCGGCGCTCAGCGCCGGCGGCTTCA
TTGGCCGTGAGTTTTACAACGGCGCCTTCTCCAACGAAGCGCTCCTCGCC
TCCTCTGCTCGCTCCGCTTGGGAACAAGTGCCCTCTTCTTCACCGCCTGT
TTCCGTCTCTGTCACTCCGTCAACCTCTTTGTTTGACGAATCCCCTCGCT
ACTAG
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protein sequence of Gchil1350.t1

>Gchil1350.t1 ID=Gchil1350.t1|Name=Gchil1350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=185bp
MIRGKGSIRKDKEPDVRGKPGWQHVFNEPLHVVIEPPHTLPEPAASAALS
RATEAVELLLVPVPEERDALKRHQLRALAIMNGTFRAARPYTPDSHLLPP
PCSSSFAARLAHTAVPTTQVKVVASSALSAGGFIGREFYNGAFSNEALLA
SSARSAWEQVPSSSPPVSVSVTPSTSLFDESPRY*
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mRNA from alignment at tig00004433_pilon:876684..877238+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1350.t1 ID=Gchil1350.t1|Name=Gchil1350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00004433_pilon:876684..877238+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCCGCGGAAAGGGCAGCATCCGCAAGGACAAGGAGCCCGACGTGCG
CGGCAAGCCCGGCTGGCAGCACGTTTTCAATGAGCCACTTCATGTTGTCA
TCGAGCCGCCGCACACTTTGCCCGAGCCCGCTGCTTCTGCTGCCTTGTCG
CGCGCCACCGAGGCTGTCGAGCTCTTGCTTGTGCCTGTTCCCGAGGAGCG
CGACGCGCTCAAGAGACATCAGTTGCGTGCGCTCGCCATCATGAACGGTA
CCTTTCGCGCCGCCCGCCCCTATACCCCCGACTCGCACCTGCTGCCCCCG
CCTTGCTCCTCCTCGTTTGCTGCTCGCCTTGCACACACCGCCGTACCAAC
CACTCAAGTCAAGGTGGTTGCGAGCTCGGCGCTCAGCGCCGGCGGCTTCA
TTGGCCGTGAGTTTTACAACGGCGCCTTCTCCAACGAAGCGCTCCTCGCC
TCCTCTGCTCGCTCCGCTTGGGAACAAGTGCCCTCTTCTTCACCGCCTGT
TTCCGTCTCTGTCACTCCGTCAACCTCTTTGTTTGACGAATCCCCTCGCT
ACTAG
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Coding sequence (CDS) from alignment at tig00004433_pilon:876684..877238+

>Gchil1350.t1 ID=Gchil1350.t1|Name=Gchil1350.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00004433_pilon:876684..877238+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCCGCGGAAAGGGCAGCATCCGCAAGGACAAGGAGCCCGACGTGCG
CGGCAAGCCCGGCTGGCAGCACGTTTTCAATGAGCCACTTCATGTTGTCA
TCGAGCCGCCGCACACTTTGCCCGAGCCCGCTGCTTCTGCTGCCTTGTCG
CGCGCCACCGAGGCTGTCGAGCTCTTGCTTGTGCCTGTTCCCGAGGAGCG
CGACGCGCTCAAGAGACATCAGTTGCGTGCGCTCGCCATCATGAACGGTA
CCTTTCGCGCCGCCCGCCCCTATACCCCCGACTCGCACCTGCTGCCCCCG
CCTTGCTCCTCCTCGTTTGCTGCTCGCCTTGCACACACCGCCGTACCAAC
CACTCAAGTCAAGGTGGTTGCGAGCTCGGCGCTCAGCGCCGGCGGCTTCA
TTGGCCGTGAGTTTTACAACGGCGCCTTCTCCAACGAAGCGCTCCTCGCC
TCCTCTGCTCGCTCCGCTTGGGAACAAGTGCCCTCTTCTTCACCGCCTGT
TTCCGTCTCTGTCACTCCGTCAACCTCTTTGTTTGACGAATCCCCTCGCT
ACTAG
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