Gchil1346.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1346.t1
Unique NameGchil1346.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:801618..803029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1079460.ATTQ01000026_gene755
PFAMsOCD_Mu_crystall
Max annot lvl28211|Alphaproteobacteria
Evalue3.23e-11
EggNOG OGsCOG2423@1|root,COG2423@2|Bacteria,1PPG2@1224|Proteobacteria,2VCZW@28211|Alphaproteobacteria,4B9QQ@82115|Rhizobiaceae
DescriptionOrnithine cyclodeaminase/mu-crystallin family
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1346Gchil1346Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 801618..803029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1346.t1Gchil1346.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 801618..803029 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1346.t1.stop1Gchil1346.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 801618..801620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1346.t1.CDS1Gchil1346.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 801618..802263 -
Gchil1346.t1.CDS2Gchil1346.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 803019..803029 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1346.t1.exon1Gchil1346.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 801618..802263 -
Gchil1346.t1.exon2Gchil1346.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 803019..803029 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1346.t1.intron1Gchil1346.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004433_pilon 802264..803018 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1346.t1.start1Gchil1346.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 803027..803029 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1346.t1 ID=Gchil1346.t1|Name=Gchil1346.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=219bp
MLQRSNLRIFMFGSGKVAQEIARMLNQCFCKKISTLTMCSPNSSPCVVEF
LKKTPGWSLCIIPNTEVNYASLKQANLVITVTSNTADAGPLMKSKDDMRD
DVVALNLACNELPMDFIHKTLKQGTMICDDVQLVHERCGQSLTNYFNRNG
KTLADEALNYSIRNLAEFIPNNYPNTKPVNGHTNKKPACVTCSGMGALDV
WVALKLLKAIAEMKGGII*
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spliced messenger RNA

>Gchil1346.t1 ID=Gchil1346.t1|Name=Gchil1346.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00004433_pilon:801618..803029- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCAAAGGTCAAATCTTCGCATCTTCATGTTCGGATCTGGAAAGGT
TGCTCAAGAAATCGCCCGAATGCTGAACCAGTGCTTTTGTAAAAAGATCA
GCACGTTGACCATGTGCAGCCCGAATTCGAGTCCTTGCGTTGTCGAGTTC
CTTAAGAAGACACCAGGATGGTCGCTCTGCATCATCCCCAATACCGAGGT
CAATTACGCTTCCTTGAAACAAGCGAACCTGGTTATCACCGTCACCTCCA
ACACAGCTGACGCCGGACCGTTGATGAAGAGCAAGGATGATATGCGTGAT
GACGTTGTGGCTTTGAACCTGGCATGCAATGAATTGCCGATGGATTTTAT
CCACAAAACCTTGAAGCAAGGGACCATGATCTGCGACGATGTCCAGCTTG
TCCACGAACGCTGTGGCCAGAGCTTGACGAATTATTTCAACCGCAATGGC
AAGACTTTGGCTGATGAAGCCTTAAATTACAGTATCCGAAACTTGGCCGA
GTTTATCCCCAACAACTACCCGAACACGAAACCCGTCAACGGCCATACCA
ACAAAAAGCCTGCCTGCGTCACCTGTAGCGGCATGGGCGCTTTAGACGTT
TGGGTGGCATTGAAACTGCTTAAGGCCATCGCGGAAATGAAAGGGGGCAT
CATCTGA
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protein sequence of Gchil1346.t1

>Gchil1346.t1 ID=Gchil1346.t1|Name=Gchil1346.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=219bp
MLQRSNLRIFMFGSGKVAQEIARMLNQCFCKKISTLTMCSPNSSPCVVEF
LKKTPGWSLCIIPNTEVNYASLKQANLVITVTSNTADAGPLMKSKDDMRD
DVVALNLACNELPMDFIHKTLKQGTMICDDVQLVHERCGQSLTNYFNRNG
KTLADEALNYSIRNLAEFIPNNYPNTKPVNGHTNKKPACVTCSGMGALDV
WVALKLLKAIAEMKGGII*
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mRNA from alignment at tig00004433_pilon:801618..803029-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1346.t1 ID=Gchil1346.t1|Name=Gchil1346.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1412bp|location=Sequence derived from alignment at tig00004433_pilon:801618..803029- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCAAAGGTAAGGAGTGGAATTGTTAGAGTTTGGAAATATTTTTAG
CATGGTTGGAATGCGGTTTAAAACGGCTTTCAGACCAATGTTATGAAACA
CAAATCGTGAAGCACATGTCATGTGCTTCTCGACCTGTGTTATATATCTA
CGCCATCTTGAAGTGATGATCTGTAGCTTTTGTCGCGACACTCCGATTCA
GAAGACAGCAGCCAAACCGAAGCTCGATTTCGACACCCCTTACTTTGCAC
AAGATTCCAGACCGCCGGATTACGAAATCCCACTACAATGACCATTGCAC
AAAAAGAAAAGCCCACCAAACCGCTTGCGGTTGCCTACTGGACATCCAAG
GACTGGGAATACCTTGGCATCAATCTTGATGCCGCTTTCGTTTACCAAAC
CAGCGGCGGCTACTGGACCTTGCATCGACACAATCAAGCGGCGAGCAAAA
AGATCCATCTCTACATGGATACCGAAGATCTCGAGAAAGCCAACGGATAA
GCTGAAGCCGCCAAATTGTATAGGGGGCAGGAGATCCAGTTCCGGACGAG
TGCACTTGTGGGGGTTGTTGGAAACCTCACCGGAACCAAGTTCCTACGGT
CCAATCCGCTCAACAAGGAGCTCGGCATTCCGCGTCAACACTCCGACATC
ATCGTTGCAGACCGCTTCTCCGGTTGCACCTTGGGCATTGTTGAAAGAAG
CGGCATCTCCGATATCCGCACGGCTCTCTATGCGGCGGTAACAATCGACA
TTTTCTTCCCAATCAGGTCAAATCTTCGCATCTTCATGTTCGGATCTGGA
AAGGTTGCTCAAGAAATCGCCCGAATGCTGAACCAGTGCTTTTGTAAAAA
GATCAGCACGTTGACCATGTGCAGCCCGAATTCGAGTCCTTGCGTTGTCG
AGTTCCTTAAGAAGACACCAGGATGGTCGCTCTGCATCATCCCCAATACC
GAGGTCAATTACGCTTCCTTGAAACAAGCGAACCTGGTTATCACCGTCAC
CTCCAACACAGCTGACGCCGGACCGTTGATGAAGAGCAAGGATGATATGC
GTGATGACGTTGTGGCTTTGAACCTGGCATGCAATGAATTGCCGATGGAT
TTTATCCACAAAACCTTGAAGCAAGGGACCATGATCTGCGACGATGTCCA
GCTTGTCCACGAACGCTGTGGCCAGAGCTTGACGAATTATTTCAACCGCA
ATGGCAAGACTTTGGCTGATGAAGCCTTAAATTACAGTATCCGAAACTTG
GCCGAGTTTATCCCCAACAACTACCCGAACACGAAACCCGTCAACGGCCA
TACCAACAAAAAGCCTGCCTGCGTCACCTGTAGCGGCATGGGCGCTTTAG
ACGTTTGGGTGGCATTGAAACTGCTTAAGGCCATCGCGGAAATGAAAGGG
GGCATCATCTGA
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Coding sequence (CDS) from alignment at tig00004433_pilon:801618..803029-

>Gchil1346.t1 ID=Gchil1346.t1|Name=Gchil1346.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00004433_pilon:801618..803029- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCAAAGGTCAAATCTTCGCATCTTCATGTTCGGATCTGGAAAGGT
TGCTCAAGAAATCGCCCGAATGCTGAACCAGTGCTTTTGTAAAAAGATCA
GCACGTTGACCATGTGCAGCCCGAATTCGAGTCCTTGCGTTGTCGAGTTC
CTTAAGAAGACACCAGGATGGTCGCTCTGCATCATCCCCAATACCGAGGT
CAATTACGCTTCCTTGAAACAAGCGAACCTGGTTATCACCGTCACCTCCA
ACACAGCTGACGCCGGACCGTTGATGAAGAGCAAGGATGATATGCGTGAT
GACGTTGTGGCTTTGAACCTGGCATGCAATGAATTGCCGATGGATTTTAT
CCACAAAACCTTGAAGCAAGGGACCATGATCTGCGACGATGTCCAGCTTG
TCCACGAACGCTGTGGCCAGAGCTTGACGAATTATTTCAACCGCAATGGC
AAGACTTTGGCTGATGAAGCCTTAAATTACAGTATCCGAAACTTGGCCGA
GTTTATCCCCAACAACTACCCGAACACGAAACCCGTCAACGGCCATACCA
ACAAAAAGCCTGCCTGCGTCACCTGTAGCGGCATGGGCGCTTTAGACGTT
TGGGTGGCATTGAAACTGCTTAAGGCCATCGCGGAAATGAAAGGGGGCAT
CATCTGA
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