Gchil1324.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1324.t1
Unique NameGchil1324.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:313425..314324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1324Gchil1324Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 313425..314324 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1324.t1.start1Gchil1324.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 313425..313427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1324.t1.CDS1Gchil1324.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 313425..314324 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1324.t1.exon1Gchil1324.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 313425..314324 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1324.t1.stop1Gchil1324.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 314322..314324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1324.t1Gchil1324.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 313425..314324 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1324.t1 ID=Gchil1324.t1|Name=Gchil1324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=300bp
MKLPNVPVVSGTILSALVLLLFVSGRYESLIPQLRSPTEGEALLLDENPS
LSTRNTSKLPDLPSSPAEHLTCVVYERPPRTGSTTIGEALERCLLHLGYK
QPVWKGFQARSMVISDMLQQPYERVMAVTRHFYMNGTALRQLRNRCESLL
YITSTATMKQRLWSLVKYRQLQTHGNTSLSKEQVQLAIEELKREKAQIKI
LNSYPYLYSNGTAVDVEGDERIVPDYVIRKSMLVDDVSDLLHAFGCSSRV
ISQNVHRARHDEVLDAIDIDDNDSLHTRLLQRAEERNEFGLKKASNFGR*
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spliced messenger RNA

>Gchil1324.t1 ID=Gchil1324.t1|Name=Gchil1324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004433_pilon:313425..314324+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATTACCCAACGTTCCGGTCGTCTCAGGGACTATATTGTCGGCACT
GGTGCTCCTTCTTTTCGTATCTGGGCGCTACGAGTCGCTTATCCCTCAGC
TTCGCTCACCAACTGAAGGGGAAGCACTGCTTCTTGATGAAAACCCCAGT
CTGTCCACGCGAAATACTTCGAAGCTGCCAGATTTACCGTCAAGCCCAGC
GGAACACTTGACTTGCGTTGTTTACGAACGACCTCCTCGAACGGGGTCTA
CAACGATTGGAGAGGCGTTGGAAAGATGCTTGTTACATCTAGGTTACAAA
CAGCCGGTATGGAAGGGATTTCAGGCTCGTTCTATGGTGATATCAGATAT
GTTGCAACAACCTTACGAGCGAGTAATGGCCGTGACTCGTCACTTTTACA
TGAATGGAACCGCCCTACGTCAACTGCGAAACAGATGCGAATCGCTTCTC
TACATTACGTCAACAGCTACGATGAAGCAAAGATTATGGTCGCTTGTCAA
GTATCGACAACTTCAAACACATGGGAACACATCACTGAGTAAAGAGCAAG
TTCAGCTAGCCATTGAAGAACTCAAGAGAGAAAAAGCGCAGATCAAGATT
TTGAACTCTTATCCATACTTGTACAGCAACGGGACAGCAGTTGACGTTGA
GGGCGATGAACGTATTGTGCCCGACTATGTGATACGAAAGTCGATGCTAG
TCGATGATGTTTCGGATCTACTACACGCTTTCGGATGCTCGTCGCGGGTG
ATTAGTCAGAACGTACATCGAGCGAGGCATGACGAGGTTCTAGACGCCAT
CGATATCGATGACAACGACTCATTACACACTCGACTTCTACAACGCGCAG
AAGAACGCAACGAATTTGGGTTGAAGAAGGCTTCCAATTTTGGTCGTTGA
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protein sequence of Gchil1324.t1

>Gchil1324.t1 ID=Gchil1324.t1|Name=Gchil1324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=300bp
MKLPNVPVVSGTILSALVLLLFVSGRYESLIPQLRSPTEGEALLLDENPS
LSTRNTSKLPDLPSSPAEHLTCVVYERPPRTGSTTIGEALERCLLHLGYK
QPVWKGFQARSMVISDMLQQPYERVMAVTRHFYMNGTALRQLRNRCESLL
YITSTATMKQRLWSLVKYRQLQTHGNTSLSKEQVQLAIEELKREKAQIKI
LNSYPYLYSNGTAVDVEGDERIVPDYVIRKSMLVDDVSDLLHAFGCSSRV
ISQNVHRARHDEVLDAIDIDDNDSLHTRLLQRAEERNEFGLKKASNFGR*
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mRNA from alignment at tig00004433_pilon:313425..314324+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1324.t1 ID=Gchil1324.t1|Name=Gchil1324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004433_pilon:313425..314324+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAATTACCCAACGTTCCGGTCGTCTCAGGGACTATATTGTCGGCACT
GGTGCTCCTTCTTTTCGTATCTGGGCGCTACGAGTCGCTTATCCCTCAGC
TTCGCTCACCAACTGAAGGGGAAGCACTGCTTCTTGATGAAAACCCCAGT
CTGTCCACGCGAAATACTTCGAAGCTGCCAGATTTACCGTCAAGCCCAGC
GGAACACTTGACTTGCGTTGTTTACGAACGACCTCCTCGAACGGGGTCTA
CAACGATTGGAGAGGCGTTGGAAAGATGCTTGTTACATCTAGGTTACAAA
CAGCCGGTATGGAAGGGATTTCAGGCTCGTTCTATGGTGATATCAGATAT
GTTGCAACAACCTTACGAGCGAGTAATGGCCGTGACTCGTCACTTTTACA
TGAATGGAACCGCCCTACGTCAACTGCGAAACAGATGCGAATCGCTTCTC
TACATTACGTCAACAGCTACGATGAAGCAAAGATTATGGTCGCTTGTCAA
GTATCGACAACTTCAAACACATGGGAACACATCACTGAGTAAAGAGCAAG
TTCAGCTAGCCATTGAAGAACTCAAGAGAGAAAAAGCGCAGATCAAGATT
TTGAACTCTTATCCATACTTGTACAGCAACGGGACAGCAGTTGACGTTGA
GGGCGATGAACGTATTGTGCCCGACTATGTGATACGAAAGTCGATGCTAG
TCGATGATGTTTCGGATCTACTACACGCTTTCGGATGCTCGTCGCGGGTG
ATTAGTCAGAACGTACATCGAGCGAGGCATGACGAGGTTCTAGACGCCAT
CGATATCGATGACAACGACTCATTACACACTCGACTTCTACAACGCGCAG
AAGAACGCAACGAATTTGGGTTGAAGAAGGCTTCCAATTTTGGTCGTTGA
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Coding sequence (CDS) from alignment at tig00004433_pilon:313425..314324+

>Gchil1324.t1 ID=Gchil1324.t1|Name=Gchil1324.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00004433_pilon:313425..314324+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAATTACCCAACGTTCCGGTCGTCTCAGGGACTATATTGTCGGCACT
GGTGCTCCTTCTTTTCGTATCTGGGCGCTACGAGTCGCTTATCCCTCAGC
TTCGCTCACCAACTGAAGGGGAAGCACTGCTTCTTGATGAAAACCCCAGT
CTGTCCACGCGAAATACTTCGAAGCTGCCAGATTTACCGTCAAGCCCAGC
GGAACACTTGACTTGCGTTGTTTACGAACGACCTCCTCGAACGGGGTCTA
CAACGATTGGAGAGGCGTTGGAAAGATGCTTGTTACATCTAGGTTACAAA
CAGCCGGTATGGAAGGGATTTCAGGCTCGTTCTATGGTGATATCAGATAT
GTTGCAACAACCTTACGAGCGAGTAATGGCCGTGACTCGTCACTTTTACA
TGAATGGAACCGCCCTACGTCAACTGCGAAACAGATGCGAATCGCTTCTC
TACATTACGTCAACAGCTACGATGAAGCAAAGATTATGGTCGCTTGTCAA
GTATCGACAACTTCAAACACATGGGAACACATCACTGAGTAAAGAGCAAG
TTCAGCTAGCCATTGAAGAACTCAAGAGAGAAAAAGCGCAGATCAAGATT
TTGAACTCTTATCCATACTTGTACAGCAACGGGACAGCAGTTGACGTTGA
GGGCGATGAACGTATTGTGCCCGACTATGTGATACGAAAGTCGATGCTAG
TCGATGATGTTTCGGATCTACTACACGCTTTCGGATGCTCGTCGCGGGTG
ATTAGTCAGAACGTACATCGAGCGAGGCATGACGAGGTTCTAGACGCCAT
CGATATCGATGACAACGACTCATTACACACTCGACTTCTACAACGCGCAG
AAGAACGCAACGAATTTGGGTTGAAGAAGGCTTCCAATTTTGGTCGTTGA
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