Gchil1323.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1323.t1
Unique NameGchil1323.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length479
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:278714..280150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1323Gchil1323Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 278714..280150 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1323.t1.start1Gchil1323.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 278714..278716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1323.t1.CDS1Gchil1323.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 278714..280150 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1323.t1.exon1Gchil1323.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 278714..280150 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1323.t1.stop1Gchil1323.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 280148..280150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1323.t1Gchil1323.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 278714..280150 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1323.t1 ID=Gchil1323.t1|Name=Gchil1323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=479bp
MGHLRAILKLFQTIEDGQQGIPTAARISNNSFVIISALSSGIIDVYTRPC
ITAKFAKSETSYLKHQKKKSQVTALALQDGGAQAVSGDDQGFLHVWLTND
PTKCTWRQCGYGPVVDVAISNRYILASFKGIDEKDGCMLLLNKGLNIEDD
WEKVKVYKPGRYTKCALSEILKLKELNVVYYLNKSLIYEKNPQDADDQPF
SSLEVTKPFFVCRNPACLTTMVFAALVQRQLMLWDPKRPAVDGKNPFYFN
LKSSEPVAFNKTSSISSVCDGHMFILTILENTLSVVTLEKEIKPKPKGPI
TYEEKDNPTKHTVFHAVRELVNGNPEPVDRIMAEVDGTDTTEMTSNSRTA
IIGEETPDRISETPPNSKADNESSIPPDTPSVPVRVVLKDETPEMDRSNV
PSDSPSERQEVDVEPKEVAGNNATPTATEAEPGDERIPNEPFNVVGQDDS
IIVSDGEDNEEEVEEDPEGMGHEFWGLF*
back to top

spliced messenger RNA

>Gchil1323.t1 ID=Gchil1323.t1|Name=Gchil1323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00004433_pilon:278714..280150+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCATCTCCGTGCCATTTTAAAACTCTTTCAAACTATCGAAGATGG
ACAACAAGGTATTCCCACCGCCGCTAGAATATCGAACAATTCATTTGTCA
TTATCAGTGCTCTCAGCAGCGGCATCATAGATGTTTACACCCGCCCTTGT
ATCACTGCCAAATTTGCCAAGTCGGAAACTTCTTACCTCAAACACCAAAA
AAAAAAATCACAGGTAACTGCACTTGCTCTTCAAGACGGAGGTGCCCAGG
CAGTCTCAGGAGATGACCAAGGCTTTCTGCATGTCTGGCTAACCAACGAC
CCGACAAAGTGCACTTGGCGGCAGTGCGGTTATGGTCCAGTTGTGGATGT
GGCGATCAGCAATCGCTACATTTTAGCCAGTTTCAAAGGCATCGATGAAA
AGGATGGCTGTATGTTGTTGTTGAATAAGGGCCTCAATATCGAAGACGAT
TGGGAAAAAGTCAAGGTGTATAAGCCGGGCAGGTACACTAAATGCGCACT
GTCTGAGATATTAAAGCTGAAAGAACTAAACGTCGTGTATTACTTGAACA
AATCTCTCATCTACGAGAAGAATCCGCAGGACGCAGATGACCAGCCATTC
AGTTCGTTGGAAGTAACGAAACCGTTTTTCGTGTGCCGAAATCCGGCGTG
CCTGACAACAATGGTGTTTGCAGCATTGGTTCAGCGACAGTTGATGCTTT
GGGATCCAAAACGTCCAGCAGTGGATGGCAAAAATCCCTTCTATTTCAAC
CTTAAGTCATCGGAGCCGGTCGCGTTTAACAAAACGTCTTCTATCTCTTC
TGTCTGCGATGGTCACATGTTTATTCTCACCATCCTCGAAAACACGTTGT
CTGTAGTTACATTGGAGAAAGAAATCAAGCCAAAGCCAAAAGGTCCGATA
ACATATGAAGAAAAGGATAACCCTACTAAACATACAGTTTTTCATGCAGT
AAGGGAACTGGTTAATGGAAACCCAGAACCAGTGGATAGAATCATGGCGG
AAGTCGACGGTACAGATACAACGGAGATGACCTCGAACTCGAGAACAGCA
ATAATCGGGGAAGAAACTCCCGATAGAATCTCGGAAACGCCACCGAATTC
CAAAGCGGATAACGAATCTAGTATTCCACCAGATACACCTTCAGTCCCTG
TGCGCGTTGTCTTGAAGGATGAAACCCCCGAGATGGATAGAAGTAATGTA
CCGTCAGATTCCCCGAGCGAAAGACAAGAAGTAGATGTAGAACCCAAAGA
AGTCGCAGGTAACAATGCCACCCCCACTGCAACGGAAGCAGAACCCGGAG
ATGAGCGGATTCCGAACGAGCCATTCAACGTTGTCGGGCAAGATGATTCT
ATAATTGTCTCAGATGGGGAAGACAATGAAGAAGAGGTTGAAGAAGATCC
GGAAGGAATGGGTCACGAATTCTGGGGCCTGTTCTAA
back to top

protein sequence of Gchil1323.t1

>Gchil1323.t1 ID=Gchil1323.t1|Name=Gchil1323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=479bp
MGHLRAILKLFQTIEDGQQGIPTAARISNNSFVIISALSSGIIDVYTRPC
ITAKFAKSETSYLKHQKKKSQVTALALQDGGAQAVSGDDQGFLHVWLTND
PTKCTWRQCGYGPVVDVAISNRYILASFKGIDEKDGCMLLLNKGLNIEDD
WEKVKVYKPGRYTKCALSEILKLKELNVVYYLNKSLIYEKNPQDADDQPF
SSLEVTKPFFVCRNPACLTTMVFAALVQRQLMLWDPKRPAVDGKNPFYFN
LKSSEPVAFNKTSSISSVCDGHMFILTILENTLSVVTLEKEIKPKPKGPI
TYEEKDNPTKHTVFHAVRELVNGNPEPVDRIMAEVDGTDTTEMTSNSRTA
IIGEETPDRISETPPNSKADNESSIPPDTPSVPVRVVLKDETPEMDRSNV
PSDSPSERQEVDVEPKEVAGNNATPTATEAEPGDERIPNEPFNVVGQDDS
IIVSDGEDNEEEVEEDPEGMGHEFWGLF*
back to top

mRNA from alignment at tig00004433_pilon:278714..280150+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1323.t1 ID=Gchil1323.t1|Name=Gchil1323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00004433_pilon:278714..280150+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCATCTCCGTGCCATTTTAAAACTCTTTCAAACTATCGAAGATGG
ACAACAAGGTATTCCCACCGCCGCTAGAATATCGAACAATTCATTTGTCA
TTATCAGTGCTCTCAGCAGCGGCATCATAGATGTTTACACCCGCCCTTGT
ATCACTGCCAAATTTGCCAAGTCGGAAACTTCTTACCTCAAACACCAAAA
AAAAAAATCACAGGTAACTGCACTTGCTCTTCAAGACGGAGGTGCCCAGG
CAGTCTCAGGAGATGACCAAGGCTTTCTGCATGTCTGGCTAACCAACGAC
CCGACAAAGTGCACTTGGCGGCAGTGCGGTTATGGTCCAGTTGTGGATGT
GGCGATCAGCAATCGCTACATTTTAGCCAGTTTCAAAGGCATCGATGAAA
AGGATGGCTGTATGTTGTTGTTGAATAAGGGCCTCAATATCGAAGACGAT
TGGGAAAAAGTCAAGGTGTATAAGCCGGGCAGGTACACTAAATGCGCACT
GTCTGAGATATTAAAGCTGAAAGAACTAAACGTCGTGTATTACTTGAACA
AATCTCTCATCTACGAGAAGAATCCGCAGGACGCAGATGACCAGCCATTC
AGTTCGTTGGAAGTAACGAAACCGTTTTTCGTGTGCCGAAATCCGGCGTG
CCTGACAACAATGGTGTTTGCAGCATTGGTTCAGCGACAGTTGATGCTTT
GGGATCCAAAACGTCCAGCAGTGGATGGCAAAAATCCCTTCTATTTCAAC
CTTAAGTCATCGGAGCCGGTCGCGTTTAACAAAACGTCTTCTATCTCTTC
TGTCTGCGATGGTCACATGTTTATTCTCACCATCCTCGAAAACACGTTGT
CTGTAGTTACATTGGAGAAAGAAATCAAGCCAAAGCCAAAAGGTCCGATA
ACATATGAAGAAAAGGATAACCCTACTAAACATACAGTTTTTCATGCAGT
AAGGGAACTGGTTAATGGAAACCCAGAACCAGTGGATAGAATCATGGCGG
AAGTCGACGGTACAGATACAACGGAGATGACCTCGAACTCGAGAACAGCA
ATAATCGGGGAAGAAACTCCCGATAGAATCTCGGAAACGCCACCGAATTC
CAAAGCGGATAACGAATCTAGTATTCCACCAGATACACCTTCAGTCCCTG
TGCGCGTTGTCTTGAAGGATGAAACCCCCGAGATGGATAGAAGTAATGTA
CCGTCAGATTCCCCGAGCGAAAGACAAGAAGTAGATGTAGAACCCAAAGA
AGTCGCAGGTAACAATGCCACCCCCACTGCAACGGAAGCAGAACCCGGAG
ATGAGCGGATTCCGAACGAGCCATTCAACGTTGTCGGGCAAGATGATTCT
ATAATTGTCTCAGATGGGGAAGACAATGAAGAAGAGGTTGAAGAAGATCC
GGAAGGAATGGGTCACGAATTCTGGGGCCTGTTCTAA
back to top

Coding sequence (CDS) from alignment at tig00004433_pilon:278714..280150+

>Gchil1323.t1 ID=Gchil1323.t1|Name=Gchil1323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1437bp|location=Sequence derived from alignment at tig00004433_pilon:278714..280150+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCATCTCCGTGCCATTTTAAAACTCTTTCAAACTATCGAAGATGG
ACAACAAGGTATTCCCACCGCCGCTAGAATATCGAACAATTCATTTGTCA
TTATCAGTGCTCTCAGCAGCGGCATCATAGATGTTTACACCCGCCCTTGT
ATCACTGCCAAATTTGCCAAGTCGGAAACTTCTTACCTCAAACACCAAAA
AAAAAAATCACAGGTAACTGCACTTGCTCTTCAAGACGGAGGTGCCCAGG
CAGTCTCAGGAGATGACCAAGGCTTTCTGCATGTCTGGCTAACCAACGAC
CCGACAAAGTGCACTTGGCGGCAGTGCGGTTATGGTCCAGTTGTGGATGT
GGCGATCAGCAATCGCTACATTTTAGCCAGTTTCAAAGGCATCGATGAAA
AGGATGGCTGTATGTTGTTGTTGAATAAGGGCCTCAATATCGAAGACGAT
TGGGAAAAAGTCAAGGTGTATAAGCCGGGCAGGTACACTAAATGCGCACT
GTCTGAGATATTAAAGCTGAAAGAACTAAACGTCGTGTATTACTTGAACA
AATCTCTCATCTACGAGAAGAATCCGCAGGACGCAGATGACCAGCCATTC
AGTTCGTTGGAAGTAACGAAACCGTTTTTCGTGTGCCGAAATCCGGCGTG
CCTGACAACAATGGTGTTTGCAGCATTGGTTCAGCGACAGTTGATGCTTT
GGGATCCAAAACGTCCAGCAGTGGATGGCAAAAATCCCTTCTATTTCAAC
CTTAAGTCATCGGAGCCGGTCGCGTTTAACAAAACGTCTTCTATCTCTTC
TGTCTGCGATGGTCACATGTTTATTCTCACCATCCTCGAAAACACGTTGT
CTGTAGTTACATTGGAGAAAGAAATCAAGCCAAAGCCAAAAGGTCCGATA
ACATATGAAGAAAAGGATAACCCTACTAAACATACAGTTTTTCATGCAGT
AAGGGAACTGGTTAATGGAAACCCAGAACCAGTGGATAGAATCATGGCGG
AAGTCGACGGTACAGATACAACGGAGATGACCTCGAACTCGAGAACAGCA
ATAATCGGGGAAGAAACTCCCGATAGAATCTCGGAAACGCCACCGAATTC
CAAAGCGGATAACGAATCTAGTATTCCACCAGATACACCTTCAGTCCCTG
TGCGCGTTGTCTTGAAGGATGAAACCCCCGAGATGGATAGAAGTAATGTA
CCGTCAGATTCCCCGAGCGAAAGACAAGAAGTAGATGTAGAACCCAAAGA
AGTCGCAGGTAACAATGCCACCCCCACTGCAACGGAAGCAGAACCCGGAG
ATGAGCGGATTCCGAACGAGCCATTCAACGTTGTCGGGCAAGATGATTCT
ATAATTGTCTCAGATGGGGAAGACAATGAAGAAGAGGTTGAAGAAGATCC
GGAAGGAATGGGTCACGAATTCTGGGGCCTGTTCTAA
back to top