Gchil1322.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1322.t1
Unique NameGchil1322.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length503
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004433_piloncontigtig00004433_pilon:276090..277598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog710111.FraQA3DRAFT_2346
PFAMsNB-ARC
Max annot lvl2|Bacteria
Evalue7.35e-08
EggNOG OGsCOG0515@1|root,COG1413@1|root,COG0515@2|Bacteria,COG1413@2|Bacteria
Descriptiondeoxyhypusine monooxygenase activity
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1322Gchil1322Gracilaria chilensis NLEC103_M9 malegenetig00004433_pilon 276090..277598 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1322.t1.stop1Gchil1322.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004433_pilon 276090..276092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1322.t1.CDS1Gchil1322.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004433_pilon 276090..277598 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1322.t1.exon1Gchil1322.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004433_pilon 276090..277598 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1322.t1.start1Gchil1322.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004433_pilon 277596..277598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1322.t1Gchil1322.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004433_pilon 276090..277598 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1322.t1 ID=Gchil1322.t1|Name=Gchil1322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=503bp
MDIGQASSSTAPNNEDSKPFARPRLKRRRLAYARPAFIAVRENPVHYILG
FSESLNRIERSVCNLVISGKRSVAVVGLPGCGKTVILRGLAYHFEIHSVF
RDGICLVHLGPEATVDATFNNLFEVMRRLGGAAPAKRIEAVLQRKLDYDE
CIQSIQRFLKDKSFLLILDNVCESTPKVLHILSILTMRKYARALGRMSVL
TSTRSVRIARTFAGASVVQVQLRRPLDDVSRDIFCAHSALTRSYIDSICV
KKDYPTRFILERCSGMPLVLAVVGGAMKRLLSETKTEEDRDAMWRQYQNY
LSNNFDQFGEICGFFKMMDACVRDISSRSWYVSITARDAICSLALFQKGV
WVPIVILQRLWGLDKKEEAMIVVQSLARLCLVLQDMRNGMVGISIPGIVL
DYCCHEAKQGKGIRIWHQRLLNSFLMTTANGFTDGKSLSNHTKMQRSAEE
EEYLRENVGYHLSQILSVSEGGSETNPSFTEAASRFFRNHLRDDVNGSAQ
IT*
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spliced messenger RNA

>Gchil1322.t1 ID=Gchil1322.t1|Name=Gchil1322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00004433_pilon:276090..277598- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATAGGACAAGCTAGTTCATCCACAGCACCCAACAACGAAGACTC
AAAACCTTTTGCAAGACCGCGTTTGAAACGAAGACGTTTGGCATATGCTC
GACCAGCTTTCATCGCCGTTCGTGAGAATCCAGTGCACTATATTCTTGGT
TTTTCTGAGTCGCTCAACAGGATCGAGCGTAGTGTTTGTAATCTCGTTAT
CTCCGGCAAACGCTCCGTGGCCGTGGTGGGTTTGCCTGGGTGTGGGAAAA
CTGTCATTCTGCGTGGACTAGCGTACCACTTTGAAATTCATTCCGTGTTT
CGTGATGGAATATGTCTTGTTCACTTGGGTCCAGAGGCCACTGTCGACGC
CACTTTCAATAATCTTTTCGAAGTCATGCGCCGACTTGGTGGCGCGGCGC
CTGCAAAGAGAATTGAGGCTGTACTTCAGCGCAAACTTGATTATGACGAA
TGTATTCAGTCCATTCAGCGCTTTTTAAAGGATAAATCTTTCTTGCTTAT
CCTAGATAACGTCTGCGAAAGCACGCCAAAAGTTCTGCATATCTTATCCA
TTCTAACTATGCGTAAATACGCAAGAGCTCTGGGTCGTATGAGCGTCTTA
ACTTCCACTCGCAGTGTCCGGATTGCTCGTACTTTTGCTGGCGCATCCGT
GGTGCAGGTCCAGCTTCGCAGACCTTTAGACGACGTCTCTCGTGATATAT
TTTGCGCACATTCGGCCTTAACTCGTTCATACATCGATTCGATTTGCGTC
AAGAAGGATTACCCTACCAGATTCATCTTGGAGAGATGTTCAGGTATGCC
TCTCGTTCTCGCAGTAGTTGGTGGTGCAATGAAACGACTATTAAGCGAAA
CCAAAACGGAAGAAGACCGCGACGCCATGTGGCGTCAGTATCAGAATTAT
TTGTCGAACAACTTTGATCAGTTCGGTGAGATATGTGGCTTTTTCAAAAT
GATGGATGCATGTGTGCGTGACATATCTTCGCGAAGCTGGTACGTGAGCA
TCACGGCACGTGACGCCATATGCTCTCTTGCATTGTTTCAGAAAGGCGTC
TGGGTGCCCATCGTTATTCTTCAAAGATTATGGGGGCTGGACAAGAAGGA
GGAAGCAATGATAGTAGTCCAATCTCTAGCGAGGCTGTGTCTTGTACTAC
AGGACATGAGAAACGGCATGGTTGGGATATCAATTCCAGGTATCGTGTTA
GATTATTGTTGTCACGAAGCCAAACAAGGAAAAGGAATTAGAATATGGCA
TCAGAGGCTGCTAAATTCCTTCTTAATGACAACAGCAAACGGTTTCACTG
ATGGAAAATCGCTTTCAAATCACACAAAAATGCAACGAAGTGCGGAAGAA
GAAGAATACCTGAGAGAAAATGTCGGGTACCACCTGTCACAGATACTAAG
TGTATCCGAAGGAGGATCGGAAACGAATCCTTCATTTACTGAAGCCGCTT
CAAGATTCTTCCGCAATCATCTACGTGACGATGTGAACGGATCAGCGCAG
ATCACATAG
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protein sequence of Gchil1322.t1

>Gchil1322.t1 ID=Gchil1322.t1|Name=Gchil1322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=503bp
MDIGQASSSTAPNNEDSKPFARPRLKRRRLAYARPAFIAVRENPVHYILG
FSESLNRIERSVCNLVISGKRSVAVVGLPGCGKTVILRGLAYHFEIHSVF
RDGICLVHLGPEATVDATFNNLFEVMRRLGGAAPAKRIEAVLQRKLDYDE
CIQSIQRFLKDKSFLLILDNVCESTPKVLHILSILTMRKYARALGRMSVL
TSTRSVRIARTFAGASVVQVQLRRPLDDVSRDIFCAHSALTRSYIDSICV
KKDYPTRFILERCSGMPLVLAVVGGAMKRLLSETKTEEDRDAMWRQYQNY
LSNNFDQFGEICGFFKMMDACVRDISSRSWYVSITARDAICSLALFQKGV
WVPIVILQRLWGLDKKEEAMIVVQSLARLCLVLQDMRNGMVGISIPGIVL
DYCCHEAKQGKGIRIWHQRLLNSFLMTTANGFTDGKSLSNHTKMQRSAEE
EEYLRENVGYHLSQILSVSEGGSETNPSFTEAASRFFRNHLRDDVNGSAQ
IT*
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mRNA from alignment at tig00004433_pilon:276090..277598-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1322.t1 ID=Gchil1322.t1|Name=Gchil1322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00004433_pilon:276090..277598- (Gracilaria chilensis NLEC103_M9 male)
ATGGACATAGGACAAGCTAGTTCATCCACAGCACCCAACAACGAAGACTC
AAAACCTTTTGCAAGACCGCGTTTGAAACGAAGACGTTTGGCATATGCTC
GACCAGCTTTCATCGCCGTTCGTGAGAATCCAGTGCACTATATTCTTGGT
TTTTCTGAGTCGCTCAACAGGATCGAGCGTAGTGTTTGTAATCTCGTTAT
CTCCGGCAAACGCTCCGTGGCCGTGGTGGGTTTGCCTGGGTGTGGGAAAA
CTGTCATTCTGCGTGGACTAGCGTACCACTTTGAAATTCATTCCGTGTTT
CGTGATGGAATATGTCTTGTTCACTTGGGTCCAGAGGCCACTGTCGACGC
CACTTTCAATAATCTTTTCGAAGTCATGCGCCGACTTGGTGGCGCGGCGC
CTGCAAAGAGAATTGAGGCTGTACTTCAGCGCAAACTTGATTATGACGAA
TGTATTCAGTCCATTCAGCGCTTTTTAAAGGATAAATCTTTCTTGCTTAT
CCTAGATAACGTCTGCGAAAGCACGCCAAAAGTTCTGCATATCTTATCCA
TTCTAACTATGCGTAAATACGCAAGAGCTCTGGGTCGTATGAGCGTCTTA
ACTTCCACTCGCAGTGTCCGGATTGCTCGTACTTTTGCTGGCGCATCCGT
GGTGCAGGTCCAGCTTCGCAGACCTTTAGACGACGTCTCTCGTGATATAT
TTTGCGCACATTCGGCCTTAACTCGTTCATACATCGATTCGATTTGCGTC
AAGAAGGATTACCCTACCAGATTCATCTTGGAGAGATGTTCAGGTATGCC
TCTCGTTCTCGCAGTAGTTGGTGGTGCAATGAAACGACTATTAAGCGAAA
CCAAAACGGAAGAAGACCGCGACGCCATGTGGCGTCAGTATCAGAATTAT
TTGTCGAACAACTTTGATCAGTTCGGTGAGATATGTGGCTTTTTCAAAAT
GATGGATGCATGTGTGCGTGACATATCTTCGCGAAGCTGGTACGTGAGCA
TCACGGCACGTGACGCCATATGCTCTCTTGCATTGTTTCAGAAAGGCGTC
TGGGTGCCCATCGTTATTCTTCAAAGATTATGGGGGCTGGACAAGAAGGA
GGAAGCAATGATAGTAGTCCAATCTCTAGCGAGGCTGTGTCTTGTACTAC
AGGACATGAGAAACGGCATGGTTGGGATATCAATTCCAGGTATCGTGTTA
GATTATTGTTGTCACGAAGCCAAACAAGGAAAAGGAATTAGAATATGGCA
TCAGAGGCTGCTAAATTCCTTCTTAATGACAACAGCAAACGGTTTCACTG
ATGGAAAATCGCTTTCAAATCACACAAAAATGCAACGAAGTGCGGAAGAA
GAAGAATACCTGAGAGAAAATGTCGGGTACCACCTGTCACAGATACTAAG
TGTATCCGAAGGAGGATCGGAAACGAATCCTTCATTTACTGAAGCCGCTT
CAAGATTCTTCCGCAATCATCTACGTGACGATGTGAACGGATCAGCGCAG
ATCACATAG
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Coding sequence (CDS) from alignment at tig00004433_pilon:276090..277598-

>Gchil1322.t1 ID=Gchil1322.t1|Name=Gchil1322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1509bp|location=Sequence derived from alignment at tig00004433_pilon:276090..277598- (Gracilaria chilensis NLEC103_M9 male)
ATGGACATAGGACAAGCTAGTTCATCCACAGCACCCAACAACGAAGACTC
AAAACCTTTTGCAAGACCGCGTTTGAAACGAAGACGTTTGGCATATGCTC
GACCAGCTTTCATCGCCGTTCGTGAGAATCCAGTGCACTATATTCTTGGT
TTTTCTGAGTCGCTCAACAGGATCGAGCGTAGTGTTTGTAATCTCGTTAT
CTCCGGCAAACGCTCCGTGGCCGTGGTGGGTTTGCCTGGGTGTGGGAAAA
CTGTCATTCTGCGTGGACTAGCGTACCACTTTGAAATTCATTCCGTGTTT
CGTGATGGAATATGTCTTGTTCACTTGGGTCCAGAGGCCACTGTCGACGC
CACTTTCAATAATCTTTTCGAAGTCATGCGCCGACTTGGTGGCGCGGCGC
CTGCAAAGAGAATTGAGGCTGTACTTCAGCGCAAACTTGATTATGACGAA
TGTATTCAGTCCATTCAGCGCTTTTTAAAGGATAAATCTTTCTTGCTTAT
CCTAGATAACGTCTGCGAAAGCACGCCAAAAGTTCTGCATATCTTATCCA
TTCTAACTATGCGTAAATACGCAAGAGCTCTGGGTCGTATGAGCGTCTTA
ACTTCCACTCGCAGTGTCCGGATTGCTCGTACTTTTGCTGGCGCATCCGT
GGTGCAGGTCCAGCTTCGCAGACCTTTAGACGACGTCTCTCGTGATATAT
TTTGCGCACATTCGGCCTTAACTCGTTCATACATCGATTCGATTTGCGTC
AAGAAGGATTACCCTACCAGATTCATCTTGGAGAGATGTTCAGGTATGCC
TCTCGTTCTCGCAGTAGTTGGTGGTGCAATGAAACGACTATTAAGCGAAA
CCAAAACGGAAGAAGACCGCGACGCCATGTGGCGTCAGTATCAGAATTAT
TTGTCGAACAACTTTGATCAGTTCGGTGAGATATGTGGCTTTTTCAAAAT
GATGGATGCATGTGTGCGTGACATATCTTCGCGAAGCTGGTACGTGAGCA
TCACGGCACGTGACGCCATATGCTCTCTTGCATTGTTTCAGAAAGGCGTC
TGGGTGCCCATCGTTATTCTTCAAAGATTATGGGGGCTGGACAAGAAGGA
GGAAGCAATGATAGTAGTCCAATCTCTAGCGAGGCTGTGTCTTGTACTAC
AGGACATGAGAAACGGCATGGTTGGGATATCAATTCCAGGTATCGTGTTA
GATTATTGTTGTCACGAAGCCAAACAAGGAAAAGGAATTAGAATATGGCA
TCAGAGGCTGCTAAATTCCTTCTTAATGACAACAGCAAACGGTTTCACTG
ATGGAAAATCGCTTTCAAATCACACAAAAATGCAACGAAGTGCGGAAGAA
GAAGAATACCTGAGAGAAAATGTCGGGTACCACCTGTCACAGATACTAAG
TGTATCCGAAGGAGGATCGGAAACGAATCCTTCATTTACTGAAGCCGCTT
CAAGATTCTTCCGCAATCATCTACGTGACGATGTGAACGGATCAGCGCAG
ATCACATAG
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