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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005706631.1 |
| Preferred name | RAD4 |
| PFAMs | BHD_1,BHD_2,BHD_3,Rad4,Transglut_core |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K10838 |
| KEGG Pathway | ko03420,map03420 |
| GOs | GO:0000109,GO:0000111,GO:0000217,GO:0000404,GO:0000405,GO:0000715,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007346,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0010564,GO:0016020,GO:0016043,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0032135,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034644,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051716,GO:0051726,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0071944,GO:0090304,GO:0097159,GO:0104004,GO:1901360,GO:1901363,GO:1901987,GO:1901990,GO:1990391 |
| Evalue | 7.01e-47 |
| EggNOG OGs | COG5535@1|root,KOG2179@2759|Eukaryota |
| Description | mismatch repair |
| COG category | L |
| BRITE | ko00000,ko00001,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil1284.t1 ID=Gchil1284.t1|Name=Gchil1284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=815bp MGQRAAPDASVGRGPKAVETKRICVRLVRLVQPPATMSDAEPPATLNGLS QSAVSHALTRAHKRKRARYNNVAPADSAPPLLVQQRASGASVPYQKRRRT SLIPLPNGSDDGDSNDEWEEHVHVDQRAVHAASASASVPPPSAAAAAAAP SGGHDARVPQPVDDGAPRQSQLTELQKSKLRRKMGAQLRRSRLRVHAVHL LLLAAHMLRQDCAANDSLCRAVALSLLPHDAFLSADRLKQRLARFALWMR STFHAAVLVSHPAQVRAQSVFRRACSASERIVHSARVGRGDIIDIASLAC ALVRAQNFRCRLVLALQPVPFRIKQGNKEQKLSARRNVVCARANDVTESA LYAWTEVWSQEHAAWIVVDVFSGQVHQGYSRDIIDIGLLRIPVFDSQFMQ STDCAEGTTNPKRRSSRRQSTRRKKQTRDEPIRNVGEQYYSHVVAVENGR LTDVSRRYVRNWLQAEDYRAKGKLFENVLGNLSVSVGTGSDEALKKEVEE FESLTAEETVPSTMTAIQKHPRYVLERHIKRYELIWPREPIAGHIKNEPV FLRANVRLLHTKDRWMRQMREVKQNEKPMKSVKSKNGTDAQVQLYGEWQT QALKIAACKDGKVPRSMHGNVDLWTAEHLPPGAEHVNVPHAKAAAKKIGV DFAPAMTGFDIRGGRSIPRIEGVVVAAENAALVRDGAREMQRAARERAER RASEEAVAKWAKLVRALVVRHKVKKKYGGVGGASYESEQKRRGREKAARE KSGMRGAAGDGQRSVSMRTRGAARKAKLMSTEHEHTFDDGVHVEGDRWLK KCKVCELEVWYERL* back to topspliced messenger RNA >Gchil1284.t1 ID=Gchil1284.t1|Name=Gchil1284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2445bp|location=Sequence derived from alignment at tig00004433_pilon:36973..39417- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGGCAGCGGGCAGCGCCAGACGCCTCCGTCGGGCGCGGACCGAAAGC TGTCGAAACGAAGCGAATCTGCGTACGTTTGGTACGTTTGGTACAGCCGC CCGCCACCATGAGCGACGCCGAGCCGCCCGCAACGCTCAACGGGCTCTCG CAGAGCGCGGTAAGCCACGCCCTCACTCGCGCACACAAGCGAAAGCGCGC CCGTTACAACAACGTCGCACCCGCCGACTCCGCCCCGCCGCTGCTCGTCC AGCAGCGCGCGTCCGGCGCGAGCGTGCCGTACCAAAAGCGCCGCCGCACA TCGCTCATTCCGCTGCCCAATGGCTCCGACGACGGCGACTCCAACGACGA GTGGGAGGAGCACGTCCACGTGGACCAGCGCGCCGTCCACGCCGCCAGCG CCTCTGCTTCCGTGCCCCCCCCTTCCGCCGCCGCCGCCGCCGCCGCTCCG TCGGGCGGCCATGATGCGCGCGTGCCGCAGCCCGTCGACGATGGCGCGCC GCGACAGTCGCAGCTCACCGAGCTGCAAAAGAGCAAGCTGCGCCGGAAGA TGGGCGCCCAGCTCAGACGCTCTCGCCTTCGCGTGCACGCCGTGCATCTG CTTTTGCTTGCGGCGCACATGTTGCGCCAGGATTGTGCGGCCAATGATTC GTTGTGTCGAGCGGTTGCGCTCAGTCTTTTGCCTCACGATGCGTTCCTCA GTGCCGATCGTCTCAAACAGCGATTGGCACGCTTTGCGTTGTGGATGCGC TCCACCTTTCACGCCGCAGTTCTTGTGTCGCACCCGGCGCAAGTGCGCGC GCAGAGCGTGTTCAGACGAGCTTGCAGCGCGTCAGAGAGAATTGTTCACA GTGCTCGCGTCGGAAGGGGCGATATCATAGACATTGCCTCCCTGGCGTGC GCCCTTGTTCGCGCACAGAACTTTCGATGTAGGCTTGTGTTGGCACTGCA GCCCGTTCCATTTCGCATCAAGCAAGGAAACAAGGAACAAAAGCTCAGTG CGAGACGCAACGTGGTCTGTGCGCGTGCAAATGATGTCACAGAAAGCGCT TTGTATGCCTGGACGGAGGTGTGGTCGCAGGAGCATGCTGCATGGATTGT TGTCGACGTGTTCAGTGGCCAAGTTCACCAAGGATACTCACGAGACATAA TTGACATTGGTCTGCTTCGCATACCCGTGTTTGACTCCCAGTTTATGCAG TCTACAGACTGCGCCGAAGGCACTACCAACCCCAAGCGCCGAAGCTCTCG ACGCCAAAGCACTCGTCGCAAAAAGCAAACGCGTGATGAACCCATTCGCA ACGTGGGCGAACAATACTATTCGCATGTGGTCGCGGTTGAAAACGGCCGT CTCACCGACGTTTCTCGCCGCTACGTGAGGAATTGGCTGCAAGCTGAGGA TTACAGGGCAAAAGGGAAGCTGTTTGAAAACGTGCTTGGCAACCTGAGCG TGAGCGTTGGCACGGGAAGCGACGAGGCCTTGAAAAAAGAAGTAGAAGAG TTTGAGTCGCTTACGGCGGAAGAGACCGTACCTAGTACTATGACAGCGAT ACAAAAGCATCCAAGGTATGTCTTGGAGCGACATATAAAAAGATACGAGC TGATATGGCCCAGAGAACCCATTGCCGGGCATATAAAAAACGAGCCGGTG TTCTTGCGGGCAAACGTGAGGCTACTACACACTAAGGATCGATGGATGAG ACAAATGAGAGAAGTGAAGCAAAACGAAAAGCCAATGAAGTCGGTCAAGT CGAAAAATGGAACCGACGCGCAGGTGCAGTTGTACGGCGAGTGGCAGACA CAAGCTCTGAAGATCGCGGCATGCAAAGACGGAAAAGTACCGCGCAGCAT GCATGGCAACGTGGACCTCTGGACGGCGGAACATCTACCGCCAGGGGCCG AACACGTGAACGTTCCGCACGCGAAAGCGGCGGCGAAAAAGATAGGCGTG GACTTTGCGCCGGCTATGACGGGCTTTGACATTCGGGGCGGTAGGTCGAT TCCTCGCATTGAGGGGGTGGTGGTGGCGGCAGAAAACGCGGCGTTGGTGA GGGACGGGGCACGCGAAATGCAGCGGGCTGCGCGGGAACGGGCTGAGAGG CGGGCGAGTGAGGAGGCGGTGGCGAAGTGGGCCAAGCTGGTGCGCGCTTT GGTGGTGCGGCACAAAGTGAAGAAGAAGTACGGTGGGGTGGGTGGCGCTA GCTATGAGAGCGAGCAGAAGCGAAGAGGGCGGGAGAAGGCTGCGAGGGAG AAGAGCGGGATGCGTGGGGCGGCGGGCGATGGGCAGCGTTCGGTGAGCAT GCGTACTCGGGGGGCGGCGCGGAAGGCCAAGTTGATGAGCACGGAGCATG AACACACTTTTGACGATGGGGTGCATGTCGAGGGGGATAGATGGCTGAAG AAGTGCAAGGTTTGCGAGCTTGAGGTTTGGTACGAAAGGCTTTAG back to topprotein sequence of Gchil1284.t1 >Gchil1284.t1 ID=Gchil1284.t1|Name=Gchil1284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=815bp
MGQRAAPDASVGRGPKAVETKRICVRLVRLVQPPATMSDAEPPATLNGLS QSAVSHALTRAHKRKRARYNNVAPADSAPPLLVQQRASGASVPYQKRRRT SLIPLPNGSDDGDSNDEWEEHVHVDQRAVHAASASASVPPPSAAAAAAAP SGGHDARVPQPVDDGAPRQSQLTELQKSKLRRKMGAQLRRSRLRVHAVHL LLLAAHMLRQDCAANDSLCRAVALSLLPHDAFLSADRLKQRLARFALWMR STFHAAVLVSHPAQVRAQSVFRRACSASERIVHSARVGRGDIIDIASLAC ALVRAQNFRCRLVLALQPVPFRIKQGNKEQKLSARRNVVCARANDVTESA LYAWTEVWSQEHAAWIVVDVFSGQVHQGYSRDIIDIGLLRIPVFDSQFMQ STDCAEGTTNPKRRSSRRQSTRRKKQTRDEPIRNVGEQYYSHVVAVENGR LTDVSRRYVRNWLQAEDYRAKGKLFENVLGNLSVSVGTGSDEALKKEVEE FESLTAEETVPSTMTAIQKHPRYVLERHIKRYELIWPREPIAGHIKNEPV FLRANVRLLHTKDRWMRQMREVKQNEKPMKSVKSKNGTDAQVQLYGEWQT QALKIAACKDGKVPRSMHGNVDLWTAEHLPPGAEHVNVPHAKAAAKKIGV DFAPAMTGFDIRGGRSIPRIEGVVVAAENAALVRDGAREMQRAARERAER RASEEAVAKWAKLVRALVVRHKVKKKYGGVGGASYESEQKRRGREKAARE KSGMRGAAGDGQRSVSMRTRGAARKAKLMSTEHEHTFDDGVHVEGDRWLK KCKVCELEVWYERL* back to topmRNA from alignment at tig00004433_pilon:36973..39417- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil1284.t1 ID=Gchil1284.t1|Name=Gchil1284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2445bp|location=Sequence derived from alignment at tig00004433_pilon:36973..39417- (Gracilaria chilensis NLEC103_M9 male) ATGGGGCAGCGGGCAGCGCCAGACGCCTCCGTCGGGCGCGGACCGAAAGC
TGTCGAAACGAAGCGAATCTGCGTACGTTTGGTACGTTTGGTACAGCCGC
CCGCCACCATGAGCGACGCCGAGCCGCCCGCAACGCTCAACGGGCTCTCG
CAGAGCGCGGTAAGCCACGCCCTCACTCGCGCACACAAGCGAAAGCGCGC
CCGTTACAACAACGTCGCACCCGCCGACTCCGCCCCGCCGCTGCTCGTCC
AGCAGCGCGCGTCCGGCGCGAGCGTGCCGTACCAAAAGCGCCGCCGCACA
TCGCTCATTCCGCTGCCCAATGGCTCCGACGACGGCGACTCCAACGACGA
GTGGGAGGAGCACGTCCACGTGGACCAGCGCGCCGTCCACGCCGCCAGCG
CCTCTGCTTCCGTGCCCCCCCCTTCCGCCGCCGCCGCCGCCGCCGCTCCG
TCGGGCGGCCATGATGCGCGCGTGCCGCAGCCCGTCGACGATGGCGCGCC
GCGACAGTCGCAGCTCACCGAGCTGCAAAAGAGCAAGCTGCGCCGGAAGA
TGGGCGCCCAGCTCAGACGCTCTCGCCTTCGCGTGCACGCCGTGCATCTG
CTTTTGCTTGCGGCGCACATGTTGCGCCAGGATTGTGCGGCCAATGATTC
GTTGTGTCGAGCGGTTGCGCTCAGTCTTTTGCCTCACGATGCGTTCCTCA
GTGCCGATCGTCTCAAACAGCGATTGGCACGCTTTGCGTTGTGGATGCGC
TCCACCTTTCACGCCGCAGTTCTTGTGTCGCACCCGGCGCAAGTGCGCGC
GCAGAGCGTGTTCAGACGAGCTTGCAGCGCGTCAGAGAGAATTGTTCACA
GTGCTCGCGTCGGAAGGGGCGATATCATAGACATTGCCTCCCTGGCGTGC
GCCCTTGTTCGCGCACAGAACTTTCGATGTAGGCTTGTGTTGGCACTGCA
GCCCGTTCCATTTCGCATCAAGCAAGGAAACAAGGAACAAAAGCTCAGTG
CGAGACGCAACGTGGTCTGTGCGCGTGCAAATGATGTCACAGAAAGCGCT
TTGTATGCCTGGACGGAGGTGTGGTCGCAGGAGCATGCTGCATGGATTGT
TGTCGACGTGTTCAGTGGCCAAGTTCACCAAGGATACTCACGAGACATAA
TTGACATTGGTCTGCTTCGCATACCCGTGTTTGACTCCCAGTTTATGCAG
TCTACAGACTGCGCCGAAGGCACTACCAACCCCAAGCGCCGAAGCTCTCG
ACGCCAAAGCACTCGTCGCAAAAAGCAAACGCGTGATGAACCCATTCGCA
ACGTGGGCGAACAATACTATTCGCATGTGGTCGCGGTTGAAAACGGCCGT
CTCACCGACGTTTCTCGCCGCTACGTGAGGAATTGGCTGCAAGCTGAGGA
TTACAGGGCAAAAGGGAAGCTGTTTGAAAACGTGCTTGGCAACCTGAGCG
TGAGCGTTGGCACGGGAAGCGACGAGGCCTTGAAAAAAGAAGTAGAAGAG
TTTGAGTCGCTTACGGCGGAAGAGACCGTACCTAGTACTATGACAGCGAT
ACAAAAGCATCCAAGGTATGTCTTGGAGCGACATATAAAAAGATACGAGC
TGATATGGCCCAGAGAACCCATTGCCGGGCATATAAAAAACGAGCCGGTG
TTCTTGCGGGCAAACGTGAGGCTACTACACACTAAGGATCGATGGATGAG
ACAAATGAGAGAAGTGAAGCAAAACGAAAAGCCAATGAAGTCGGTCAAGT
CGAAAAATGGAACCGACGCGCAGGTGCAGTTGTACGGCGAGTGGCAGACA
CAAGCTCTGAAGATCGCGGCATGCAAAGACGGAAAAGTACCGCGCAGCAT
GCATGGCAACGTGGACCTCTGGACGGCGGAACATCTACCGCCAGGGGCCG
AACACGTGAACGTTCCGCACGCGAAAGCGGCGGCGAAAAAGATAGGCGTG
GACTTTGCGCCGGCTATGACGGGCTTTGACATTCGGGGCGGTAGGTCGAT
TCCTCGCATTGAGGGGGTGGTGGTGGCGGCAGAAAACGCGGCGTTGGTGA
GGGACGGGGCACGCGAAATGCAGCGGGCTGCGCGGGAACGGGCTGAGAGG
CGGGCGAGTGAGGAGGCGGTGGCGAAGTGGGCCAAGCTGGTGCGCGCTTT
GGTGGTGCGGCACAAAGTGAAGAAGAAGTACGGTGGGGTGGGTGGCGCTA
GCTATGAGAGCGAGCAGAAGCGAAGAGGGCGGGAGAAGGCTGCGAGGGAG
AAGAGCGGGATGCGTGGGGCGGCGGGCGATGGGCAGCGTTCGGTGAGCAT
GCGTACTCGGGGGGCGGCGCGGAAGGCCAAGTTGATGAGCACGGAGCATG
AACACACTTTTGACGATGGGGTGCATGTCGAGGGGGATAGATGGCTGAAG
AAGTGCAAGGTTTGCGAGCTTGAGGTTTGGTACGAAAGGCTTTAG back to topCoding sequence (CDS) from alignment at tig00004433_pilon:36973..39417- >Gchil1284.t1 ID=Gchil1284.t1|Name=Gchil1284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2445bp|location=Sequence derived from alignment at tig00004433_pilon:36973..39417- (Gracilaria chilensis NLEC103_M9 male) ATGGGGCAGCGGGCAGCGCCAGACGCCTCCGTCGGGCGCGGACCGAAAGC TGTCGAAACGAAGCGAATCTGCGTACGTTTGGTACGTTTGGTACAGCCGC CCGCCACCATGAGCGACGCCGAGCCGCCCGCAACGCTCAACGGGCTCTCG CAGAGCGCGGTAAGCCACGCCCTCACTCGCGCACACAAGCGAAAGCGCGC CCGTTACAACAACGTCGCACCCGCCGACTCCGCCCCGCCGCTGCTCGTCC AGCAGCGCGCGTCCGGCGCGAGCGTGCCGTACCAAAAGCGCCGCCGCACA TCGCTCATTCCGCTGCCCAATGGCTCCGACGACGGCGACTCCAACGACGA GTGGGAGGAGCACGTCCACGTGGACCAGCGCGCCGTCCACGCCGCCAGCG CCTCTGCTTCCGTGCCCCCCCCTTCCGCCGCCGCCGCCGCCGCCGCTCCG TCGGGCGGCCATGATGCGCGCGTGCCGCAGCCCGTCGACGATGGCGCGCC GCGACAGTCGCAGCTCACCGAGCTGCAAAAGAGCAAGCTGCGCCGGAAGA TGGGCGCCCAGCTCAGACGCTCTCGCCTTCGCGTGCACGCCGTGCATCTG CTTTTGCTTGCGGCGCACATGTTGCGCCAGGATTGTGCGGCCAATGATTC GTTGTGTCGAGCGGTTGCGCTCAGTCTTTTGCCTCACGATGCGTTCCTCA GTGCCGATCGTCTCAAACAGCGATTGGCACGCTTTGCGTTGTGGATGCGC TCCACCTTTCACGCCGCAGTTCTTGTGTCGCACCCGGCGCAAGTGCGCGC GCAGAGCGTGTTCAGACGAGCTTGCAGCGCGTCAGAGAGAATTGTTCACA GTGCTCGCGTCGGAAGGGGCGATATCATAGACATTGCCTCCCTGGCGTGC GCCCTTGTTCGCGCACAGAACTTTCGATGTAGGCTTGTGTTGGCACTGCA GCCCGTTCCATTTCGCATCAAGCAAGGAAACAAGGAACAAAAGCTCAGTG CGAGACGCAACGTGGTCTGTGCGCGTGCAAATGATGTCACAGAAAGCGCT TTGTATGCCTGGACGGAGGTGTGGTCGCAGGAGCATGCTGCATGGATTGT TGTCGACGTGTTCAGTGGCCAAGTTCACCAAGGATACTCACGAGACATAA TTGACATTGGTCTGCTTCGCATACCCGTGTTTGACTCCCAGTTTATGCAG TCTACAGACTGCGCCGAAGGCACTACCAACCCCAAGCGCCGAAGCTCTCG ACGCCAAAGCACTCGTCGCAAAAAGCAAACGCGTGATGAACCCATTCGCA ACGTGGGCGAACAATACTATTCGCATGTGGTCGCGGTTGAAAACGGCCGT CTCACCGACGTTTCTCGCCGCTACGTGAGGAATTGGCTGCAAGCTGAGGA TTACAGGGCAAAAGGGAAGCTGTTTGAAAACGTGCTTGGCAACCTGAGCG TGAGCGTTGGCACGGGAAGCGACGAGGCCTTGAAAAAAGAAGTAGAAGAG TTTGAGTCGCTTACGGCGGAAGAGACCGTACCTAGTACTATGACAGCGAT ACAAAAGCATCCAAGGTATGTCTTGGAGCGACATATAAAAAGATACGAGC TGATATGGCCCAGAGAACCCATTGCCGGGCATATAAAAAACGAGCCGGTG TTCTTGCGGGCAAACGTGAGGCTACTACACACTAAGGATCGATGGATGAG ACAAATGAGAGAAGTGAAGCAAAACGAAAAGCCAATGAAGTCGGTCAAGT CGAAAAATGGAACCGACGCGCAGGTGCAGTTGTACGGCGAGTGGCAGACA CAAGCTCTGAAGATCGCGGCATGCAAAGACGGAAAAGTACCGCGCAGCAT GCATGGCAACGTGGACCTCTGGACGGCGGAACATCTACCGCCAGGGGCCG AACACGTGAACGTTCCGCACGCGAAAGCGGCGGCGAAAAAGATAGGCGTG GACTTTGCGCCGGCTATGACGGGCTTTGACATTCGGGGCGGTAGGTCGAT TCCTCGCATTGAGGGGGTGGTGGTGGCGGCAGAAAACGCGGCGTTGGTGA GGGACGGGGCACGCGAAATGCAGCGGGCTGCGCGGGAACGGGCTGAGAGG CGGGCGAGTGAGGAGGCGGTGGCGAAGTGGGCCAAGCTGGTGCGCGCTTT GGTGGTGCGGCACAAAGTGAAGAAGAAGTACGGTGGGGTGGGTGGCGCTA GCTATGAGAGCGAGCAGAAGCGAAGAGGGCGGGAGAAGGCTGCGAGGGAG AAGAGCGGGATGCGTGGGGCGGCGGGCGATGGGCAGCGTTCGGTGAGCAT GCGTACTCGGGGGGCGGCGCGGAAGGCCAAGTTGATGAGCACGGAGCATG AACACACTTTTGACGATGGGGTGCATGTCGAGGGGGATAGATGGCTGAAG AAGTGCAAGGTTTGCGAGCTTGAGGTTTGGTACGAAAGGCTTTAG back to top
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