Gchil1259.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1259.t1
Unique NameGchil1259.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:817744..818337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ198CT
PFAMsPRA1
Max annot lvl2759|Eukaryota
KEGG rclassRC02078
KEGG koko:K12638,ko:K19496,ko:K20359
KEGG TC1.A.17.1.1,1.A.17.1.22,9.A.49.1
KEGG ReactionR07431,R07448,R07786,R07787,R07791,R07792
KEGG Pathwayko00905,ko01100,ko01110,map00905,map01100,map01110
KEGG ModuleM00371
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016032,GO:0016192,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0040011,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044000,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0046739,GO:0046794,GO:0051179,GO:0051234,GO:0051701,GO:0051704,GO:0051814,GO:0052126,GO:0052192,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1902579
Evalue1.42e-07
EggNOG OGsKOG3142@1|root,KOG3142@2759|Eukaryota
EC1.14.13.112
Descriptionvesicle-mediated transport
COG categoryU
BRITEko00000,ko00001,ko00002,ko00199,ko01000,ko02000,ko04040,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1259Gchil1259Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 817744..818337 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1259.t1.start1Gchil1259.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 817744..817746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1259.t1.CDS1Gchil1259.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 817744..818337 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1259.t1.exon1Gchil1259.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 817744..818337 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1259.t1.stop1Gchil1259.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 818335..818337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1259.t1Gchil1259.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 817744..818337 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1259.t1 ID=Gchil1259.t1|Name=Gchil1259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=198bp
MSYGSAADEERSLAYAESKPMPSADASKSRATAAASDVQLNNVGEAPQHL
SPTADRLVTCGRNTWRDCRPWPEFYSTRALSVPQFAALSERVAKNLHVYR
ANYTVLVAFWFVLMLLGSIPSVIIAALLFFAVERWAARRNGLSPRDKVVV
AFLVLLVIWLTDIGRYAITSLLFSCLSVALHATFHETDVVETEIATV*
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spliced messenger RNA

>Gchil1259.t1 ID=Gchil1259.t1|Name=Gchil1259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00004437_pilon:817744..818337+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTACGGCTCAGCCGCTGACGAGGAGCGCTCGCTTGCATACGCCGA
ATCTAAGCCAATGCCTTCCGCAGATGCCAGCAAGTCGCGTGCGACTGCCG
CCGCGTCCGACGTTCAGTTGAACAACGTCGGTGAGGCGCCGCAGCACCTC
TCTCCCACCGCCGATCGCCTCGTCACCTGCGGGCGTAATACATGGCGAGA
TTGCCGCCCATGGCCCGAGTTCTACTCCACGCGCGCTCTGTCGGTGCCGC
AGTTTGCGGCTCTCAGCGAAAGAGTTGCCAAGAATCTTCATGTGTATCGT
GCAAACTACACTGTGCTCGTTGCGTTCTGGTTTGTCCTTATGTTGCTTGG
CTCCATTCCGAGCGTTATTATCGCTGCGCTCCTGTTTTTCGCTGTTGAGC
GATGGGCTGCTCGACGGAACGGTCTTTCGCCACGGGACAAGGTGGTCGTC
GCTTTCTTGGTTTTGCTTGTTATCTGGCTCACTGACATTGGACGCTATGC
AATCACTTCCCTGTTGTTCTCGTGCTTATCCGTCGCCTTACATGCAACTT
TCCACGAGACTGACGTCGTAGAGACCGAGATAGCCACCGTCTAG
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protein sequence of Gchil1259.t1

>Gchil1259.t1 ID=Gchil1259.t1|Name=Gchil1259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=198bp
MSYGSAADEERSLAYAESKPMPSADASKSRATAAASDVQLNNVGEAPQHL
SPTADRLVTCGRNTWRDCRPWPEFYSTRALSVPQFAALSERVAKNLHVYR
ANYTVLVAFWFVLMLLGSIPSVIIAALLFFAVERWAARRNGLSPRDKVVV
AFLVLLVIWLTDIGRYAITSLLFSCLSVALHATFHETDVVETEIATV*
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mRNA from alignment at tig00004437_pilon:817744..818337+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1259.t1 ID=Gchil1259.t1|Name=Gchil1259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00004437_pilon:817744..818337+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTACGGCTCAGCCGCTGACGAGGAGCGCTCGCTTGCATACGCCGA
ATCTAAGCCAATGCCTTCCGCAGATGCCAGCAAGTCGCGTGCGACTGCCG
CCGCGTCCGACGTTCAGTTGAACAACGTCGGTGAGGCGCCGCAGCACCTC
TCTCCCACCGCCGATCGCCTCGTCACCTGCGGGCGTAATACATGGCGAGA
TTGCCGCCCATGGCCCGAGTTCTACTCCACGCGCGCTCTGTCGGTGCCGC
AGTTTGCGGCTCTCAGCGAAAGAGTTGCCAAGAATCTTCATGTGTATCGT
GCAAACTACACTGTGCTCGTTGCGTTCTGGTTTGTCCTTATGTTGCTTGG
CTCCATTCCGAGCGTTATTATCGCTGCGCTCCTGTTTTTCGCTGTTGAGC
GATGGGCTGCTCGACGGAACGGTCTTTCGCCACGGGACAAGGTGGTCGTC
GCTTTCTTGGTTTTGCTTGTTATCTGGCTCACTGACATTGGACGCTATGC
AATCACTTCCCTGTTGTTCTCGTGCTTATCCGTCGCCTTACATGCAACTT
TCCACGAGACTGACGTCGTAGAGACCGAGATAGCCACCGTCTAG
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Coding sequence (CDS) from alignment at tig00004437_pilon:817744..818337+

>Gchil1259.t1 ID=Gchil1259.t1|Name=Gchil1259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00004437_pilon:817744..818337+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTACGGCTCAGCCGCTGACGAGGAGCGCTCGCTTGCATACGCCGA
ATCTAAGCCAATGCCTTCCGCAGATGCCAGCAAGTCGCGTGCGACTGCCG
CCGCGTCCGACGTTCAGTTGAACAACGTCGGTGAGGCGCCGCAGCACCTC
TCTCCCACCGCCGATCGCCTCGTCACCTGCGGGCGTAATACATGGCGAGA
TTGCCGCCCATGGCCCGAGTTCTACTCCACGCGCGCTCTGTCGGTGCCGC
AGTTTGCGGCTCTCAGCGAAAGAGTTGCCAAGAATCTTCATGTGTATCGT
GCAAACTACACTGTGCTCGTTGCGTTCTGGTTTGTCCTTATGTTGCTTGG
CTCCATTCCGAGCGTTATTATCGCTGCGCTCCTGTTTTTCGCTGTTGAGC
GATGGGCTGCTCGACGGAACGGTCTTTCGCCACGGGACAAGGTGGTCGTC
GCTTTCTTGGTTTTGCTTGTTATCTGGCTCACTGACATTGGACGCTATGC
AATCACTTCCCTGTTGTTCTCGTGCTTATCCGTCGCCTTACATGCAACTT
TCCACGAGACTGACGTCGTAGAGACCGAGATAGCCACCGTCTAG
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