Gchil1213.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1213.t1
Unique NameGchil1213.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:171227..171933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1213Gchil1213Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 171227..171933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1213.t1Gchil1213.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 171227..171933 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1213.t1.stop1Gchil1213.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 171227..171229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1213.t1.CDS1Gchil1213.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 171227..171451 -
Gchil1213.t1.CDS2Gchil1213.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 171525..171656 -
Gchil1213.t1.CDS3Gchil1213.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 171757..171933 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1213.t1.exon1Gchil1213.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 171227..171451 -
Gchil1213.t1.exon2Gchil1213.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 171525..171656 -
Gchil1213.t1.exon3Gchil1213.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 171757..171933 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1213.t1.intron1Gchil1213.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 171452..171524 -
Gchil1213.t1.intron2Gchil1213.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004437_pilon 171657..171756 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1213.t1.start1Gchil1213.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 171931..171933 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1213.t1 ID=Gchil1213.t1|Name=Gchil1213.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=178bp
MGRLECCRIILYIVEWIWTTVVMAIFPNKLAVEAPTVNGAFENICLFNAN
VGRSRCQYGVAWATVAFVVLSITMIWYFLDYCSNIQLPANVEFIIFSWLA
LWWFVGSVTLTATKSSRAPSPSNVPVVFAWMLFILSMISAYIGSRGPKTF
EYRMSETEPEPEGSYRSYGEGSSYQQA*
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spliced messenger RNA

>Gchil1213.t1 ID=Gchil1213.t1|Name=Gchil1213.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00004437_pilon:171227..171933- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGTTTGGAGTGCTGTCGCATCATTCTGTATATCGTAGAATGGAT
ATGGACAACAGTTGTAATGGCCATCTTCCCGAACAAATTAGCCGTAGAGG
CACCAACAGTGAACGGAGCGTTTGAAAACATATGTCTGTTCAATGCGAAC
GTGGGTCGAAGTCGATGTCAGTACGGTGTGGCATGGGCAACAGTTGCATT
TGTGGTGCTTTCTATCACCATGATATGGTACTTTCTTGATTATTGTTCCA
ACATTCAACTGCCGGCCAATGTGGAGTTTATCATTTTTTCTTGGCTCGCT
CTATGGTGGTTTGTCGGTAGCGTCACTCTAACAGCAACAAAGTCGTCAAG
AGCACCATCGCCGTCAAATGTACCGGTTGTATTTGCATGGATGTTATTTA
TTCTCAGCATGATATCAGCGTATATTGGTAGTAGAGGACCGAAAACTTTT
GAATATCGTATGTCGGAAACCGAGCCTGAGCCTGAAGGATCGTACCGCTC
GTATGGTGAGGGATCTTCCTATCAGCAAGCCTGA
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protein sequence of Gchil1213.t1

>Gchil1213.t1 ID=Gchil1213.t1|Name=Gchil1213.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=178bp
MGRLECCRIILYIVEWIWTTVVMAIFPNKLAVEAPTVNGAFENICLFNAN
VGRSRCQYGVAWATVAFVVLSITMIWYFLDYCSNIQLPANVEFIIFSWLA
LWWFVGSVTLTATKSSRAPSPSNVPVVFAWMLFILSMISAYIGSRGPKTF
EYRMSETEPEPEGSYRSYGEGSSYQQA*
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mRNA from alignment at tig00004437_pilon:171227..171933-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1213.t1 ID=Gchil1213.t1|Name=Gchil1213.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=707bp|location=Sequence derived from alignment at tig00004437_pilon:171227..171933- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCGTTTGGAGTGCTGTCGCATCATTCTGTATATCGTAGAATGGAT
ATGGACAACAGTTGTAATGGCCATCTTCCCGAACAAATTAGCCGTAGAGG
CACCAACAGTGAACGGAGCGTTTGAAAACATATGTCTGTTCAATGCGAAC
GTGGGTCGAAGTCGATGTCAGTACGGTGTACGTTTCTAAAACGCAGACCA
GCAGGTTGTGTGGTGTGTGTGTATACTTTTGGATACTAACTGTTTTATGT
GGAATCATGGACATTGTATACACACAGGTGGCATGGGCAACAGTTGCATT
TGTGGTGCTTTCTATCACCATGATATGGTACTTTCTTGATTATTGTTCCA
ACATTCAACTGCCGGCCAATGTGGAGTTTATCATTTTTTCTTGGCTCGCT
CTATGGTGGGTAAGTCAAAGCTCGTCAGAAACTGCTTGATCGAACACAAC
AAAAAGGTGACTAACCAACTCGTGCGAAATAGTTTGTCGGTAGCGTCACT
CTAACAGCAACAAAGTCGTCAAGAGCACCATCGCCGTCAAATGTACCGGT
TGTATTTGCATGGATGTTATTTATTCTCAGCATGATATCAGCGTATATTG
GTAGTAGAGGACCGAAAACTTTTGAATATCGTATGTCGGAAACCGAGCCT
GAGCCTGAAGGATCGTACCGCTCGTATGGTGAGGGATCTTCCTATCAGCA
AGCCTGA
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Coding sequence (CDS) from alignment at tig00004437_pilon:171227..171933-

>Gchil1213.t1 ID=Gchil1213.t1|Name=Gchil1213.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00004437_pilon:171227..171933- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCGTTTGGAGTGCTGTCGCATCATTCTGTATATCGTAGAATGGAT
ATGGACAACAGTTGTAATGGCCATCTTCCCGAACAAATTAGCCGTAGAGG
CACCAACAGTGAACGGAGCGTTTGAAAACATATGTCTGTTCAATGCGAAC
GTGGGTCGAAGTCGATGTCAGTACGGTGTGGCATGGGCAACAGTTGCATT
TGTGGTGCTTTCTATCACCATGATATGGTACTTTCTTGATTATTGTTCCA
ACATTCAACTGCCGGCCAATGTGGAGTTTATCATTTTTTCTTGGCTCGCT
CTATGGTGGTTTGTCGGTAGCGTCACTCTAACAGCAACAAAGTCGTCAAG
AGCACCATCGCCGTCAAATGTACCGGTTGTATTTGCATGGATGTTATTTA
TTCTCAGCATGATATCAGCGTATATTGGTAGTAGAGGACCGAAAACTTTT
GAATATCGTATGTCGGAAACCGAGCCTGAGCCTGAAGGATCGTACCGCTC
GTATGGTGAGGGATCTTCCTATCAGCAAGCCTGA
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