Gchil1144.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1144.t1
Unique Name	Gchil1144.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	410

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:186966..188195 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705004.1
Preferred name	tufA
PFAMs	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02358
GOs	GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0009295,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0016020,GO:0020011,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0055035,GO:0070013
Evalue	1.65e-254
EggNOG OGs	COG0050@1\|root,KOG0460@2759\|Eukaryota
Description	translation elongation factor activity
COG category	J
BRITE	ko00000,ko03012,ko03029,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1144	Gchil1144	Gracilaria chilensis NLEC103_M9 male	gene	tig00000237_pilon 186966..188195 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1144.t1.stop1	Gchil1144.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000237_pilon 186966..186968 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1144.t1.CDS1	Gchil1144.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000237_pilon 186966..188195 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1144.t1.exon1	Gchil1144.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000237_pilon 186966..188195 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1144.t1.start1	Gchil1144.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000237_pilon 188193..188195 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1144.t1	Gchil1144.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000237_pilon 186966..188195 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000237_pilon:186966..188195-
coding sequence from alignment at tig00000237_pilon:186966..188195-

mRNA sequence

>Gchil1144.t1 ID=Gchil1144.t1|Name=Gchil1144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=410bp
MARAKFERKKPHVNIGTIGHVDHGKTTLTAAISATLAAANDTKAKKFDEI
DAAPEEKARGITINTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMD
GAILVVSAADGPMPQTREHILLAKQVGVPNIVVFLNKQDQVDDEELLELV
ELEVRELLLQYDFPGEDIPFVAGSALLALEKVTDNNTIQRGENEWVDKIH
SLMDAIDEYIPTPIRDVEKTFLMAVEDVFSITGRGTVATGRIERGIIKVG
DTIEIVGIRETTTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKKDIERG
MVLAQPGTITPHTQFEAEVYILTKEEGGRHTPFFSGYRPQFYVRTTDVTG
TITQFTADDGSAAEMVMPGDRIKMSAELINPIAIEQGMRFAIREGGRTVG
AGVVSKILE*

spliced messenger RNA

>Gchil1144.t1 ID=Gchil1144.t1|Name=Gchil1144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000237_pilon:186966..188195- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGTGCAAAATTTGAAAGGAAAAAACCTCATGTTAATATTGGAAC
AATAGGACATGTGGATCATGGAAAAACAACACTTACTGCAGCTATATCAG
CAACTCTAGCAGCTGCAAATGATACAAAAGCAAAAAAATTTGATGAAATT
GATGCTGCACCAGAGGAAAAAGCAAGAGGCATAACAATTAACACAGCTCA
TGTCGAATATGAAACAAAAAATCGTCACTATGCACATGTAGATTGCCCAG
GTCATGCTGACTACGTAAAAAACATGATTACGGGTGCGGCCCAAATGGAT
GGAGCTATTTTAGTTGTATCCGCAGCAGACGGTCCAATGCCACAAACAAG
AGAACATATCTTGCTTGCTAAACAAGTAGGAGTACCAAATATAGTCGTTT
TCCTGAATAAACAAGACCAAGTAGATGATGAAGAACTCTTAGAGCTAGTA
GAATTAGAAGTACGTGAGCTATTGCTACAATACGATTTCCCGGGTGAGGA
TATTCCATTTGTAGCAGGTTCCGCGTTATTAGCTTTAGAAAAAGTAACAG
ATAATAACACGATTCAAAGAGGTGAAAACGAATGGGTTGATAAAATTCAT
TCTCTTATGGATGCTATAGATGAATACATTCCAACACCAATTAGAGATGT
AGAGAAAACCTTTTTAATGGCTGTAGAAGATGTATTCTCAATCACAGGTA
GAGGTACTGTTGCCACAGGAAGAATTGAAAGAGGTATAATAAAAGTTGGT
GATACGATAGAGATAGTAGGCATAAGAGAGACTACCACAACTACAATTAC
CGGACTTGAAATGTTTCAAAAAACTTTAGACGAAGGTATGGCAGGAGATA
ATATAGGCATATTATTAAGAGGTGTACAAAAAAAAGATATTGAACGAGGA
ATGGTATTAGCCCAGCCTGGAACAATTACACCTCATACCCAATTTGAAGC
AGAAGTATATATTCTCACAAAAGAAGAAGGCGGAAGACATACTCCTTTTT
TTTCCGGGTATCGTCCACAATTTTACGTACGTACTACTGATGTAACAGGA
ACAATTACACAATTTACTGCAGATGATGGATCTGCTGCAGAGATGGTAAT
GCCAGGAGATAGAATTAAAATGAGTGCTGAACTAATTAACCCCATTGCTA
TTGAGCAAGGTATGAGATTTGCTATACGTGAAGGAGGAAGAACTGTAGGG
GCAGGTGTAGTTTCTAAAATTCTTGAATAA

protein sequence of Gchil1144.t1

>Gchil1144.t1 ID=Gchil1144.t1|Name=Gchil1144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=410bp
MARAKFERKKPHVNIGTIGHVDHGKTTLTAAISATLAAANDTKAKKFDEI
DAAPEEKARGITINTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMD
GAILVVSAADGPMPQTREHILLAKQVGVPNIVVFLNKQDQVDDEELLELV
ELEVRELLLQYDFPGEDIPFVAGSALLALEKVTDNNTIQRGENEWVDKIH
SLMDAIDEYIPTPIRDVEKTFLMAVEDVFSITGRGTVATGRIERGIIKVG
DTIEIVGIRETTTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKKDIERG
MVLAQPGTITPHTQFEAEVYILTKEEGGRHTPFFSGYRPQFYVRTTDVTG
TITQFTADDGSAAEMVMPGDRIKMSAELINPIAIEQGMRFAIREGGRTVG
AGVVSKILE*

mRNA from alignment at tig00000237_pilon:186966..188195-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1144.t1 ID=Gchil1144.t1|Name=Gchil1144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000237_pilon:186966..188195- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACGTGCAAAATTTGAAAGGAAAAAACCTCATGTTAATATTGGAAC
AATAGGACATGTGGATCATGGAAAAACAACACTTACTGCAGCTATATCAG
CAACTCTAGCAGCTGCAAATGATACAAAAGCAAAAAAATTTGATGAAATT
GATGCTGCACCAGAGGAAAAAGCAAGAGGCATAACAATTAACACAGCTCA
TGTCGAATATGAAACAAAAAATCGTCACTATGCACATGTAGATTGCCCAG
GTCATGCTGACTACGTAAAAAACATGATTACGGGTGCGGCCCAAATGGAT
GGAGCTATTTTAGTTGTATCCGCAGCAGACGGTCCAATGCCACAAACAAG
AGAACATATCTTGCTTGCTAAACAAGTAGGAGTACCAAATATAGTCGTTT
TCCTGAATAAACAAGACCAAGTAGATGATGAAGAACTCTTAGAGCTAGTA
GAATTAGAAGTACGTGAGCTATTGCTACAATACGATTTCCCGGGTGAGGA
TATTCCATTTGTAGCAGGTTCCGCGTTATTAGCTTTAGAAAAAGTAACAG
ATAATAACACGATTCAAAGAGGTGAAAACGAATGGGTTGATAAAATTCAT
TCTCTTATGGATGCTATAGATGAATACATTCCAACACCAATTAGAGATGT
AGAGAAAACCTTTTTAATGGCTGTAGAAGATGTATTCTCAATCACAGGTA
GAGGTACTGTTGCCACAGGAAGAATTGAAAGAGGTATAATAAAAGTTGGT
GATACGATAGAGATAGTAGGCATAAGAGAGACTACCACAACTACAATTAC
CGGACTTGAAATGTTTCAAAAAACTTTAGACGAAGGTATGGCAGGAGATA
ATATAGGCATATTATTAAGAGGTGTACAAAAAAAAGATATTGAACGAGGA
ATGGTATTAGCCCAGCCTGGAACAATTACACCTCATACCCAATTTGAAGC
AGAAGTATATATTCTCACAAAAGAAGAAGGCGGAAGACATACTCCTTTTT
TTTCCGGGTATCGTCCACAATTTTACGTACGTACTACTGATGTAACAGGA
ACAATTACACAATTTACTGCAGATGATGGATCTGCTGCAGAGATGGTAAT
GCCAGGAGATAGAATTAAAATGAGTGCTGAACTAATTAACCCCATTGCTA
TTGAGCAAGGTATGAGATTTGCTATACGTGAAGGAGGAAGAACTGTAGGG
GCAGGTGTAGTTTCTAAAATTCTTGAATAA

Coding sequence (CDS) from alignment at tig00000237_pilon:186966..188195-

>Gchil1144.t1 ID=Gchil1144.t1|Name=Gchil1144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00000237_pilon:186966..188195- (Gracilaria chilensis NLEC103_M9 male)
ATGGCACGTGCAAAATTTGAAAGGAAAAAACCTCATGTTAATATTGGAAC
AATAGGACATGTGGATCATGGAAAAACAACACTTACTGCAGCTATATCAG
CAACTCTAGCAGCTGCAAATGATACAAAAGCAAAAAAATTTGATGAAATT
GATGCTGCACCAGAGGAAAAAGCAAGAGGCATAACAATTAACACAGCTCA
TGTCGAATATGAAACAAAAAATCGTCACTATGCACATGTAGATTGCCCAG
GTCATGCTGACTACGTAAAAAACATGATTACGGGTGCGGCCCAAATGGAT
GGAGCTATTTTAGTTGTATCCGCAGCAGACGGTCCAATGCCACAAACAAG
AGAACATATCTTGCTTGCTAAACAAGTAGGAGTACCAAATATAGTCGTTT
TCCTGAATAAACAAGACCAAGTAGATGATGAAGAACTCTTAGAGCTAGTA
GAATTAGAAGTACGTGAGCTATTGCTACAATACGATTTCCCGGGTGAGGA
TATTCCATTTGTAGCAGGTTCCGCGTTATTAGCTTTAGAAAAAGTAACAG
ATAATAACACGATTCAAAGAGGTGAAAACGAATGGGTTGATAAAATTCAT
TCTCTTATGGATGCTATAGATGAATACATTCCAACACCAATTAGAGATGT
AGAGAAAACCTTTTTAATGGCTGTAGAAGATGTATTCTCAATCACAGGTA
GAGGTACTGTTGCCACAGGAAGAATTGAAAGAGGTATAATAAAAGTTGGT
GATACGATAGAGATAGTAGGCATAAGAGAGACTACCACAACTACAATTAC
CGGACTTGAAATGTTTCAAAAAACTTTAGACGAAGGTATGGCAGGAGATA
ATATAGGCATATTATTAAGAGGTGTACAAAAAAAAGATATTGAACGAGGA
ATGGTATTAGCCCAGCCTGGAACAATTACACCTCATACCCAATTTGAAGC
AGAAGTATATATTCTCACAAAAGAAGAAGGCGGAAGACATACTCCTTTTT
TTTCCGGGTATCGTCCACAATTTTACGTACGTACTACTGATGTAACAGGA
ACAATTACACAATTTACTGCAGATGATGGATCTGCTGCAGAGATGGTAAT
GCCAGGAGATAGAATTAAAATGAGTGCTGAACTAATTAACCCCATTGCTA
TTGAGCAAGGTATGAGATTTGCTATACGTGAAGGAGGAAGAACTGTAGGG
GCAGGTGTAGTTTCTAAAATTCTTGAATAA