Gchil1134.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1134.t1
Unique NameGchil1134.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:112451..113431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thapsdraft980
PFAMsMg_chelatase
Max annot lvl2836|Bacillariophyta
Evalue3.58e-179
EggNOG OGsCOG1239@1|root,2QRUY@2759|Eukaryota,2XEQ7@2836|Bacillariophyta
DescriptionInvolved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1134Gchil1134Gracilaria chilensis NLEC103_M9 malegenetig00000237_pilon 112451..113431 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1134.t1.stop1Gchil1134.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000237_pilon 112451..112453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1134.t1.CDS1Gchil1134.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 112451..113431 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1134.t1.exon1Gchil1134.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 112451..113431 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1134.t1.start1Gchil1134.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000237_pilon 113429..113431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1134.t1Gchil1134.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000237_pilon 112451..113431 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1134.t1 ID=Gchil1134.t1|Name=Gchil1134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=327bp
MKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRAIADLLPKIEVVQDDLFN
SHPSDYDLMSDSVKSQIESSNHLPTRFIDVPMVDLPLGATEDRVCGTIDI
EKALSEGVKTFEPGLLAKANRGILYVDEVNLLDDHLVDILLDAAASGWNT
VEREGISVRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKEPSLR
VKIVEQRSKFDSNPYICLEEFRDKQDELKSSIIAAQQRLPDVKIDYDLRV
KISEVCGTLDVDGLRGDIVTNRAAKAYAAYKNKTKVDINDIKTVITLCLR
HRLRKDPLETIDSGYKVQQVVDNILN*
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spliced messenger RNA

>Gchil1134.t1 ID=Gchil1134.t1|Name=Gchil1134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000237_pilon:112451..113431- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATTAGCATTGCTCTTGAATGTTATTGATCCTAAAATAGGTGGCGT
AATGATTATGGGTGATCGTGGTACTGGCAAGTCTACGACTATTAGGGCTA
TCGCGGATTTACTACCTAAAATTGAAGTTGTTCAAGATGATTTATTCAAT
TCACATCCTTCCGATTATGACTTAATGTCTGATAGTGTTAAATCTCAAAT
AGAAAGCAGCAATCATTTGCCTACTAGATTTATCGACGTACCTATGGTTG
ACCTCCCTCTAGGCGCAACTGAAGATAGGGTTTGTGGTACAATAGATATT
GAAAAAGCTCTATCAGAAGGTGTGAAAACTTTTGAACCAGGCCTACTAGC
AAAAGCTAATAGGGGTATTCTATATGTTGATGAAGTTAATTTATTAGATG
ATCATCTAGTGGATATCTTATTAGATGCAGCAGCTTCTGGTTGGAATACA
GTTGAACGTGAAGGTATATCTGTAAGACATCCGGCACGGTTTGTTTTAGT
AGGATCAGGTAATCCTGAAGAAGGAGAATTGAGACCCCAATTATTAGATC
GTTTCGGTATGCATGCAGAAATCCGTACAGTTAAAGAACCTTCTTTGAGA
GTTAAAATAGTAGAGCAAAGAAGTAAATTTGATAGTAACCCTTATATCTG
TTTAGAAGAATTTCGAGACAAACAAGATGAATTAAAGTCATCTATTATAG
CAGCTCAACAAAGACTACCTGATGTGAAAATTGATTATGATTTAAGAGTT
AAAATATCAGAAGTATGTGGTACTTTAGATGTGGATGGTTTAAGAGGTGA
TATAGTCACAAATAGAGCAGCTAAGGCTTATGCTGCTTATAAAAATAAGA
CTAAAGTGGACATCAATGATATTAAAACGGTTATTACCTTGTGTTTAAGG
CATAGATTAAGAAAAGATCCTTTAGAAACTATTGATTCAGGTTATAAAGT
TCAGCAAGTTGTAGATAATATATTAAATTAA
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protein sequence of Gchil1134.t1

>Gchil1134.t1 ID=Gchil1134.t1|Name=Gchil1134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=327bp
MKLALLLNVIDPKIGGVMIMGDRGTGKSTTIRAIADLLPKIEVVQDDLFN
SHPSDYDLMSDSVKSQIESSNHLPTRFIDVPMVDLPLGATEDRVCGTIDI
EKALSEGVKTFEPGLLAKANRGILYVDEVNLLDDHLVDILLDAAASGWNT
VEREGISVRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKEPSLR
VKIVEQRSKFDSNPYICLEEFRDKQDELKSSIIAAQQRLPDVKIDYDLRV
KISEVCGTLDVDGLRGDIVTNRAAKAYAAYKNKTKVDINDIKTVITLCLR
HRLRKDPLETIDSGYKVQQVVDNILN*
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mRNA from alignment at tig00000237_pilon:112451..113431-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1134.t1 ID=Gchil1134.t1|Name=Gchil1134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00000237_pilon:112451..113431- (Gracilaria chilensis NLEC103_M9 male)
ATGAAATTAGCATTGCTCTTGAATGTTATTGATCCTAAAATAGGTGGCGT
AATGATTATGGGTGATCGTGGTACTGGCAAGTCTACGACTATTAGGGCTA
TCGCGGATTTACTACCTAAAATTGAAGTTGTTCAAGATGATTTATTCAAT
TCACATCCTTCCGATTATGACTTAATGTCTGATAGTGTTAAATCTCAAAT
AGAAAGCAGCAATCATTTGCCTACTAGATTTATCGACGTACCTATGGTTG
ACCTCCCTCTAGGCGCAACTGAAGATAGGGTTTGTGGTACAATAGATATT
GAAAAAGCTCTATCAGAAGGTGTGAAAACTTTTGAACCAGGCCTACTAGC
AAAAGCTAATAGGGGTATTCTATATGTTGATGAAGTTAATTTATTAGATG
ATCATCTAGTGGATATCTTATTAGATGCAGCAGCTTCTGGTTGGAATACA
GTTGAACGTGAAGGTATATCTGTAAGACATCCGGCACGGTTTGTTTTAGT
AGGATCAGGTAATCCTGAAGAAGGAGAATTGAGACCCCAATTATTAGATC
GTTTCGGTATGCATGCAGAAATCCGTACAGTTAAAGAACCTTCTTTGAGA
GTTAAAATAGTAGAGCAAAGAAGTAAATTTGATAGTAACCCTTATATCTG
TTTAGAAGAATTTCGAGACAAACAAGATGAATTAAAGTCATCTATTATAG
CAGCTCAACAAAGACTACCTGATGTGAAAATTGATTATGATTTAAGAGTT
AAAATATCAGAAGTATGTGGTACTTTAGATGTGGATGGTTTAAGAGGTGA
TATAGTCACAAATAGAGCAGCTAAGGCTTATGCTGCTTATAAAAATAAGA
CTAAAGTGGACATCAATGATATTAAAACGGTTATTACCTTGTGTTTAAGG
CATAGATTAAGAAAAGATCCTTTAGAAACTATTGATTCAGGTTATAAAGT
TCAGCAAGTTGTAGATAATATATTAAATTAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:112451..113431-

>Gchil1134.t1 ID=Gchil1134.t1|Name=Gchil1134.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00000237_pilon:112451..113431- (Gracilaria chilensis NLEC103_M9 male)
ATGAAATTAGCATTGCTCTTGAATGTTATTGATCCTAAAATAGGTGGCGT
AATGATTATGGGTGATCGTGGTACTGGCAAGTCTACGACTATTAGGGCTA
TCGCGGATTTACTACCTAAAATTGAAGTTGTTCAAGATGATTTATTCAAT
TCACATCCTTCCGATTATGACTTAATGTCTGATAGTGTTAAATCTCAAAT
AGAAAGCAGCAATCATTTGCCTACTAGATTTATCGACGTACCTATGGTTG
ACCTCCCTCTAGGCGCAACTGAAGATAGGGTTTGTGGTACAATAGATATT
GAAAAAGCTCTATCAGAAGGTGTGAAAACTTTTGAACCAGGCCTACTAGC
AAAAGCTAATAGGGGTATTCTATATGTTGATGAAGTTAATTTATTAGATG
ATCATCTAGTGGATATCTTATTAGATGCAGCAGCTTCTGGTTGGAATACA
GTTGAACGTGAAGGTATATCTGTAAGACATCCGGCACGGTTTGTTTTAGT
AGGATCAGGTAATCCTGAAGAAGGAGAATTGAGACCCCAATTATTAGATC
GTTTCGGTATGCATGCAGAAATCCGTACAGTTAAAGAACCTTCTTTGAGA
GTTAAAATAGTAGAGCAAAGAAGTAAATTTGATAGTAACCCTTATATCTG
TTTAGAAGAATTTCGAGACAAACAAGATGAATTAAAGTCATCTATTATAG
CAGCTCAACAAAGACTACCTGATGTGAAAATTGATTATGATTTAAGAGTT
AAAATATCAGAAGTATGTGGTACTTTAGATGTGGATGGTTTAAGAGGTGA
TATAGTCACAAATAGAGCAGCTAAGGCTTATGCTGCTTATAAAAATAAGA
CTAAAGTGGACATCAATGATATTAAAACGGTTATTACCTTGTGTTTAAGG
CATAGATTAAGAAAAGATCCTTTAGAAACTATTGATTCAGGTTATAAAGT
TCAGCAAGTTGTAGATAATATATTAAATTAA
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