Gchil1130.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1130.t1
Unique Name	Gchil1130.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	504

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:62128..63639 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.AAC35666
Preferred name	atpA
PFAMs	ATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02111
KEGG TC	3.A.2.1
KEGG Pathway	ko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG Module	M00157
Evalue	6.14e-288
EggNOG OGs	COG0056@1\|root,KOG1353@2759\|Eukaryota
EC	3.6.3.14
Description	proton-transporting ATP synthase activity, rotational mechanism
COG category	C
BRITE	ko00000,ko00001,ko00002,ko00194,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1130	Gchil1130	Gracilaria chilensis NLEC103_M9 male	gene	tig00000237_pilon 62128..63639 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1130.t1.start1	Gchil1130.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000237_pilon 62128..62130 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1130.t1.CDS1	Gchil1130.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000237_pilon 62128..63639 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1130.t1.exon1	Gchil1130.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000237_pilon 62128..63639 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1130.t1.stop1	Gchil1130.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000237_pilon 63637..63639 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1130.t1	Gchil1130.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000237_pilon 62128..63639 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000237_pilon:62128..63639+
coding sequence from alignment at tig00000237_pilon:62128..63639+

mRNA sequence

>Gchil1130.t1 ID=Gchil1130.t1|Name=Gchil1130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp
MLNIRPDEISNVIRQQIDKYEEEVQVANIGTVLQVGDGIARVYGLDEVMA
GELLEFEDQTIGIALNLESDNVGVVLMGEGRNILEGSSVKATGKIAQIPV
GDAFLGRVVDPLARPIDAKGLPNASGTRLIESYAPGIIGRQSVCEPLQTG
ITAIDSMIPIGRGQRELIIGDRQTGKTAVALDTIINQKGQDVVCIYVAIG
QKASSVAQVVSALQDKGALDYTIIVASNADAPATLQYIAPYTGAALAEYF
MYKGKATLVVYDDLTKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
RAAKLNSELGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSGDLF
NSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFA
SDLDKATQNQLSRGQRLREILKQAQNSPIPVEEQTAIIYTGINGYLDNIN
LSQVKEFIESLREDLRNSKPEFGESIRTTKKLSADAEELLKQSIEDVKQA
FSI*

spliced messenger RNA

>Gchil1130.t1 ID=Gchil1130.t1|Name=Gchil1130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000237_pilon:62128..63639+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAAATATCAGACCAGACGAAATAAGTAATGTCATACGTCAACAAAT
TGACAAGTATGAAGAAGAGGTTCAAGTAGCTAATATAGGCACTGTTTTAC
AGGTTGGAGATGGTATTGCGAGGGTATATGGTTTGGATGAGGTTATGGCT
GGTGAGTTACTTGAATTTGAAGATCAAACTATTGGTATAGCTCTTAATTT
AGAGAGTGACAATGTTGGTGTGGTTCTAATGGGTGAAGGAAGAAATATAT
TAGAAGGTAGTTCTGTAAAAGCAACTGGTAAAATTGCTCAAATACCAGTC
GGCGACGCTTTTCTGGGTAGAGTTGTGGATCCATTAGCAAGACCAATTGA
TGCAAAAGGTTTACCAAATGCTTCAGGAACAAGATTAATTGAATCCTATG
CACCTGGTATTATCGGAAGACAATCTGTTTGTGAGCCTCTACAAACAGGT
ATTACAGCAATTGATTCCATGATACCTATAGGGAGAGGACAAAGAGAATT
AATTATTGGTGATAGGCAAACTGGTAAAACTGCAGTGGCTTTGGATACAA
TTATCAATCAAAAAGGTCAAGACGTAGTTTGCATTTATGTGGCTATTGGT
CAAAAAGCTTCATCGGTTGCTCAAGTTGTATCTGCTTTACAAGATAAAGG
CGCATTAGATTATACAATAATTGTAGCATCTAATGCTGACGCCCCAGCTA
CATTACAATACATTGCTCCTTATACAGGTGCTGCTTTAGCAGAGTATTTT
ATGTATAAAGGTAAAGCAACCTTAGTTGTCTATGATGATTTAACTAAACA
GGCACAAGCTTATCGTCAAATGTCTTTATTGCTTCGTAGACCTCCAGGCC
GTGAAGCTTATCCAGGAGATGTATTCTACTTGCATTCTAGATTATTAGAA
AGAGCAGCTAAGCTTAATAGTGAATTAGGTGGTGGTAGTATGACTGCTTT
ACCTATTATCGAAACACAAGCAGGTGATGTTTCTGCGTATATTCCTACAA
ATGTTATTTCTATTACAGATGGTCAAATCTTTCTTTCTGGAGACTTATTT
AACTCAGGTATTCGACCAGCAATTAATGTTGGAATTTCTGTATCTCGCGT
AGGTTCTGCAGCTCAAATTAAAGCTATGAAACAAGTTGCAGGTAAATTAA
AGCTAGAATTAGCTCAGTTTGCAGAATTAGAAGCATTTTCTCAGTTTGCT
TCGGATTTAGATAAAGCAACACAAAACCAATTATCTCGTGGACAGCGTCT
AAGAGAAATTTTAAAGCAAGCACAAAATTCTCCGATTCCTGTTGAAGAAC
AAACGGCTATTATATATACAGGCATTAATGGTTATTTAGATAATATTAAT
TTATCGCAAGTAAAAGAGTTTATTGAATCTTTAAGAGAAGATTTACGAAA
TTCAAAGCCTGAGTTTGGAGAGAGTATACGTACTACCAAAAAACTCAGTG
CAGACGCAGAAGAACTATTAAAACAATCAATTGAAGATGTGAAACAAGCT
TTTTCAATCTAG

protein sequence of Gchil1130.t1

>Gchil1130.t1 ID=Gchil1130.t1|Name=Gchil1130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=504bp
MLNIRPDEISNVIRQQIDKYEEEVQVANIGTVLQVGDGIARVYGLDEVMA
GELLEFEDQTIGIALNLESDNVGVVLMGEGRNILEGSSVKATGKIAQIPV
GDAFLGRVVDPLARPIDAKGLPNASGTRLIESYAPGIIGRQSVCEPLQTG
ITAIDSMIPIGRGQRELIIGDRQTGKTAVALDTIINQKGQDVVCIYVAIG
QKASSVAQVVSALQDKGALDYTIIVASNADAPATLQYIAPYTGAALAEYF
MYKGKATLVVYDDLTKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
RAAKLNSELGGGSMTALPIIETQAGDVSAYIPTNVISITDGQIFLSGDLF
NSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFSQFA
SDLDKATQNQLSRGQRLREILKQAQNSPIPVEEQTAIIYTGINGYLDNIN
LSQVKEFIESLREDLRNSKPEFGESIRTTKKLSADAEELLKQSIEDVKQA
FSI*

mRNA from alignment at tig00000237_pilon:62128..63639+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1130.t1 ID=Gchil1130.t1|Name=Gchil1130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000237_pilon:62128..63639+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTAAATATCAGACCAGACGAAATAAGTAATGTCATACGTCAACAAAT
TGACAAGTATGAAGAAGAGGTTCAAGTAGCTAATATAGGCACTGTTTTAC
AGGTTGGAGATGGTATTGCGAGGGTATATGGTTTGGATGAGGTTATGGCT
GGTGAGTTACTTGAATTTGAAGATCAAACTATTGGTATAGCTCTTAATTT
AGAGAGTGACAATGTTGGTGTGGTTCTAATGGGTGAAGGAAGAAATATAT
TAGAAGGTAGTTCTGTAAAAGCAACTGGTAAAATTGCTCAAATACCAGTC
GGCGACGCTTTTCTGGGTAGAGTTGTGGATCCATTAGCAAGACCAATTGA
TGCAAAAGGTTTACCAAATGCTTCAGGAACAAGATTAATTGAATCCTATG
CACCTGGTATTATCGGAAGACAATCTGTTTGTGAGCCTCTACAAACAGGT
ATTACAGCAATTGATTCCATGATACCTATAGGGAGAGGACAAAGAGAATT
AATTATTGGTGATAGGCAAACTGGTAAAACTGCAGTGGCTTTGGATACAA
TTATCAATCAAAAAGGTCAAGACGTAGTTTGCATTTATGTGGCTATTGGT
CAAAAAGCTTCATCGGTTGCTCAAGTTGTATCTGCTTTACAAGATAAAGG
CGCATTAGATTATACAATAATTGTAGCATCTAATGCTGACGCCCCAGCTA
CATTACAATACATTGCTCCTTATACAGGTGCTGCTTTAGCAGAGTATTTT
ATGTATAAAGGTAAAGCAACCTTAGTTGTCTATGATGATTTAACTAAACA
GGCACAAGCTTATCGTCAAATGTCTTTATTGCTTCGTAGACCTCCAGGCC
GTGAAGCTTATCCAGGAGATGTATTCTACTTGCATTCTAGATTATTAGAA
AGAGCAGCTAAGCTTAATAGTGAATTAGGTGGTGGTAGTATGACTGCTTT
ACCTATTATCGAAACACAAGCAGGTGATGTTTCTGCGTATATTCCTACAA
ATGTTATTTCTATTACAGATGGTCAAATCTTTCTTTCTGGAGACTTATTT
AACTCAGGTATTCGACCAGCAATTAATGTTGGAATTTCTGTATCTCGCGT
AGGTTCTGCAGCTCAAATTAAAGCTATGAAACAAGTTGCAGGTAAATTAA
AGCTAGAATTAGCTCAGTTTGCAGAATTAGAAGCATTTTCTCAGTTTGCT
TCGGATTTAGATAAAGCAACACAAAACCAATTATCTCGTGGACAGCGTCT
AAGAGAAATTTTAAAGCAAGCACAAAATTCTCCGATTCCTGTTGAAGAAC
AAACGGCTATTATATATACAGGCATTAATGGTTATTTAGATAATATTAAT
TTATCGCAAGTAAAAGAGTTTATTGAATCTTTAAGAGAAGATTTACGAAA
TTCAAAGCCTGAGTTTGGAGAGAGTATACGTACTACCAAAAAACTCAGTG
CAGACGCAGAAGAACTATTAAAACAATCAATTGAAGATGTGAAACAAGCT
TTTTCAATCTAG

Coding sequence (CDS) from alignment at tig00000237_pilon:62128..63639+

>Gchil1130.t1 ID=Gchil1130.t1|Name=Gchil1130.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000237_pilon:62128..63639+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTAAATATCAGACCAGACGAAATAAGTAATGTCATACGTCAACAAAT
TGACAAGTATGAAGAAGAGGTTCAAGTAGCTAATATAGGCACTGTTTTAC
AGGTTGGAGATGGTATTGCGAGGGTATATGGTTTGGATGAGGTTATGGCT
GGTGAGTTACTTGAATTTGAAGATCAAACTATTGGTATAGCTCTTAATTT
AGAGAGTGACAATGTTGGTGTGGTTCTAATGGGTGAAGGAAGAAATATAT
TAGAAGGTAGTTCTGTAAAAGCAACTGGTAAAATTGCTCAAATACCAGTC
GGCGACGCTTTTCTGGGTAGAGTTGTGGATCCATTAGCAAGACCAATTGA
TGCAAAAGGTTTACCAAATGCTTCAGGAACAAGATTAATTGAATCCTATG
CACCTGGTATTATCGGAAGACAATCTGTTTGTGAGCCTCTACAAACAGGT
ATTACAGCAATTGATTCCATGATACCTATAGGGAGAGGACAAAGAGAATT
AATTATTGGTGATAGGCAAACTGGTAAAACTGCAGTGGCTTTGGATACAA
TTATCAATCAAAAAGGTCAAGACGTAGTTTGCATTTATGTGGCTATTGGT
CAAAAAGCTTCATCGGTTGCTCAAGTTGTATCTGCTTTACAAGATAAAGG
CGCATTAGATTATACAATAATTGTAGCATCTAATGCTGACGCCCCAGCTA
CATTACAATACATTGCTCCTTATACAGGTGCTGCTTTAGCAGAGTATTTT
ATGTATAAAGGTAAAGCAACCTTAGTTGTCTATGATGATTTAACTAAACA
GGCACAAGCTTATCGTCAAATGTCTTTATTGCTTCGTAGACCTCCAGGCC
GTGAAGCTTATCCAGGAGATGTATTCTACTTGCATTCTAGATTATTAGAA
AGAGCAGCTAAGCTTAATAGTGAATTAGGTGGTGGTAGTATGACTGCTTT
ACCTATTATCGAAACACAAGCAGGTGATGTTTCTGCGTATATTCCTACAA
ATGTTATTTCTATTACAGATGGTCAAATCTTTCTTTCTGGAGACTTATTT
AACTCAGGTATTCGACCAGCAATTAATGTTGGAATTTCTGTATCTCGCGT
AGGTTCTGCAGCTCAAATTAAAGCTATGAAACAAGTTGCAGGTAAATTAA
AGCTAGAATTAGCTCAGTTTGCAGAATTAGAAGCATTTTCTCAGTTTGCT
TCGGATTTAGATAAAGCAACACAAAACCAATTATCTCGTGGACAGCGTCT
AAGAGAAATTTTAAAGCAAGCACAAAATTCTCCGATTCCTGTTGAAGAAC
AAACGGCTATTATATATACAGGCATTAATGGTTATTTAGATAATATTAAT
TTATCGCAAGTAAAAGAGTTTATTGAATCTTTAAGAGAAGATTTACGAAA
TTCAAAGCCTGAGTTTGGAGAGAGTATACGTACTACCAAAAAACTCAGTG
CAGACGCAGAAGAACTATTAAAACAATCAATTGAAGATGTGAAACAAGCT
TTTTCAATCTAG