Gchil11030.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil11030.t1
Unique Name	Gchil11030.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	276

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000021_pilon	contig	tig00000021_pilon:734010..734837 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD39312
Max annot lvl	2759\|Eukaryota
Evalue	8.8e-23
EggNOG OGs	2EXBI@1\|root,2SZ19@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil11030	Gchil11030	Gracilaria chilensis NLEC103_M9 male	gene	tig00000021_pilon 734010..734837 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11030.t1.start1	Gchil11030.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000021_pilon 734010..734012 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11030.t1.CDS1	Gchil11030.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000021_pilon 734010..734837 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11030.t1.exon1	Gchil11030.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000021_pilon 734010..734837 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11030.t1.stop1	Gchil11030.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000021_pilon 734835..734837 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11030.t1	Gchil11030.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000021_pilon 734010..734837 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000021_pilon:734010..734837+
coding sequence from alignment at tig00000021_pilon:734010..734837+

mRNA sequence

>Gchil11030.t1 ID=Gchil11030.t1|Name=Gchil11030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp
MQVVYGVPSANIPPPSDLPVQTPWHFSKTPPFCSKLLKEPRPLPDVCKMD
PVSKLCADGKPTFFSHLEQDYYLYVNHFSRLTRRGIYLDIAADEPVSMSN
TYFFDACLGWSGLCVEANPTFLSGLYKYRTCAILPTCLSGVGGKSVSFAM
PLSVPGGWKTKKNHESWARSDTHTPLVRQVCTTLTEAAKKHKLKLIDYMS
LDVQGHELNVLKGIDWEHLIINVMTVEITSESIEAIQTFMVSKEYKRHYP
DSEPNGMQSEYVIFLHKKVEWGRPR*

spliced messenger RNA

>Gchil11030.t1 ID=Gchil11030.t1|Name=Gchil11030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000021_pilon:734010..734837+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTAGTCTATGGGGTTCCCTCTGCCAACATTCCCCCGCCTTCGGA
TCTTCCGGTGCAAACACCATGGCATTTTTCGAAGACACCACCCTTCTGCA
GCAAACTTCTGAAGGAACCTCGTCCTTTACCTGATGTCTGCAAAATGGAT
CCCGTGTCAAAGCTCTGTGCTGATGGTAAGCCTACCTTCTTTTCGCATTT
GGAGCAAGACTACTACCTCTATGTGAATCACTTCTCCCGTTTGACCCGCC
GTGGCATCTACCTCGATATAGCCGCCGATGAGCCAGTTAGTATGAGCAAC
ACATATTTCTTTGACGCATGCCTCGGATGGTCAGGTTTGTGCGTGGAGGC
AAATCCTACTTTCTTATCCGGTCTGTACAAATATCGCACATGTGCGATTC
TACCAACCTGTCTATCAGGTGTTGGTGGTAAATCAGTCAGTTTTGCCATG
CCCTTGAGTGTGCCTGGTGGTTGGAAAACAAAAAAGAACCATGAATCTTG
GGCAAGAAGTGACACACATACCCCGTTGGTGAGGCAAGTTTGTACCACTT
TGACAGAAGCCGCAAAGAAGCACAAGCTCAAACTTATCGATTACATGAGC
TTGGATGTACAGGGTCATGAATTAAACGTGCTCAAAGGAATTGACTGGGA
ACATCTGATAATCAATGTCATGACGGTTGAAATCACGTCTGAATCTATCG
AGGCGATTCAAACCTTCATGGTTTCGAAAGAATACAAAAGGCATTATCCG
GACAGTGAACCCAATGGAATGCAGTCAGAATATGTCATATTTCTTCACAA
GAAGGTTGAGTGGGGCAGGCCAAGATAG

protein sequence of Gchil11030.t1

>Gchil11030.t1 ID=Gchil11030.t1|Name=Gchil11030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=276bp
MQVVYGVPSANIPPPSDLPVQTPWHFSKTPPFCSKLLKEPRPLPDVCKMD
PVSKLCADGKPTFFSHLEQDYYLYVNHFSRLTRRGIYLDIAADEPVSMSN
TYFFDACLGWSGLCVEANPTFLSGLYKYRTCAILPTCLSGVGGKSVSFAM
PLSVPGGWKTKKNHESWARSDTHTPLVRQVCTTLTEAAKKHKLKLIDYMS
LDVQGHELNVLKGIDWEHLIINVMTVEITSESIEAIQTFMVSKEYKRHYP
DSEPNGMQSEYVIFLHKKVEWGRPR*

mRNA from alignment at tig00000021_pilon:734010..734837+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil11030.t1 ID=Gchil11030.t1|Name=Gchil11030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000021_pilon:734010..734837+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGTAGTCTATGGGGTTCCCTCTGCCAACATTCCCCCGCCTTCGGA
TCTTCCGGTGCAAACACCATGGCATTTTTCGAAGACACCACCCTTCTGCA
GCAAACTTCTGAAGGAACCTCGTCCTTTACCTGATGTCTGCAAAATGGAT
CCCGTGTCAAAGCTCTGTGCTGATGGTAAGCCTACCTTCTTTTCGCATTT
GGAGCAAGACTACTACCTCTATGTGAATCACTTCTCCCGTTTGACCCGCC
GTGGCATCTACCTCGATATAGCCGCCGATGAGCCAGTTAGTATGAGCAAC
ACATATTTCTTTGACGCATGCCTCGGATGGTCAGGTTTGTGCGTGGAGGC
AAATCCTACTTTCTTATCCGGTCTGTACAAATATCGCACATGTGCGATTC
TACCAACCTGTCTATCAGGTGTTGGTGGTAAATCAGTCAGTTTTGCCATG
CCCTTGAGTGTGCCTGGTGGTTGGAAAACAAAAAAGAACCATGAATCTTG
GGCAAGAAGTGACACACATACCCCGTTGGTGAGGCAAGTTTGTACCACTT
TGACAGAAGCCGCAAAGAAGCACAAGCTCAAACTTATCGATTACATGAGC
TTGGATGTACAGGGTCATGAATTAAACGTGCTCAAAGGAATTGACTGGGA
ACATCTGATAATCAATGTCATGACGGTTGAAATCACGTCTGAATCTATCG
AGGCGATTCAAACCTTCATGGTTTCGAAAGAATACAAAAGGCATTATCCG
GACAGTGAACCCAATGGAATGCAGTCAGAATATGTCATATTTCTTCACAA
GAAGGTTGAGTGGGGCAGGCCAAGATAG

Coding sequence (CDS) from alignment at tig00000021_pilon:734010..734837+

>Gchil11030.t1 ID=Gchil11030.t1|Name=Gchil11030.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00000021_pilon:734010..734837+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGTAGTCTATGGGGTTCCCTCTGCCAACATTCCCCCGCCTTCGGA
TCTTCCGGTGCAAACACCATGGCATTTTTCGAAGACACCACCCTTCTGCA
GCAAACTTCTGAAGGAACCTCGTCCTTTACCTGATGTCTGCAAAATGGAT
CCCGTGTCAAAGCTCTGTGCTGATGGTAAGCCTACCTTCTTTTCGCATTT
GGAGCAAGACTACTACCTCTATGTGAATCACTTCTCCCGTTTGACCCGCC
GTGGCATCTACCTCGATATAGCCGCCGATGAGCCAGTTAGTATGAGCAAC
ACATATTTCTTTGACGCATGCCTCGGATGGTCAGGTTTGTGCGTGGAGGC
AAATCCTACTTTCTTATCCGGTCTGTACAAATATCGCACATGTGCGATTC
TACCAACCTGTCTATCAGGTGTTGGTGGTAAATCAGTCAGTTTTGCCATG
CCCTTGAGTGTGCCTGGTGGTTGGAAAACAAAAAAGAACCATGAATCTTG
GGCAAGAAGTGACACACATACCCCGTTGGTGAGGCAAGTTTGTACCACTT
TGACAGAAGCCGCAAAGAAGCACAAGCTCAAACTTATCGATTACATGAGC
TTGGATGTACAGGGTCATGAATTAAACGTGCTCAAAGGAATTGACTGGGA
ACATCTGATAATCAATGTCATGACGGTTGAAATCACGTCTGAATCTATCG
AGGCGATTCAAACCTTCATGGTTTCGAAAGAATACAAAAGGCATTATCCG
GACAGTGAACCCAATGGAATGCAGTCAGAATATGTCATATTTCTTCACAA
GAAGGTTGAGTGGGGCAGGCCAAGATAG