Gchil11014.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil11014.t1
Unique NameGchil11014.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000021_piloncontigtig00000021_pilon:509181..511231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_08509T0
Preferred nameGRX3
PFAMsGlutaredoxin,Thioredoxin
Max annot lvl4751|Fungi
GOsGO:0001085,GO:0001102,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010467,GO:0010604,GO:0010638,GO:0015036,GO:0015037,GO:0015038,GO:0016043,GO:0016226,GO:0016491,GO:0016667,GO:0019222,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030029,GO:0030036,GO:0031056,GO:0031058,GO:0031063,GO:0031065,GO:0031163,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0033613,GO:0034599,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044572,GO:0045185,GO:0046916,GO:0048037,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051220,GO:0051235,GO:0051246,GO:0051247,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090311,GO:0090312,GO:0098771,GO:1901564,GO:1902275,GO:1903025,GO:1903026,GO:1905269,GO:2000677,GO:2000678,GO:2001252
Evalue3.33e-47
EggNOG OGsCOG0278@1|root,KOG0911@2759|Eukaryota,38BF9@33154|Opisthokonta,3NXX9@4751|Fungi
DescriptionMonothiol
COG categoryO
BiGG ReactioniMM904.YER174C
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil11014Gchil11014Gracilaria chilensis NLEC103_M9 malegenetig00000021_pilon 509181..511231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11014.t1Gchil11014.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000021_pilon 509181..511231 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11014.t1.start1Gchil11014.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000021_pilon 509181..509183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11014.t1.CDS1Gchil11014.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 509181..509261 +
Gchil11014.t1.CDS2Gchil11014.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 509357..510325 +
Gchil11014.t1.CDS3Gchil11014.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 511069..511089 +
Gchil11014.t1.CDS4Gchil11014.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 511163..511231 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11014.t1.exon1Gchil11014.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 509181..509261 +
Gchil11014.t1.exon2Gchil11014.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 509357..510325 +
Gchil11014.t1.exon3Gchil11014.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 511069..511089 +
Gchil11014.t1.exon4Gchil11014.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 511163..511231 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11014.t1.intron1Gchil11014.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000021_pilon 509262..509356 +
Gchil11014.t1.intron2Gchil11014.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000021_pilon 510326..511068 +
Gchil11014.t1.intron3Gchil11014.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000021_pilon 511090..511162 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11014.t1.stop1Gchil11014.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000021_pilon 511229..511231 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil11014.t1 ID=Gchil11014.t1|Name=Gchil11014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=380bp
MDQQKSAGKSHGVHAICTDQQLDSLISSGVRMAVNCWAPWAAPCHQMNAV
FDTLQQQHATRVADVVVDELVSLVFASMQPEKLPAAMKRFNIGTVPTFLL
FANRRLVRRSSGADAALLADNLGWLAQSSDAALLNGACDVVSSLDEITVV
MKGTADEPKCAFSRQAVQVLRSAGVHFATFNVLEDEQVRSAMKERFEWAT
FPMLFCRGKLVGGIDLMRDLADEGKLVEHLSGGERGEGAQEEEGVGSAAK
SGSADGEAALEKKSVEVNGDVGRDGGEHESQEQQQGKKEEEGMRTEVRER
LTRLVSGSEVMLFMKGSPTAPRCGFSRRIVEILREEAVQYEHFDILTDNE
TATNLCEMTHFAGACRRARWDRVTAATLW*
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spliced messenger RNA

>Gchil11014.t1 ID=Gchil11014.t1|Name=Gchil11014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000021_pilon:509181..511231+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAGCAGAAAAGTGCTGGCAAAAGCCACGGAGTGCACGCTATATG
CACGGATCAGCAGCTGGACTCGCTCATCTCGAGCGGGGTCCGCATGGCGG
TGAACTGCTGGGCGCCATGGGCGGCACCGTGCCATCAGATGAACGCGGTG
TTTGACACGCTGCAGCAGCAGCACGCGACGCGAGTAGCCGATGTAGTGGT
GGATGAGCTGGTATCACTGGTTTTTGCGTCGATGCAACCGGAGAAACTGC
CAGCGGCCATGAAGCGCTTCAATATTGGGACGGTGCCGACGTTTCTACTG
TTTGCCAACCGGCGATTGGTGCGACGCAGCTCGGGCGCGGACGCGGCGCT
GCTGGCGGACAATTTGGGCTGGCTAGCGCAGAGCTCGGACGCGGCGCTGC
TGAACGGCGCTTGTGACGTGGTAAGCTCACTGGACGAAATCACGGTTGTG
ATGAAGGGGACGGCGGACGAGCCCAAGTGCGCATTTAGCCGACAGGCGGT
GCAAGTGTTGCGCTCGGCCGGGGTTCATTTTGCTACGTTTAATGTGTTGG
AGGACGAGCAGGTGCGCAGTGCGATGAAGGAACGGTTTGAGTGGGCGACG
TTTCCTATGCTGTTTTGCAGGGGCAAGCTGGTGGGTGGGATTGACCTGAT
GCGTGACTTGGCGGACGAGGGGAAGCTGGTGGAACATCTGTCGGGCGGGG
AACGGGGCGAGGGCGCGCAGGAGGAAGAGGGGGTTGGTAGCGCAGCGAAA
AGCGGCAGCGCGGACGGGGAGGCGGCATTGGAAAAGAAAAGTGTCGAGGT
GAATGGGGACGTTGGACGGGACGGGGGCGAACATGAATCGCAAGAGCAGC
AGCAGGGAAAGAAAGAGGAGGAGGGCATGCGGACGGAGGTGCGCGAGCGG
CTGACGAGGCTGGTGAGCGGCAGCGAGGTAATGTTGTTCATGAAAGGAAG
TCCAACGGCGCCTCGTTGTGGATTTTCTCGGCGAATTGTGGAAATTCTGC
GAGAAGAGGCGGTGCAGTATGAGCATTTTGACATCCTGACGGACAATGAG
ACGGCCACCAACTTGTGCGAGATGACCCATTTCGCGGGTGCGTGTCGTCG
CGCTCGGTGGGACCGCGTCACAGCGGCGACTTTGTGGTGA
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protein sequence of Gchil11014.t1

>Gchil11014.t1 ID=Gchil11014.t1|Name=Gchil11014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=380bp
MDQQKSAGKSHGVHAICTDQQLDSLISSGVRMAVNCWAPWAAPCHQMNAV
FDTLQQQHATRVADVVVDELVSLVFASMQPEKLPAAMKRFNIGTVPTFLL
FANRRLVRRSSGADAALLADNLGWLAQSSDAALLNGACDVVSSLDEITVV
MKGTADEPKCAFSRQAVQVLRSAGVHFATFNVLEDEQVRSAMKERFEWAT
FPMLFCRGKLVGGIDLMRDLADEGKLVEHLSGGERGEGAQEEEGVGSAAK
SGSADGEAALEKKSVEVNGDVGRDGGEHESQEQQQGKKEEEGMRTEVRER
LTRLVSGSEVMLFMKGSPTAPRCGFSRRIVEILREEAVQYEHFDILTDNE
TATNLCEMTHFAGACRRARWDRVTAATLW*
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mRNA from alignment at tig00000021_pilon:509181..511231+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil11014.t1 ID=Gchil11014.t1|Name=Gchil11014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2051bp|location=Sequence derived from alignment at tig00000021_pilon:509181..511231+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCAGCAGAAAAGTGCTGGCAAAAGCCACGGAGTGCACGCTATATG
CACGGATCAGCAGCTGGACTCGCTCATCTCGGTAAGTGACCCGCTTTGGT
GCTCGTACGGCGGCATGCTTCGAGCGCTTTTTCAGCGCGCTGACGGTCGC
GGTTTGTGTTTGTTGCGCGCGCGCAGAGCGGGGTCCGCATGGCGGTGAAC
TGCTGGGCGCCATGGGCGGCACCGTGCCATCAGATGAACGCGGTGTTTGA
CACGCTGCAGCAGCAGCACGCGACGCGAGTAGCCGATGTAGTGGTGGATG
AGCTGGTATCACTGGTTTTTGCGTCGATGCAACCGGAGAAACTGCCAGCG
GCCATGAAGCGCTTCAATATTGGGACGGTGCCGACGTTTCTACTGTTTGC
CAACCGGCGATTGGTGCGACGCAGCTCGGGCGCGGACGCGGCGCTGCTGG
CGGACAATTTGGGCTGGCTAGCGCAGAGCTCGGACGCGGCGCTGCTGAAC
GGCGCTTGTGACGTGGTAAGCTCACTGGACGAAATCACGGTTGTGATGAA
GGGGACGGCGGACGAGCCCAAGTGCGCATTTAGCCGACAGGCGGTGCAAG
TGTTGCGCTCGGCCGGGGTTCATTTTGCTACGTTTAATGTGTTGGAGGAC
GAGCAGGTGCGCAGTGCGATGAAGGAACGGTTTGAGTGGGCGACGTTTCC
TATGCTGTTTTGCAGGGGCAAGCTGGTGGGTGGGATTGACCTGATGCGTG
ACTTGGCGGACGAGGGGAAGCTGGTGGAACATCTGTCGGGCGGGGAACGG
GGCGAGGGCGCGCAGGAGGAAGAGGGGGTTGGTAGCGCAGCGAAAAGCGG
CAGCGCGGACGGGGAGGCGGCATTGGAAAAGAAAAGTGTCGAGGTGAATG
GGGACGTTGGACGGGACGGGGGCGAACATGAATCGCAAGAGCAGCAGCAG
GGAAAGAAAGAGGAGGAGGGCATGCGGACGGAGGTGCGCGAGCGGCTGAC
GAGGCTGGTGAGCGGCAGCGAGGTAATGTTGTTCATGAAAGGAAGTCCAA
CGGCGCCTCGTTGTGGATTTTCTCGGCGAATTGTGGAAATTCTGCGAGAA
GAGGCGGTGCAGTATGAGCATTTTGACATCCTGACGGACAATGAGGTGCG
ACAGGGGCTGAAGAAGATGTGGGAGTGGCCGACGTACCCGCAGCTGTACG
CGCACGGCAAGCTGGTTGGCGGGCTGGACATTGTGAAGGAGCTAGTGCAG
TGCGGCGAGCTGAAGCGCGAGCTGGCGGGGTGAGGGCGGCGCGGGGGCAG
TGCGGCGCGGGGGCAGTGCGGCGCGGGGATGACGGCTTGTGGAGAGAGAG
AGAGCGTGGCACGGCGCGCACCGGTGCATTGCGCGTCATCATGGATGGCG
TCGTTAGGTGACGCTGCTGCGGCCCGTTGAAAGTTGAAAAAAGAAACGGC
CGCCGCGAGCGGCTTTGTTGTTGACACGCCAAGGTAACCATCGTTACGAC
GCTTGGCGCGGCGCTCAGCTGTCTTGTTCGCGGCGCCCAACTGCTCGAGC
TCCTTTTCCTATGGCGGTGCCTGGCGTGCTTGGCGACTACATTGCCAAGA
ATTACAAGCGTTTGCTGGTGTGCGTAGCgcctccgtcgtcgccgcgtggc
gacggcgatgcggagctcacgtcgcactcttctcccccgccatcgccacc
gccgccgtcttcaccgccgtcgtcttcaccgccgtcgtcgtcaccgccgc
cgtctccaccgccgccgccgtctccaccgccgccgccgtcgccgccgcgg
cgccgacgcaggaccgctggcgccgcgcgctcCAGACGTGCGCGGCGTCG
ACAGCACTCGCCGCCGCCGCGCGTGCTTTGCGAGCTAGACGGCCACCAAC
TTGTGCGAGGTATGTTGAGTTTGTTTTTCTTGTTGATGGGGAGTTAAAGT
ACTGACGGGATGCGGCGCGCATTTGGTTACAGATGACCCATTTCGCGGGT
GCGTGTCGTCGCGCTCGGTGGGACCGCGTCACAGCGGCGACTTTGTGGTG
A
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Coding sequence (CDS) from alignment at tig00000021_pilon:509181..511231+

>Gchil11014.t1 ID=Gchil11014.t1|Name=Gchil11014.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000021_pilon:509181..511231+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCAGCAGAAAAGTGCTGGCAAAAGCCACGGAGTGCACGCTATATG
CACGGATCAGCAGCTGGACTCGCTCATCTCGAGCGGGGTCCGCATGGCGG
TGAACTGCTGGGCGCCATGGGCGGCACCGTGCCATCAGATGAACGCGGTG
TTTGACACGCTGCAGCAGCAGCACGCGACGCGAGTAGCCGATGTAGTGGT
GGATGAGCTGGTATCACTGGTTTTTGCGTCGATGCAACCGGAGAAACTGC
CAGCGGCCATGAAGCGCTTCAATATTGGGACGGTGCCGACGTTTCTACTG
TTTGCCAACCGGCGATTGGTGCGACGCAGCTCGGGCGCGGACGCGGCGCT
GCTGGCGGACAATTTGGGCTGGCTAGCGCAGAGCTCGGACGCGGCGCTGC
TGAACGGCGCTTGTGACGTGGTAAGCTCACTGGACGAAATCACGGTTGTG
ATGAAGGGGACGGCGGACGAGCCCAAGTGCGCATTTAGCCGACAGGCGGT
GCAAGTGTTGCGCTCGGCCGGGGTTCATTTTGCTACGTTTAATGTGTTGG
AGGACGAGCAGGTGCGCAGTGCGATGAAGGAACGGTTTGAGTGGGCGACG
TTTCCTATGCTGTTTTGCAGGGGCAAGCTGGTGGGTGGGATTGACCTGAT
GCGTGACTTGGCGGACGAGGGGAAGCTGGTGGAACATCTGTCGGGCGGGG
AACGGGGCGAGGGCGCGCAGGAGGAAGAGGGGGTTGGTAGCGCAGCGAAA
AGCGGCAGCGCGGACGGGGAGGCGGCATTGGAAAAGAAAAGTGTCGAGGT
GAATGGGGACGTTGGACGGGACGGGGGCGAACATGAATCGCAAGAGCAGC
AGCAGGGAAAGAAAGAGGAGGAGGGCATGCGGACGGAGGTGCGCGAGCGG
CTGACGAGGCTGGTGAGCGGCAGCGAGGTAATGTTGTTCATGAAAGGAAG
TCCAACGGCGCCTCGTTGTGGATTTTCTCGGCGAATTGTGGAAATTCTGC
GAGAAGAGGCGGTGCAGTATGAGCATTTTGACATCCTGACGGACAATGAG
ACGGCCACCAACTTGTGCGAGATGACCCATTTCGCGGGTGCGTGTCGTCG
CGCTCGGTGGGACCGCGTCACAGCGGCGACTTTGTGGTGA
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