Gchil10999.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10999.t1
Unique NameGchil10999.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000021_piloncontigtig00000021_pilon:153958..154873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5022.CBX93231
PFAMszf-C2H2
Max annot lvl4751|Fungi
GOsGO:0000122,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006873,GO:0006875,GO:0006882,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0019725,GO:0030003,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0033554,GO:0034224,GO:0034225,GO:0042592,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0043618,GO:0043620,GO:0044212,GO:0044424,GO:0044464,GO:0045892,GO:0045934,GO:0046916,GO:0048519,GO:0048523,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0065007,GO:0065008,GO:0071496,GO:0072503,GO:0072507,GO:0080090,GO:0097159,GO:0098771,GO:0120127,GO:0140110,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
Evalue9.49e-11
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,3A8AT@33154|Opisthokonta,3P6RV@4751|Fungi,3QJJR@4890|Ascomycota,201RJ@147541|Dothideomycetes,4KCCS@92860|Pleosporales
DescriptionZinc finger, C2H2 type
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10999Gchil10999Gracilaria chilensis NLEC103_M9 malegenetig00000021_pilon 153958..154873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10999.t1Gchil10999.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000021_pilon 153958..154873 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10999.t1.start1Gchil10999.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000021_pilon 153958..153960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10999.t1.CDS1Gchil10999.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 153958..154062 +
Gchil10999.t1.CDS2Gchil10999.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 154154..154873 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10999.t1.exon1Gchil10999.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 153958..154062 +
Gchil10999.t1.exon2Gchil10999.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 154154..154873 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10999.t1.intron1Gchil10999.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000021_pilon 154063..154153 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10999.t1.stop1Gchil10999.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000021_pilon 154871..154873 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10999.t1 ID=Gchil10999.t1|Name=Gchil10999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=275bp
MNGVHQLQQHAELQAALQSTLSHPTAGNVCPVCRKAFDRMYNLKVHFRKH
TGETPYTCPVQNCAKQFRWRSSMAHHVRAHHDASETAGVSLRTSTDAQGA
KGNAKAQTPSVVTRPLRTTSSISQVSGIQKPQRKRTPKVSKAAKRRQSVS
SPSALQDSVNGLHAEPESPPLLTISADPLRLADECHSNDAELLCILPDVL
SGESDILDDSDEMGSSVPSTFADDPLEESADVMLFLVTGPEDVENAALKV
LDGDESLKAAVEATNLPMNQYSWM*
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spliced messenger RNA

>Gchil10999.t1 ID=Gchil10999.t1|Name=Gchil10999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000021_pilon:153958..154873+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGGGTGCACCAACTTCAGCAGCACGCAGAACTACAAGCTGCTCT
TCAGTCTACATTATCTCATCCCACTGCTGGAAACGTATGTCCGGTTTGTC
GTAAGGCGTTCGACCGCATGTATAACCTGAAAGTTCACTTTCGAAAACAC
ACAGGAGAGACGCCGTATACATGTCCTGTTCAAAACTGCGCAAAACAGTT
TCGATGGAGAAGTTCGATGGCGCATCACGTGCGCGCGCACCATGATGCGA
GTGAGACAGCAGGCGTGAGCCTTCGCACCTCAACAGATGCACAGGGTGCC
AAAGGAAATGCCAAAGCTCAGACGCCTTCAGTCGTAACGAGGCCGTTGCG
CACCACGAGTTCCATTTCACAAGTGAGTGGGATACAGAAACCGCAGCGTA
AGAGAACTCCAAAAGTATCAAAAGCAGCCAAGAGGCGACAGTCCGTAAGC
TCTCCTTCGGCGCTTCAAGACTCCGTTAATGGATTGCATGCAGAACCAGA
ATCTCCACCGCTGCTCACCATATCTGCAGATCCTCTTAGGCTCGCCGACG
AATGCCACTCGAACGACGCAGAACTTCTGTGTATTCTCCCGGATGTGTTA
TCCGGAGAGAGTGATATTCTAGATGACTCGGACGAGATGGGTTCCTCAGT
TCCATCCACGTTTGCGGACGACCCTCTCGAAGAATCGGCAGATGTGATGC
TATTCTTGGTGACAGGGCCGGAGGATGTGGAGAACGCGGCATTAAAGGTC
TTGGATGGAGATGAATCGCTCAAAGCAGCTGTGGAAGCTACAAATCTTCC
GATGAACCAGTATAGCTGGATGTGA
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protein sequence of Gchil10999.t1

>Gchil10999.t1 ID=Gchil10999.t1|Name=Gchil10999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=275bp
MNGVHQLQQHAELQAALQSTLSHPTAGNVCPVCRKAFDRMYNLKVHFRKH
TGETPYTCPVQNCAKQFRWRSSMAHHVRAHHDASETAGVSLRTSTDAQGA
KGNAKAQTPSVVTRPLRTTSSISQVSGIQKPQRKRTPKVSKAAKRRQSVS
SPSALQDSVNGLHAEPESPPLLTISADPLRLADECHSNDAELLCILPDVL
SGESDILDDSDEMGSSVPSTFADDPLEESADVMLFLVTGPEDVENAALKV
LDGDESLKAAVEATNLPMNQYSWM*
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mRNA from alignment at tig00000021_pilon:153958..154873+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10999.t1 ID=Gchil10999.t1|Name=Gchil10999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=916bp|location=Sequence derived from alignment at tig00000021_pilon:153958..154873+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGGGGTGCACCAACTTCAGCAGCACGCAGAACTACAAGCTGCTCT
TCAGTCTACATTATCTCATCCCACTGCTGGAAACGTATGTCCGGTTTGTC
GTAAGGTAAGTCTGTACTCAATTCATCACGCCAATTCCCAGTCAATCGAA
TACTGACGACCAAGCTCGGTCCTATGCTCATTTGTTTTCGGCGAAGGCGT
TCGACCGCATGTATAACCTGAAAGTTCACTTTCGAAAACACACAGGAGAG
ACGCCGTATACATGTCCTGTTCAAAACTGCGCAAAACAGTTTCGATGGAG
AAGTTCGATGGCGCATCACGTGCGCGCGCACCATGATGCGAGTGAGACAG
CAGGCGTGAGCCTTCGCACCTCAACAGATGCACAGGGTGCCAAAGGAAAT
GCCAAAGCTCAGACGCCTTCAGTCGTAACGAGGCCGTTGCGCACCACGAG
TTCCATTTCACAAGTGAGTGGGATACAGAAACCGCAGCGTAAGAGAACTC
CAAAAGTATCAAAAGCAGCCAAGAGGCGACAGTCCGTAAGCTCTCCTTCG
GCGCTTCAAGACTCCGTTAATGGATTGCATGCAGAACCAGAATCTCCACC
GCTGCTCACCATATCTGCAGATCCTCTTAGGCTCGCCGACGAATGCCACT
CGAACGACGCAGAACTTCTGTGTATTCTCCCGGATGTGTTATCCGGAGAG
AGTGATATTCTAGATGACTCGGACGAGATGGGTTCCTCAGTTCCATCCAC
GTTTGCGGACGACCCTCTCGAAGAATCGGCAGATGTGATGCTATTCTTGG
TGACAGGGCCGGAGGATGTGGAGAACGCGGCATTAAAGGTCTTGGATGGA
GATGAATCGCTCAAAGCAGCTGTGGAAGCTACAAATCTTCCGATGAACCA
GTATAGCTGGATGTGA
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Coding sequence (CDS) from alignment at tig00000021_pilon:153958..154873+

>Gchil10999.t1 ID=Gchil10999.t1|Name=Gchil10999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=825bp|location=Sequence derived from alignment at tig00000021_pilon:153958..154873+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGGGGTGCACCAACTTCAGCAGCACGCAGAACTACAAGCTGCTCT
TCAGTCTACATTATCTCATCCCACTGCTGGAAACGTATGTCCGGTTTGTC
GTAAGGCGTTCGACCGCATGTATAACCTGAAAGTTCACTTTCGAAAACAC
ACAGGAGAGACGCCGTATACATGTCCTGTTCAAAACTGCGCAAAACAGTT
TCGATGGAGAAGTTCGATGGCGCATCACGTGCGCGCGCACCATGATGCGA
GTGAGACAGCAGGCGTGAGCCTTCGCACCTCAACAGATGCACAGGGTGCC
AAAGGAAATGCCAAAGCTCAGACGCCTTCAGTCGTAACGAGGCCGTTGCG
CACCACGAGTTCCATTTCACAAGTGAGTGGGATACAGAAACCGCAGCGTA
AGAGAACTCCAAAAGTATCAAAAGCAGCCAAGAGGCGACAGTCCGTAAGC
TCTCCTTCGGCGCTTCAAGACTCCGTTAATGGATTGCATGCAGAACCAGA
ATCTCCACCGCTGCTCACCATATCTGCAGATCCTCTTAGGCTCGCCGACG
AATGCCACTCGAACGACGCAGAACTTCTGTGTATTCTCCCGGATGTGTTA
TCCGGAGAGAGTGATATTCTAGATGACTCGGACGAGATGGGTTCCTCAGT
TCCATCCACGTTTGCGGACGACCCTCTCGAAGAATCGGCAGATGTGATGC
TATTCTTGGTGACAGGGCCGGAGGATGTGGAGAACGCGGCATTAAAGGTC
TTGGATGGAGATGAATCGCTCAAAGCAGCTGTGGAAGCTACAAATCTTCC
GATGAACCAGTATAGCTGGATGTGA
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