Gchil10939.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10939.t1
Unique NameGchil10939.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004424_piloncontigtig00004424_pilon:73242..73724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10939Gchil10939Gracilaria chilensis NLEC103_M9 malegenetig00004424_pilon 73242..73724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10939.t1Gchil10939.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004424_pilon 73242..73724 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10939.t1.stop1Gchil10939.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004424_pilon 73242..73244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10939.t1.CDS1Gchil10939.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004424_pilon 73242..73245 -
Gchil10939.t1.CDS2Gchil10939.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004424_pilon 73341..73348 -
Gchil10939.t1.CDS3Gchil10939.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004424_pilon 73419..73724 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10939.t1.exon1Gchil10939.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004424_pilon 73242..73245 -
Gchil10939.t1.exon2Gchil10939.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004424_pilon 73341..73348 -
Gchil10939.t1.exon3Gchil10939.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004424_pilon 73419..73724 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10939.t1.intron1Gchil10939.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004424_pilon 73246..73340 -
Gchil10939.t1.intron2Gchil10939.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004424_pilon 73349..73418 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10939.t1.start1Gchil10939.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004424_pilon 73722..73724 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10939.t1 ID=Gchil10939.t1|Name=Gchil10939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=106bp
MQGMHPSNLAQTGAGVYPVRSMQGVPEAQAQAGFCQQIRDAQQAQAQAHH
QSQQLLAQQIRHRQMVQAYQMLLQRQQEQQRPQNLQNQQQAQPGVQAGGQ
ASVER*
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spliced messenger RNA

>Gchil10939.t1 ID=Gchil10939.t1|Name=Gchil10939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00004424_pilon:73242..73724- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGGCATGCACCCCAGCAATCTTGCGCAGACCGGGGCGGGCGTCTA
TCCGGTGCGAAGTATGCAAGGCGTACCGGAAGCACAGGCACAAGCTGGTT
TTTGTCAACAAATACGTGATGCACAACAGGCACAGGCACAGGCTCATCAC
CAAAGCCAACAACTGCTTGCTCAGCAGATACGCCATCGTCAAATGGTACA
GGCCTACCAAATGCTGCTGCAACGCCAACAGGAACAACAGCGGCCGCAAA
ATCTGCAAAACCAGCAGCAAGCGCAGCCAGGCGTGCAAGCTGGTGGACAA
GCCAGCGTGGAAAGATGA
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protein sequence of Gchil10939.t1

>Gchil10939.t1 ID=Gchil10939.t1|Name=Gchil10939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=106bp
MQGMHPSNLAQTGAGVYPVRSMQGVPEAQAQAGFCQQIRDAQQAQAQAHH
QSQQLLAQQIRHRQMVQAYQMLLQRQQEQQRPQNLQNQQQAQPGVQAGGQ
ASVER*
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mRNA from alignment at tig00004424_pilon:73242..73724-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10939.t1 ID=Gchil10939.t1|Name=Gchil10939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00004424_pilon:73242..73724- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGGCATGCACCCCAGCAATCTTGCGCAGACCGGGGCGGGCGTCTA
TCCGGTGCGAAGTATGCAAGGCGTACCGGAAGCACAGGCACAAGCTGGTT
TTTGTCAACAAATACGTGATGCACAACAGGCACAGGCACAGGCTCATCAC
CAAAGCCAACAACTGCTTGCTCAGCAGATACGCCATCGTCAAATGGTACA
GGCCTACCAAATGCTGCTGCAACGCCAACAGGAACAACAGCGGCCGCAAA
ATCTGCAAAACCAGCAGCAAGCGCAGCCAGGCGTGCAAGCTGGTGGACAA
GCCAGCGTCCCGAGTAGAGGACAAGAGCCTCCGAAGGAGACCAGTGCTGC
ATCGAAACGTCAGCGATCTAATGTAGGTGGAAAGGTATGTTTTTTCATCT
TTCACACGTCTCCTCACGATTCAGTGCGACTAACATACATACCATGGTCA
CATTTCTTATTTTCTGCCATCAATGTCAGATGA
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Coding sequence (CDS) from alignment at tig00004424_pilon:73242..73724-

>Gchil10939.t1 ID=Gchil10939.t1|Name=Gchil10939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00004424_pilon:73242..73724- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGGCATGCACCCCAGCAATCTTGCGCAGACCGGGGCGGGCGTCTA
TCCGGTGCGAAGTATGCAAGGCGTACCGGAAGCACAGGCACAAGCTGGTT
TTTGTCAACAAATACGTGATGCACAACAGGCACAGGCACAGGCTCATCAC
CAAAGCCAACAACTGCTTGCTCAGCAGATACGCCATCGTCAAATGGTACA
GGCCTACCAAATGCTGCTGCAACGCCAACAGGAACAACAGCGGCCGCAAA
ATCTGCAAAACCAGCAGCAAGCGCAGCCAGGCGTGCAAGCTGGTGGACAA
GCCAGCGTGGAAAGATGA
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