Gchil1083.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1083.t1
Unique NameGchil1083.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length509
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:977053..978579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1083Gchil1083Gracilaria chilensis NLEC103_M9 malegenetig00000172_pilon 977053..978579 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1083.t1.stop1Gchil1083.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000172_pilon 977053..977055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1083.t1.CDS1Gchil1083.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000172_pilon 977053..978579 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1083.t1.exon1Gchil1083.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000172_pilon 977053..978579 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1083.t1.start1Gchil1083.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000172_pilon 978577..978579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1083.t1Gchil1083.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000172_pilon 977053..978579 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1083.t1 ID=Gchil1083.t1|Name=Gchil1083.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=509bp
MTELVLRPLQELFKDDIVHRAALAAVVRGNAVGVRTAPIFLRAIGIPNVI
SGRRGSLVISQGVRIGLMIFFIFSLALFERSVNQIRVPILSKVSTTSLLH
VDSLSDIEGRVTLMSPFPAFGLNEEEAVNISSFSPTGTNSNQSYIVREKS
NLASKYISSCVRQINDTYTVAYVGAVAKTKGTQTIQCLDGSGGSDKRTAG
EFFSDTILAGANITAVSLSRIKNDDGFSTDGVTGVYAAKVVDDRNLIYEG
YIAITLRSHFDANVEWSMYGLVRDEGPFVYRVAMRLYKRGATVAAYPCFD
EAPSLKYIGNWSFNGTDYKCPDGVTRPMRRNPEEELQTIALKIFPVSNQV
STQRNGDLLAWITETDFARFAAAETFALEMRTRVRSDRMFYSQKEGENLI
VARGEFEEQITIGVWETVVLLVGIGTFLVSIGVSCFWKLYQRQKYRMDSD
VVSLDSIARMYCIENTGNNHPGNCLLNIGLSDIQQDAQHLGIVGSGIASV
RRPELALQ*
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spliced messenger RNA

>Gchil1083.t1 ID=Gchil1083.t1|Name=Gchil1083.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000172_pilon:977053..978579- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAACTTGTACTTCGTCCTTTACAAGAACTCTTCAAAGATGACAT
TGTCCACCGTGCCGCACTTGCTGCAGTTGTCCGCGGAAACGCCGTTGGTG
TTCGTACCGCGCCGATTTTTCTTCGAGCCATAGGCATTCCAAATGTCATC
AGTGGCCGACGAGGCAGCTTAGTCATATCCCAGGGAGTACGAATAGGGCT
CATGATCTTCTTTATTTTTTCGCTTGCACTGTTTGAGCGCTCGGTTAATC
AGATTCGAGTTCCAATACTTTCAAAAGTTTCGACCACTTCTCTCTTACAC
GTTGATTCTTTGTCTGACATCGAAGGTCGAGTTACACTTATGTCACCTTT
CCCGGCATTTGGCTTAAACGAAGAAGAAGCTGTAAACATAAGTTCTTTTT
CTCCTACGGGGACAAACTCCAATCAGAGTTACATCGTAAGAGAGAAATCG
AATCTTGCTTCCAAGTACATTTCTTCCTGTGTCAGACAGATCAATGACAC
ATACACCGTTGCGTATGTCGGCGCAGTGGCCAAAACTAAGGGCACTCAAA
CAATTCAATGCTTGGATGGCAGTGGTGGTTCTGACAAACGTACCGCGGGT
GAATTCTTTTCGGATACTATATTAGCAGGTGCCAACATCACTGCGGTTTC
TCTGTCTAGAATTAAAAATGATGATGGGTTCAGCACAGACGGGGTAACAG
GAGTTTATGCTGCGAAAGTGGTTGACGACAGGAATTTGATCTATGAAGGA
TATATTGCAATTACGCTACGATCTCACTTCGATGCCAATGTGGAGTGGTC
AATGTACGGCCTGGTTAGAGATGAGGGTCCCTTCGTCTATAGAGTCGCAA
TGCGCCTGTACAAGCGAGGTGCAACAGTCGCTGCTTATCCATGTTTTGAC
GAAGCCCCCTCCTTGAAGTACATTGGAAATTGGAGTTTTAATGGAACGGA
TTACAAGTGTCCAGATGGCGTCACACGCCCCATGAGACGAAACCCTGAAG
AGGAACTACAAACTATTGCTTTGAAAATTTTTCCAGTGAGCAATCAAGTG
AGCACGCAACGGAACGGCGACCTACTCGCATGGATTACTGAAACAGATTT
TGCGAGATTCGCAGCCGCTGAAACATTTGCGCTTGAGATGAGGACAAGGG
TACGTTCTGATCGCATGTTTTACTCCCAGAAAGAAGGAGAGAACTTAATT
GTGGCAAGGGGAGAATTTGAGGAACAGATTACGATCGGTGTCTGGGAAAC
GGTTGTTTTGTTGGTGGGCATTGGTACCTTTTTAGTTTCCATTGGTGTTT
CTTGTTTTTGGAAGCTTTACCAACGGCAAAAATACAGAATGGACTCAGAC
GTAGTAAGCTTGGACTCAATTGCGCGGATGTACTGTATAGAAAACACGGG
GAACAACCATCCGGGTAATTGCCTTTTGAATATCGGTCTCAGCGATATAC
AACAGGATGCACAGCATTTGGGAATTGTGGGGAGTGGAATTGCCAGCGTA
CGACGACCAGAGCTGGCTCTACAATAA
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protein sequence of Gchil1083.t1

>Gchil1083.t1 ID=Gchil1083.t1|Name=Gchil1083.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=509bp
MTELVLRPLQELFKDDIVHRAALAAVVRGNAVGVRTAPIFLRAIGIPNVI
SGRRGSLVISQGVRIGLMIFFIFSLALFERSVNQIRVPILSKVSTTSLLH
VDSLSDIEGRVTLMSPFPAFGLNEEEAVNISSFSPTGTNSNQSYIVREKS
NLASKYISSCVRQINDTYTVAYVGAVAKTKGTQTIQCLDGSGGSDKRTAG
EFFSDTILAGANITAVSLSRIKNDDGFSTDGVTGVYAAKVVDDRNLIYEG
YIAITLRSHFDANVEWSMYGLVRDEGPFVYRVAMRLYKRGATVAAYPCFD
EAPSLKYIGNWSFNGTDYKCPDGVTRPMRRNPEEELQTIALKIFPVSNQV
STQRNGDLLAWITETDFARFAAAETFALEMRTRVRSDRMFYSQKEGENLI
VARGEFEEQITIGVWETVVLLVGIGTFLVSIGVSCFWKLYQRQKYRMDSD
VVSLDSIARMYCIENTGNNHPGNCLLNIGLSDIQQDAQHLGIVGSGIASV
RRPELALQ*
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mRNA from alignment at tig00000172_pilon:977053..978579-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1083.t1 ID=Gchil1083.t1|Name=Gchil1083.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000172_pilon:977053..978579- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAACTTGTACTTCGTCCTTTACAAGAACTCTTCAAAGATGACAT
TGTCCACCGTGCCGCACTTGCTGCAGTTGTCCGCGGAAACGCCGTTGGTG
TTCGTACCGCGCCGATTTTTCTTCGAGCCATAGGCATTCCAAATGTCATC
AGTGGCCGACGAGGCAGCTTAGTCATATCCCAGGGAGTACGAATAGGGCT
CATGATCTTCTTTATTTTTTCGCTTGCACTGTTTGAGCGCTCGGTTAATC
AGATTCGAGTTCCAATACTTTCAAAAGTTTCGACCACTTCTCTCTTACAC
GTTGATTCTTTGTCTGACATCGAAGGTCGAGTTACACTTATGTCACCTTT
CCCGGCATTTGGCTTAAACGAAGAAGAAGCTGTAAACATAAGTTCTTTTT
CTCCTACGGGGACAAACTCCAATCAGAGTTACATCGTAAGAGAGAAATCG
AATCTTGCTTCCAAGTACATTTCTTCCTGTGTCAGACAGATCAATGACAC
ATACACCGTTGCGTATGTCGGCGCAGTGGCCAAAACTAAGGGCACTCAAA
CAATTCAATGCTTGGATGGCAGTGGTGGTTCTGACAAACGTACCGCGGGT
GAATTCTTTTCGGATACTATATTAGCAGGTGCCAACATCACTGCGGTTTC
TCTGTCTAGAATTAAAAATGATGATGGGTTCAGCACAGACGGGGTAACAG
GAGTTTATGCTGCGAAAGTGGTTGACGACAGGAATTTGATCTATGAAGGA
TATATTGCAATTACGCTACGATCTCACTTCGATGCCAATGTGGAGTGGTC
AATGTACGGCCTGGTTAGAGATGAGGGTCCCTTCGTCTATAGAGTCGCAA
TGCGCCTGTACAAGCGAGGTGCAACAGTCGCTGCTTATCCATGTTTTGAC
GAAGCCCCCTCCTTGAAGTACATTGGAAATTGGAGTTTTAATGGAACGGA
TTACAAGTGTCCAGATGGCGTCACACGCCCCATGAGACGAAACCCTGAAG
AGGAACTACAAACTATTGCTTTGAAAATTTTTCCAGTGAGCAATCAAGTG
AGCACGCAACGGAACGGCGACCTACTCGCATGGATTACTGAAACAGATTT
TGCGAGATTCGCAGCCGCTGAAACATTTGCGCTTGAGATGAGGACAAGGG
TACGTTCTGATCGCATGTTTTACTCCCAGAAAGAAGGAGAGAACTTAATT
GTGGCAAGGGGAGAATTTGAGGAACAGATTACGATCGGTGTCTGGGAAAC
GGTTGTTTTGTTGGTGGGCATTGGTACCTTTTTAGTTTCCATTGGTGTTT
CTTGTTTTTGGAAGCTTTACCAACGGCAAAAATACAGAATGGACTCAGAC
GTAGTAAGCTTGGACTCAATTGCGCGGATGTACTGTATAGAAAACACGGG
GAACAACCATCCGGGTAATTGCCTTTTGAATATCGGTCTCAGCGATATAC
AACAGGATGCACAGCATTTGGGAATTGTGGGGAGTGGAATTGCCAGCGTA
CGACGACCAGAGCTGGCTCTACAATAA
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Coding sequence (CDS) from alignment at tig00000172_pilon:977053..978579-

>Gchil1083.t1 ID=Gchil1083.t1|Name=Gchil1083.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00000172_pilon:977053..978579- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGAACTTGTACTTCGTCCTTTACAAGAACTCTTCAAAGATGACAT
TGTCCACCGTGCCGCACTTGCTGCAGTTGTCCGCGGAAACGCCGTTGGTG
TTCGTACCGCGCCGATTTTTCTTCGAGCCATAGGCATTCCAAATGTCATC
AGTGGCCGACGAGGCAGCTTAGTCATATCCCAGGGAGTACGAATAGGGCT
CATGATCTTCTTTATTTTTTCGCTTGCACTGTTTGAGCGCTCGGTTAATC
AGATTCGAGTTCCAATACTTTCAAAAGTTTCGACCACTTCTCTCTTACAC
GTTGATTCTTTGTCTGACATCGAAGGTCGAGTTACACTTATGTCACCTTT
CCCGGCATTTGGCTTAAACGAAGAAGAAGCTGTAAACATAAGTTCTTTTT
CTCCTACGGGGACAAACTCCAATCAGAGTTACATCGTAAGAGAGAAATCG
AATCTTGCTTCCAAGTACATTTCTTCCTGTGTCAGACAGATCAATGACAC
ATACACCGTTGCGTATGTCGGCGCAGTGGCCAAAACTAAGGGCACTCAAA
CAATTCAATGCTTGGATGGCAGTGGTGGTTCTGACAAACGTACCGCGGGT
GAATTCTTTTCGGATACTATATTAGCAGGTGCCAACATCACTGCGGTTTC
TCTGTCTAGAATTAAAAATGATGATGGGTTCAGCACAGACGGGGTAACAG
GAGTTTATGCTGCGAAAGTGGTTGACGACAGGAATTTGATCTATGAAGGA
TATATTGCAATTACGCTACGATCTCACTTCGATGCCAATGTGGAGTGGTC
AATGTACGGCCTGGTTAGAGATGAGGGTCCCTTCGTCTATAGAGTCGCAA
TGCGCCTGTACAAGCGAGGTGCAACAGTCGCTGCTTATCCATGTTTTGAC
GAAGCCCCCTCCTTGAAGTACATTGGAAATTGGAGTTTTAATGGAACGGA
TTACAAGTGTCCAGATGGCGTCACACGCCCCATGAGACGAAACCCTGAAG
AGGAACTACAAACTATTGCTTTGAAAATTTTTCCAGTGAGCAATCAAGTG
AGCACGCAACGGAACGGCGACCTACTCGCATGGATTACTGAAACAGATTT
TGCGAGATTCGCAGCCGCTGAAACATTTGCGCTTGAGATGAGGACAAGGG
TACGTTCTGATCGCATGTTTTACTCCCAGAAAGAAGGAGAGAACTTAATT
GTGGCAAGGGGAGAATTTGAGGAACAGATTACGATCGGTGTCTGGGAAAC
GGTTGTTTTGTTGGTGGGCATTGGTACCTTTTTAGTTTCCATTGGTGTTT
CTTGTTTTTGGAAGCTTTACCAACGGCAAAAATACAGAATGGACTCAGAC
GTAGTAAGCTTGGACTCAATTGCGCGGATGTACTGTATAGAAAACACGGG
GAACAACCATCCGGGTAATTGCCTTTTGAATATCGGTCTCAGCGATATAC
AACAGGATGCACAGCATTTGGGAATTGTGGGGAGTGGAATTGCCAGCGTA
CGACGACCAGAGCTGGCTCTACAATAA
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