Gchil1082.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1082.t1
Unique NameGchil1082.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:969312..970058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002946011.1
PFAMsPeptidase_C1
Max annot lvl2759|Eukaryota
Evalue3.2e-21
EggNOG OGsCOG4870@1|root,2S8PN@2759|Eukaryota
DescriptionBelongs to the peptidase C1 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1082Gchil1082Gracilaria chilensis NLEC103_M9 malegenetig00000172_pilon 969312..970058 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1082.t1.start1Gchil1082.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000172_pilon 969312..969314 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1082.t1.CDS1Gchil1082.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000172_pilon 969312..970058 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1082.t1.exon1Gchil1082.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000172_pilon 969312..970058 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1082.t1.stop1Gchil1082.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000172_pilon 970056..970058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1082.t1Gchil1082.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000172_pilon 969312..970058 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1082.t1 ID=Gchil1082.t1|Name=Gchil1082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=249bp
MISIKLIVAVFSMALYTLALSTAVLPRPDAVIDLPVVDIQESTLVIPLVR
QQQEEAVFAVNSSNTGFARTSQAGLTVQRGTSGTLTFAFTVNAIEAETLA
TLDQEFSSSLSVSEMEEYSRLRSEYQSGFGIPFLRWLGINLNNRRVTRDE
MERSFELRENYNTQSSIAQQVLSNVQQQQLQISGELTAFGTSFIPTTVFA
FIRIARLQTQDGMTLTVVSQSGDNLVAADAGGNTVPSSGGDIDIVPLF*
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spliced messenger RNA

>Gchil1082.t1 ID=Gchil1082.t1|Name=Gchil1082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000172_pilon:969312..970058+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTCCATTAAGCTCATCGTTGCTGTCTTCTCCATGGCGCTCTACAC
GCTTGCCTTATCTACCGCCGTTCTTCCGCGCCCTGATGCAGTCATTGATC
TTCCCGTCGTCGACATCCAGGAATCTACACTCGTCATTCCTCTCGTCCGT
CAGCAGCAAGAAGAGGCGGTATTTGCAGTTAATAGCTCGAACACAGGTTT
CGCTCGTACTTCCCAAGCCGGCCTAACCGTCCAGCGGGGCACCAGTGGTA
CCCTGACCTTCGCTTTCACTGTGAACGCCATCGAGGCCGAGACACTGGCT
ACTCTGGATCAGGAGTTCTCCAGCTCGCTCAGCGTGTCAGAAATGGAGGA
GTACAGCCGTCTGCGCTCCGAGTATCAGAGCGGCTTCGGGATTCCATTCC
TGAGGtggctcgggatcaacctcaacaaccgccgggtcactcgcgatgaa
atggagaggtcctttgagctgcgcgagaactacaacacgcagtccagcat
TGCTCAGCAAGTGCTCTCAAATGTACAGCAGCAGCAACTGCAAATCTCCG
GAGAGCTTACGGCCTTTGGCACCAGCTTCATCCCGACTACCGTCTTTGCG
TTCATCCGCATTGCCCGCCTTCAAACCCAGGACGGTATGACGCTCACAGT
GGTGTCACAGAGCGGTGACAACTTGGTTGCGGCCGATGCTGGTGGAAACA
CCGTGCCGTCCTCGGGTGGCGACATCGACATTGTTCCTCTTTTCTAA
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protein sequence of Gchil1082.t1

>Gchil1082.t1 ID=Gchil1082.t1|Name=Gchil1082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=249bp
MISIKLIVAVFSMALYTLALSTAVLPRPDAVIDLPVVDIQESTLVIPLVR
QQQEEAVFAVNSSNTGFARTSQAGLTVQRGTSGTLTFAFTVNAIEAETLA
TLDQEFSSSLSVSEMEEYSRLRSEYQSGFGIPFLRWLGINLNNRRVTRDE
MERSFELRENYNTQSSIAQQVLSNVQQQQLQISGELTAFGTSFIPTTVFA
FIRIARLQTQDGMTLTVVSQSGDNLVAADAGGNTVPSSGGDIDIVPLF*
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mRNA from alignment at tig00000172_pilon:969312..970058+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1082.t1 ID=Gchil1082.t1|Name=Gchil1082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=747bp|location=Sequence derived from alignment at tig00000172_pilon:969312..970058+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCTCCATTAAGCTCATCGTTGCTGTCTTCTCCATGGCGCTCTACAC
GCTTGCCTTATCTACCGCCGTTCTTCCGCGCCCTGATGCAGTCATTGATC
TTCCCGTCGTCGACATCCAGGAATCTACACTCGTCATTCCTCTCGTCCGT
CAGCAGCAAGAAGAGGCGGTATTTGCAGTTAATAGCTCGAACACAGGTTT
CGCTCGTACTTCCCAAGCCGGCCTAACCGTCCAGCGGGGCACCAGTGGTA
CCCTGACCTTCGCTTTCACTGTGAACGCCATCGAGGCCGAGACACTGGCT
ACTCTGGATCAGGAGTTCTCCAGCTCGCTCAGCGTGTCAGAAATGGAGGA
GTACAGCCGTCTGCGCTCCGAGTATCAGAGCGGCTTCGGGATTCCATTCC
TGAGGtggctcgggatcaacctcaacaaccgccgggtcactcgcgatgaa
atggagaggtcctttgagctgcgcgagaactacaacacgcagtccagcat
TGCTCAGCAAGTGCTCTCAAATGTACAGCAGCAGCAACTGCAAATCTCCG
GAGAGCTTACGGCCTTTGGCACCAGCTTCATCCCGACTACCGTCTTTGCG
TTCATCCGCATTGCCCGCCTTCAAACCCAGGACGGTATGACGCTCACAGT
GGTGTCACAGAGCGGTGACAACTTGGTTGCGGCCGATGCTGGTGGAAACA
CCGTGCCGTCCTCGGGTGGCGACATCGACATTGTTCCTCTTTTCTAA
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Coding sequence (CDS) from alignment at tig00000172_pilon:969312..970058+

>Gchil1082.t1 ID=Gchil1082.t1|Name=Gchil1082.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=747bp|location=Sequence derived from alignment at tig00000172_pilon:969312..970058+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCTCCATTAAGCTCATCGTTGCTGTCTTCTCCATGGCGCTCTACAC
GCTTGCCTTATCTACCGCCGTTCTTCCGCGCCCTGATGCAGTCATTGATC
TTCCCGTCGTCGACATCCAGGAATCTACACTCGTCATTCCTCTCGTCCGT
CAGCAGCAAGAAGAGGCGGTATTTGCAGTTAATAGCTCGAACACAGGTTT
CGCTCGTACTTCCCAAGCCGGCCTAACCGTCCAGCGGGGCACCAGTGGTA
CCCTGACCTTCGCTTTCACTGTGAACGCCATCGAGGCCGAGACACTGGCT
ACTCTGGATCAGGAGTTCTCCAGCTCGCTCAGCGTGTCAGAAATGGAGGA
GTACAGCCGTCTGCGCTCCGAGTATCAGAGCGGCTTCGGGATTCCATTCC
TGAGGtggctcgggatcaacctcaacaaccgccgggtcactcgcgatgaa
atggagaggtcctttgagctgcgcgagaactacaacacgcagtccagcat
TGCTCAGCAAGTGCTCTCAAATGTACAGCAGCAGCAACTGCAAATCTCCG
GAGAGCTTACGGCCTTTGGCACCAGCTTCATCCCGACTACCGTCTTTGCG
TTCATCCGCATTGCCCGCCTTCAAACCCAGGACGGTATGACGCTCACAGT
GGTGTCACAGAGCGGTGACAACTTGGTTGCGGCCGATGCTGGTGGAAACA
CCGTGCCGTCCTCGGGTGGCGACATCGACATTGTTCCTCTTTTCTAA
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