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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 45157.CMI099CT |
Preferred name | SKA1 |
PFAMs | SKA1 |
Max annot lvl | 2759|Eukaryota |
GOs | GO:0000278,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0000940,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0007049,GO:0007059,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0031110,GO:0032886,GO:0032991,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051301,GO:0051493,GO:0065007,GO:0070507,GO:0072686,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513 |
Evalue | 1.86e-15 |
EggNOG OGs | KOG4832@1|root,KOG4832@2759|Eukaryota |
Description | microtubule binding |
COG category | Z |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10584.t1 ID=Gchil10584.t1|Name=Gchil10584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=311bp MDTPICTKPSPIEEWNSNFNNQVSALRALLPVRSAGNGDAADEQVSTAFE AACKSLADVDQMFSTLKQYIQQEEAQLNQLKKLQSHIQRASSQMKFIEKQ MPEELQASLNATDRDQEGMPLSRPNSKDSEESNVLVNNTGNRPTKSMIER NSSLRGKKPPPAKSPIKTTSKTTKRRGGKSREEPISDPPQIRYVTQEELD EAPQYVKGRLSVEKISTVVDKFNVILEKKYTLLSRPFRELTSQEMSKYED LRDAFCPEVSGREFLTDSEIKGFGECRMDAAVKSVVNILRHVGAMKEIRG KNRTRIFIIN* back to topspliced messenger RNA >Gchil10584.t1 ID=Gchil10584.t1|Name=Gchil10584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000159_pilon:772349..773281+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGACACTCCTATCTGCACAAAACCTTCACCCATCGAGGAATGGAATTC CAACTTTAACAACCAAGTTTCTGCACTTCGCGCACTTCTTCCCGTGCGTT CTGCTGGAAATGGAGATGCAGCTGACGAGCAAGTGTCAACGGCTTTTGAA GCGGCTTGCAAATCGCTAGCAGACGTTGACCAAATGTTTTCCACATTGAA ACAATACATTCAACAGGAAGAAGCGCAACTGAATCAACTTAAAAAACTCC AAAGCCATATACAGAGAGCTTCTTCTCAGATGAAGTTCATAGAAAAACAA ATGCCGGAAGAACTGCAGGCTTCTCTCAATGCTACCGATCGTGATCAGGA AGGTATGCCTCTGTCCCGACCCAATTCGAAAGATTCCGAGGAAAGCAATG TGCTTGTCAACAACACGGGCAACCGCCCTACCAAGAGTATGATTGAAAGA AATTCCTCACTGCGGGGCAAGAAACCGCCGCCCGCTAAGAGCCCGATCAA AACAACATCGAAAACGACGAAACGACGCGGGGGAAAGTCGCGAGAAGAAC CAATCTCAGATCCACCGCAGATTCGATATGTGACGCAAGAAGAACTCGAT GAGGCACCGCAGTACGTCAAGGGACGCCTATCTGTCGAGAAGATCAGCAC GGTTGTTGACAAATTTAATGTTATTCTTGAAAAGAAATACACACTTCTAA GCAGACCGTTCCGAGAGCTCACTTCACAAGAAATGTCGAAGTATGAAGAT CTCCGGGATGCGTTTTGTCCAGAAGTAAGCGGTAGAGAATTTCTTACAGA TTCTGAAATCAAGGGCTTCGGAGAGTGTCGAATGGATGCCGCTGTAAAAT CTGTCGTCAATATCCTCCGACATGTTGGTGCGATGAAAGAAATTCGCGGG AAGAACAGGACCCGCATCTTCATCATCAACTAA back to topprotein sequence of Gchil10584.t1 >Gchil10584.t1 ID=Gchil10584.t1|Name=Gchil10584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=311bp
MDTPICTKPSPIEEWNSNFNNQVSALRALLPVRSAGNGDAADEQVSTAFE AACKSLADVDQMFSTLKQYIQQEEAQLNQLKKLQSHIQRASSQMKFIEKQ MPEELQASLNATDRDQEGMPLSRPNSKDSEESNVLVNNTGNRPTKSMIER NSSLRGKKPPPAKSPIKTTSKTTKRRGGKSREEPISDPPQIRYVTQEELD EAPQYVKGRLSVEKISTVVDKFNVILEKKYTLLSRPFRELTSQEMSKYED LRDAFCPEVSGREFLTDSEIKGFGECRMDAAVKSVVNILRHVGAMKEIRG KNRTRIFIIN* back to topmRNA from alignment at tig00000159_pilon:772349..773281+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10584.t1 ID=Gchil10584.t1|Name=Gchil10584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000159_pilon:772349..773281+ (Gracilaria chilensis NLEC103_M9 male) ATGGACACTCCTATCTGCACAAAACCTTCACCCATCGAGGAATGGAATTC
CAACTTTAACAACCAAGTTTCTGCACTTCGCGCACTTCTTCCCGTGCGTT
CTGCTGGAAATGGAGATGCAGCTGACGAGCAAGTGTCAACGGCTTTTGAA
GCGGCTTGCAAATCGCTAGCAGACGTTGACCAAATGTTTTCCACATTGAA
ACAATACATTCAACAGGAAGAAGCGCAACTGAATCAACTTAAAAAACTCC
AAAGCCATATACAGAGAGCTTCTTCTCAGATGAAGTTCATAGAAAAACAA
ATGCCGGAAGAACTGCAGGCTTCTCTCAATGCTACCGATCGTGATCAGGA
AGGTATGCCTCTGTCCCGACCCAATTCGAAAGATTCCGAGGAAAGCAATG
TGCTTGTCAACAACACGGGCAACCGCCCTACCAAGAGTATGATTGAAAGA
AATTCCTCACTGCGGGGCAAGAAACCGCCGCCCGCTAAGAGCCCGATCAA
AACAACATCGAAAACGACGAAACGACGCGGGGGAAAGTCGCGAGAAGAAC
CAATCTCAGATCCACCGCAGATTCGATATGTGACGCAAGAAGAACTCGAT
GAGGCACCGCAGTACGTCAAGGGACGCCTATCTGTCGAGAAGATCAGCAC
GGTTGTTGACAAATTTAATGTTATTCTTGAAAAGAAATACACACTTCTAA
GCAGACCGTTCCGAGAGCTCACTTCACAAGAAATGTCGAAGTATGAAGAT
CTCCGGGATGCGTTTTGTCCAGAAGTAAGCGGTAGAGAATTTCTTACAGA
TTCTGAAATCAAGGGCTTCGGAGAGTGTCGAATGGATGCCGCTGTAAAAT
CTGTCGTCAATATCCTCCGACATGTTGGTGCGATGAAAGAAATTCGCGGG
AAGAACAGGACCCGCATCTTCATCATCAACTAA back to topCoding sequence (CDS) from alignment at tig00000159_pilon:772349..773281+ >Gchil10584.t1 ID=Gchil10584.t1|Name=Gchil10584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00000159_pilon:772349..773281+ (Gracilaria chilensis NLEC103_M9 male) ATGGACACTCCTATCTGCACAAAACCTTCACCCATCGAGGAATGGAATTC CAACTTTAACAACCAAGTTTCTGCACTTCGCGCACTTCTTCCCGTGCGTT CTGCTGGAAATGGAGATGCAGCTGACGAGCAAGTGTCAACGGCTTTTGAA GCGGCTTGCAAATCGCTAGCAGACGTTGACCAAATGTTTTCCACATTGAA ACAATACATTCAACAGGAAGAAGCGCAACTGAATCAACTTAAAAAACTCC AAAGCCATATACAGAGAGCTTCTTCTCAGATGAAGTTCATAGAAAAACAA ATGCCGGAAGAACTGCAGGCTTCTCTCAATGCTACCGATCGTGATCAGGA AGGTATGCCTCTGTCCCGACCCAATTCGAAAGATTCCGAGGAAAGCAATG TGCTTGTCAACAACACGGGCAACCGCCCTACCAAGAGTATGATTGAAAGA AATTCCTCACTGCGGGGCAAGAAACCGCCGCCCGCTAAGAGCCCGATCAA AACAACATCGAAAACGACGAAACGACGCGGGGGAAAGTCGCGAGAAGAAC CAATCTCAGATCCACCGCAGATTCGATATGTGACGCAAGAAGAACTCGAT GAGGCACCGCAGTACGTCAAGGGACGCCTATCTGTCGAGAAGATCAGCAC GGTTGTTGACAAATTTAATGTTATTCTTGAAAAGAAATACACACTTCTAA GCAGACCGTTCCGAGAGCTCACTTCACAAGAAATGTCGAAGTATGAAGAT CTCCGGGATGCGTTTTGTCCAGAAGTAAGCGGTAGAGAATTTCTTACAGA TTCTGAAATCAAGGGCTTCGGAGAGTGTCGAATGGATGCCGCTGTAAAAT CTGTCGTCAATATCCTCCGACATGTTGGTGCGATGAAAGAAATTCGCGGG AAGAACAGGACCCGCATCTTCATCATCAACTAA back to top
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