Gchil10584.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10584.t1
Unique Name	Gchil10584.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	311

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000159_pilon	contig	tig00000159_pilon:772349..773281 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMI099CT
Preferred name	SKA1
PFAMs	SKA1
Max annot lvl	2759\|Eukaryota
GOs	GO:0000278,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0000940,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0007049,GO:0007059,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0031110,GO:0032886,GO:0032991,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051128,GO:0051301,GO:0051493,GO:0065007,GO:0070507,GO:0072686,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513
Evalue	1.86e-15
EggNOG OGs	KOG4832@1\|root,KOG4832@2759\|Eukaryota
Description	microtubule binding
COG category	Z

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10584	Gchil10584	Gracilaria chilensis NLEC103_M9 male	gene	tig00000159_pilon 772349..773281 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10584.t1.start1	Gchil10584.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000159_pilon 772349..772351 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10584.t1.CDS1	Gchil10584.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000159_pilon 772349..773281 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10584.t1.exon1	Gchil10584.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000159_pilon 772349..773281 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10584.t1.stop1	Gchil10584.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000159_pilon 773279..773281 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10584.t1	Gchil10584.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000159_pilon 772349..773281 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000159_pilon:772349..773281+
coding sequence from alignment at tig00000159_pilon:772349..773281+

mRNA sequence

>Gchil10584.t1 ID=Gchil10584.t1|Name=Gchil10584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=311bp
MDTPICTKPSPIEEWNSNFNNQVSALRALLPVRSAGNGDAADEQVSTAFE
AACKSLADVDQMFSTLKQYIQQEEAQLNQLKKLQSHIQRASSQMKFIEKQ
MPEELQASLNATDRDQEGMPLSRPNSKDSEESNVLVNNTGNRPTKSMIER
NSSLRGKKPPPAKSPIKTTSKTTKRRGGKSREEPISDPPQIRYVTQEELD
EAPQYVKGRLSVEKISTVVDKFNVILEKKYTLLSRPFRELTSQEMSKYED
LRDAFCPEVSGREFLTDSEIKGFGECRMDAAVKSVVNILRHVGAMKEIRG
KNRTRIFIIN*

spliced messenger RNA

>Gchil10584.t1 ID=Gchil10584.t1|Name=Gchil10584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000159_pilon:772349..773281+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACTCCTATCTGCACAAAACCTTCACCCATCGAGGAATGGAATTC
CAACTTTAACAACCAAGTTTCTGCACTTCGCGCACTTCTTCCCGTGCGTT
CTGCTGGAAATGGAGATGCAGCTGACGAGCAAGTGTCAACGGCTTTTGAA
GCGGCTTGCAAATCGCTAGCAGACGTTGACCAAATGTTTTCCACATTGAA
ACAATACATTCAACAGGAAGAAGCGCAACTGAATCAACTTAAAAAACTCC
AAAGCCATATACAGAGAGCTTCTTCTCAGATGAAGTTCATAGAAAAACAA
ATGCCGGAAGAACTGCAGGCTTCTCTCAATGCTACCGATCGTGATCAGGA
AGGTATGCCTCTGTCCCGACCCAATTCGAAAGATTCCGAGGAAAGCAATG
TGCTTGTCAACAACACGGGCAACCGCCCTACCAAGAGTATGATTGAAAGA
AATTCCTCACTGCGGGGCAAGAAACCGCCGCCCGCTAAGAGCCCGATCAA
AACAACATCGAAAACGACGAAACGACGCGGGGGAAAGTCGCGAGAAGAAC
CAATCTCAGATCCACCGCAGATTCGATATGTGACGCAAGAAGAACTCGAT
GAGGCACCGCAGTACGTCAAGGGACGCCTATCTGTCGAGAAGATCAGCAC
GGTTGTTGACAAATTTAATGTTATTCTTGAAAAGAAATACACACTTCTAA
GCAGACCGTTCCGAGAGCTCACTTCACAAGAAATGTCGAAGTATGAAGAT
CTCCGGGATGCGTTTTGTCCAGAAGTAAGCGGTAGAGAATTTCTTACAGA
TTCTGAAATCAAGGGCTTCGGAGAGTGTCGAATGGATGCCGCTGTAAAAT
CTGTCGTCAATATCCTCCGACATGTTGGTGCGATGAAAGAAATTCGCGGG
AAGAACAGGACCCGCATCTTCATCATCAACTAA

protein sequence of Gchil10584.t1

>Gchil10584.t1 ID=Gchil10584.t1|Name=Gchil10584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=311bp
MDTPICTKPSPIEEWNSNFNNQVSALRALLPVRSAGNGDAADEQVSTAFE
AACKSLADVDQMFSTLKQYIQQEEAQLNQLKKLQSHIQRASSQMKFIEKQ
MPEELQASLNATDRDQEGMPLSRPNSKDSEESNVLVNNTGNRPTKSMIER
NSSLRGKKPPPAKSPIKTTSKTTKRRGGKSREEPISDPPQIRYVTQEELD
EAPQYVKGRLSVEKISTVVDKFNVILEKKYTLLSRPFRELTSQEMSKYED
LRDAFCPEVSGREFLTDSEIKGFGECRMDAAVKSVVNILRHVGAMKEIRG
KNRTRIFIIN*

mRNA from alignment at tig00000159_pilon:772349..773281+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10584.t1 ID=Gchil10584.t1|Name=Gchil10584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000159_pilon:772349..773281+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACACTCCTATCTGCACAAAACCTTCACCCATCGAGGAATGGAATTC
CAACTTTAACAACCAAGTTTCTGCACTTCGCGCACTTCTTCCCGTGCGTT
CTGCTGGAAATGGAGATGCAGCTGACGAGCAAGTGTCAACGGCTTTTGAA
GCGGCTTGCAAATCGCTAGCAGACGTTGACCAAATGTTTTCCACATTGAA
ACAATACATTCAACAGGAAGAAGCGCAACTGAATCAACTTAAAAAACTCC
AAAGCCATATACAGAGAGCTTCTTCTCAGATGAAGTTCATAGAAAAACAA
ATGCCGGAAGAACTGCAGGCTTCTCTCAATGCTACCGATCGTGATCAGGA
AGGTATGCCTCTGTCCCGACCCAATTCGAAAGATTCCGAGGAAAGCAATG
TGCTTGTCAACAACACGGGCAACCGCCCTACCAAGAGTATGATTGAAAGA
AATTCCTCACTGCGGGGCAAGAAACCGCCGCCCGCTAAGAGCCCGATCAA
AACAACATCGAAAACGACGAAACGACGCGGGGGAAAGTCGCGAGAAGAAC
CAATCTCAGATCCACCGCAGATTCGATATGTGACGCAAGAAGAACTCGAT
GAGGCACCGCAGTACGTCAAGGGACGCCTATCTGTCGAGAAGATCAGCAC
GGTTGTTGACAAATTTAATGTTATTCTTGAAAAGAAATACACACTTCTAA
GCAGACCGTTCCGAGAGCTCACTTCACAAGAAATGTCGAAGTATGAAGAT
CTCCGGGATGCGTTTTGTCCAGAAGTAAGCGGTAGAGAATTTCTTACAGA
TTCTGAAATCAAGGGCTTCGGAGAGTGTCGAATGGATGCCGCTGTAAAAT
CTGTCGTCAATATCCTCCGACATGTTGGTGCGATGAAAGAAATTCGCGGG
AAGAACAGGACCCGCATCTTCATCATCAACTAA

Coding sequence (CDS) from alignment at tig00000159_pilon:772349..773281+

>Gchil10584.t1 ID=Gchil10584.t1|Name=Gchil10584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00000159_pilon:772349..773281+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACACTCCTATCTGCACAAAACCTTCACCCATCGAGGAATGGAATTC
CAACTTTAACAACCAAGTTTCTGCACTTCGCGCACTTCTTCCCGTGCGTT
CTGCTGGAAATGGAGATGCAGCTGACGAGCAAGTGTCAACGGCTTTTGAA
GCGGCTTGCAAATCGCTAGCAGACGTTGACCAAATGTTTTCCACATTGAA
ACAATACATTCAACAGGAAGAAGCGCAACTGAATCAACTTAAAAAACTCC
AAAGCCATATACAGAGAGCTTCTTCTCAGATGAAGTTCATAGAAAAACAA
ATGCCGGAAGAACTGCAGGCTTCTCTCAATGCTACCGATCGTGATCAGGA
AGGTATGCCTCTGTCCCGACCCAATTCGAAAGATTCCGAGGAAAGCAATG
TGCTTGTCAACAACACGGGCAACCGCCCTACCAAGAGTATGATTGAAAGA
AATTCCTCACTGCGGGGCAAGAAACCGCCGCCCGCTAAGAGCCCGATCAA
AACAACATCGAAAACGACGAAACGACGCGGGGGAAAGTCGCGAGAAGAAC
CAATCTCAGATCCACCGCAGATTCGATATGTGACGCAAGAAGAACTCGAT
GAGGCACCGCAGTACGTCAAGGGACGCCTATCTGTCGAGAAGATCAGCAC
GGTTGTTGACAAATTTAATGTTATTCTTGAAAAGAAATACACACTTCTAA
GCAGACCGTTCCGAGAGCTCACTTCACAAGAAATGTCGAAGTATGAAGAT
CTCCGGGATGCGTTTTGTCCAGAAGTAAGCGGTAGAGAATTTCTTACAGA
TTCTGAAATCAAGGGCTTCGGAGAGTGTCGAATGGATGCCGCTGTAAAAT
CTGTCGTCAATATCCTCCGACATGTTGGTGCGATGAAAGAAATTCGCGGG
AAGAACAGGACCCGCATCTTCATCATCAACTAA