Gchil10580.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10580.t1
Unique NameGchil10580.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:766298..767377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10580Gchil10580Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 766298..767377 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10580.t1.start1Gchil10580.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 766298..766300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10580.t1.CDS1Gchil10580.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 766298..767377 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10580.t1.exon1Gchil10580.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 766298..767377 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10580.t1.stop1Gchil10580.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 767375..767377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10580.t1Gchil10580.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 766298..767377 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10580.t1 ID=Gchil10580.t1|Name=Gchil10580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp
MAGIKHATKKKFARSTTRKKTIHSGISSEYTTLRGQLTSISSSVKTLMKG
FNTARESWLAVAKEEKSFTETLAAAFPDDGPVKSHVKEVESAVHQMQQKM
LANEGPDTPHSKIVAVLEGYLKLIDDLETDCADVETSYTEVSRYQKKVDK
LQKKPGKRQKQLQRNLEKLSVARGAHQTKLDDIVKRLKTAQEKHQVVFQC
AHHAYWIAQDRYFTTVEKITQSVRWESVSVQERITDIDIHATEKLEPLLR
AVALLPPVTASDITTPPAIQPPSPTKHQDEVIPSPEKEKETKEEKDEDGE
RKTGKVGADDSKAEAETSKRASSKAGESKDKAKKLPETPLSTPRKAVESE
PVTPEVKAL*
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spliced messenger RNA

>Gchil10580.t1 ID=Gchil10580.t1|Name=Gchil10580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000159_pilon:766298..767377+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCATCAAACATGCAACCAAGAAAAAGTTTGCCAGGTCTACTAC
CCGCAAGAAGACTATTCATTCTGGAATTAGTTCAGAGTACACCACTCTAC
GCGGTCAGTTAACCTCTATATCATCTTCTGTCAAGACTCTCATGAAAGGG
TTCAACACTGCCCGAGAGTCGTGGTTGGCCGTGGCCAAGGAGGAAAAGAG
TTTCACTGAAACTCTTGCTGCCGCGTTTCCCGATGACGGACCCGTCAAGT
CTCATGTCAAAGAAGTGGAAAGTGCAGTGCATCAGATGCAACAAAAAATG
CTTGCCAACGAAGGTCCAGATACCCCACACAGCAAAATAGTTGCAGTTCT
CGAGGGATATCTAAAACTTATCGACGATTTGGAGACCGACTGCGCTGATG
TAGAGACTAGCTACACTGAGGTGTCACGCTACCAAAAGAAGGTGGACAAA
CTGCAAAAGAAACCGGGTAAGCGTCAGAAACAGCTGCAACGCAATCTTGA
AAAACTCAGTGTGGCAAGAGGGGCGCATCAGACCAAATTGGACGATATTG
TGAAGAGGTTGAAGACTGCGCAGGAAAAACATCAAGTTGTGTTCCAGTGT
GCCCACCATGCCTACTGGATTGCTCAGGATCGATATTTCACCACCGTGGA
AAAGATCACCCAGTCTGTCAGATGGGAGAGTGTGTCTGTTCAAGAGCGCA
TCACGGACATCGACATTCATGCCACTGAAAAGCTCGAACCTCTTCTTCGC
GCAGTCGCGCTATTACCGCCGGTAACAGCCAGTGACATTACTACCCCACC
TGCAATTCAGCCTCCGTCGCCAACCAAGCATCAAGACGAGGTCATCCCTT
CCCCTgaaaaagagaaagagacaaaggaagaaaagGATGAGGATGGGGAG
CGCAAAACTGGGAAGGTTGGGGCTGACGACAGCAAAGCTGAAGCTGAGAC
GAGCAAACGTGCGTCGAGCAAAGCTGGAGAGAGCAAGGACAAAGCGAAGA
AACTTCCTGAAACACCGTTGTCCACTCCTCGGAAGGCAGTAGAGTCCGAG
CCTGTTACTCCCGAAGTAAAGGCTTTGTAG
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protein sequence of Gchil10580.t1

>Gchil10580.t1 ID=Gchil10580.t1|Name=Gchil10580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=360bp
MAGIKHATKKKFARSTTRKKTIHSGISSEYTTLRGQLTSISSSVKTLMKG
FNTARESWLAVAKEEKSFTETLAAAFPDDGPVKSHVKEVESAVHQMQQKM
LANEGPDTPHSKIVAVLEGYLKLIDDLETDCADVETSYTEVSRYQKKVDK
LQKKPGKRQKQLQRNLEKLSVARGAHQTKLDDIVKRLKTAQEKHQVVFQC
AHHAYWIAQDRYFTTVEKITQSVRWESVSVQERITDIDIHATEKLEPLLR
AVALLPPVTASDITTPPAIQPPSPTKHQDEVIPSPEKEKETKEEKDEDGE
RKTGKVGADDSKAEAETSKRASSKAGESKDKAKKLPETPLSTPRKAVESE
PVTPEVKAL*
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mRNA from alignment at tig00000159_pilon:766298..767377+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10580.t1 ID=Gchil10580.t1|Name=Gchil10580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000159_pilon:766298..767377+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGGCATCAAACATGCAACCAAGAAAAAGTTTGCCAGGTCTACTAC
CCGCAAGAAGACTATTCATTCTGGAATTAGTTCAGAGTACACCACTCTAC
GCGGTCAGTTAACCTCTATATCATCTTCTGTCAAGACTCTCATGAAAGGG
TTCAACACTGCCCGAGAGTCGTGGTTGGCCGTGGCCAAGGAGGAAAAGAG
TTTCACTGAAACTCTTGCTGCCGCGTTTCCCGATGACGGACCCGTCAAGT
CTCATGTCAAAGAAGTGGAAAGTGCAGTGCATCAGATGCAACAAAAAATG
CTTGCCAACGAAGGTCCAGATACCCCACACAGCAAAATAGTTGCAGTTCT
CGAGGGATATCTAAAACTTATCGACGATTTGGAGACCGACTGCGCTGATG
TAGAGACTAGCTACACTGAGGTGTCACGCTACCAAAAGAAGGTGGACAAA
CTGCAAAAGAAACCGGGTAAGCGTCAGAAACAGCTGCAACGCAATCTTGA
AAAACTCAGTGTGGCAAGAGGGGCGCATCAGACCAAATTGGACGATATTG
TGAAGAGGTTGAAGACTGCGCAGGAAAAACATCAAGTTGTGTTCCAGTGT
GCCCACCATGCCTACTGGATTGCTCAGGATCGATATTTCACCACCGTGGA
AAAGATCACCCAGTCTGTCAGATGGGAGAGTGTGTCTGTTCAAGAGCGCA
TCACGGACATCGACATTCATGCCACTGAAAAGCTCGAACCTCTTCTTCGC
GCAGTCGCGCTATTACCGCCGGTAACAGCCAGTGACATTACTACCCCACC
TGCAATTCAGCCTCCGTCGCCAACCAAGCATCAAGACGAGGTCATCCCTT
CCCCTgaaaaagagaaagagacaaaggaagaaaagGATGAGGATGGGGAG
CGCAAAACTGGGAAGGTTGGGGCTGACGACAGCAAAGCTGAAGCTGAGAC
GAGCAAACGTGCGTCGAGCAAAGCTGGAGAGAGCAAGGACAAAGCGAAGA
AACTTCCTGAAACACCGTTGTCCACTCCTCGGAAGGCAGTAGAGTCCGAG
CCTGTTACTCCCGAAGTAAAGGCTTTGTAG
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Coding sequence (CDS) from alignment at tig00000159_pilon:766298..767377+

>Gchil10580.t1 ID=Gchil10580.t1|Name=Gchil10580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000159_pilon:766298..767377+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGGCATCAAACATGCAACCAAGAAAAAGTTTGCCAGGTCTACTAC
CCGCAAGAAGACTATTCATTCTGGAATTAGTTCAGAGTACACCACTCTAC
GCGGTCAGTTAACCTCTATATCATCTTCTGTCAAGACTCTCATGAAAGGG
TTCAACACTGCCCGAGAGTCGTGGTTGGCCGTGGCCAAGGAGGAAAAGAG
TTTCACTGAAACTCTTGCTGCCGCGTTTCCCGATGACGGACCCGTCAAGT
CTCATGTCAAAGAAGTGGAAAGTGCAGTGCATCAGATGCAACAAAAAATG
CTTGCCAACGAAGGTCCAGATACCCCACACAGCAAAATAGTTGCAGTTCT
CGAGGGATATCTAAAACTTATCGACGATTTGGAGACCGACTGCGCTGATG
TAGAGACTAGCTACACTGAGGTGTCACGCTACCAAAAGAAGGTGGACAAA
CTGCAAAAGAAACCGGGTAAGCGTCAGAAACAGCTGCAACGCAATCTTGA
AAAACTCAGTGTGGCAAGAGGGGCGCATCAGACCAAATTGGACGATATTG
TGAAGAGGTTGAAGACTGCGCAGGAAAAACATCAAGTTGTGTTCCAGTGT
GCCCACCATGCCTACTGGATTGCTCAGGATCGATATTTCACCACCGTGGA
AAAGATCACCCAGTCTGTCAGATGGGAGAGTGTGTCTGTTCAAGAGCGCA
TCACGGACATCGACATTCATGCCACTGAAAAGCTCGAACCTCTTCTTCGC
GCAGTCGCGCTATTACCGCCGGTAACAGCCAGTGACATTACTACCCCACC
TGCAATTCAGCCTCCGTCGCCAACCAAGCATCAAGACGAGGTCATCCCTT
CCCCTgaaaaagagaaagagacaaaggaagaaaagGATGAGGATGGGGAG
CGCAAAACTGGGAAGGTTGGGGCTGACGACAGCAAAGCTGAAGCTGAGAC
GAGCAAACGTGCGTCGAGCAAAGCTGGAGAGAGCAAGGACAAAGCGAAGA
AACTTCCTGAAACACCGTTGTCCACTCCTCGGAAGGCAGTAGAGTCCGAG
CCTGTTACTCCCGAAGTAAAGGCTTTGTAG
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