Gchil10573.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10573.t1
Unique NameGchil10573.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length582
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:745745..747490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0TKV4
PFAMsPkinase
Max annot lvl2836|Bacillariophyta
KEGG koko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
Evalue1.69e-37
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota,2XB8X@2836|Bacillariophyta
EC2.7.11.17
DescriptionBelongs to the protein kinase superfamily
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10573Gchil10573Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 745745..747490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10573.t1.stop1Gchil10573.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 745745..745747 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10573.t1.CDS1Gchil10573.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 745745..747490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10573.t1.exon1Gchil10573.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 745745..747490 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10573.t1.start1Gchil10573.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 747488..747490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10573.t1Gchil10573.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 745745..747490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10573.t1 ID=Gchil10573.t1|Name=Gchil10573.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp
MSAAPSPLAASRAPRARARPRPRLHRLSDEKPEDRKRFPDYSLMRRDRRP
QPVINIPPPRTTANVPHLFPDDVLAVPETTTPDLHSDYPANGGYVRASYS
DHAPPVRVADPHVVPLRPWMTPAIVSAGYVVVNVISEGSFGTVLKATRVA
EPVWVAIKVVKKVQLTEKETDALRRQALTLRTIRHNYIVRFNDHFEDHYY
IYHVFEYLSGGDLYDRLQARGKPYTEAQLLFLAKQIFYAVAYLHSMRAAH
RDIKLENFVFETSPHDQRQVIKLIDFDLLIVRSSHSPPTQTCSDVCGTIL
YVSPEIASAKEHVPEQSDVWACGVVLYVLISYSMPFLGETNRDILRSVRT
QQPTFSSPVWASVSPGTKQLISDLLSKSPAERPSAAEALDRVKYLSSQIA
DLHSSSRLRVFTQGLRSTSLNLWDPSGNLVRSQISSDLPKSERYENARRI
HSSFPTHEEGSSASSIQTSAMQSYTDSQLTNETHLVLSQQYTPQETGYVV
KAPRRRRAQTPLHDPYSNSEFRTSPALGEAMAQKHVMLNQTNKVEMNSLN
INPEATTLRHRRTLKGRLGSRLRSWMSLGGR*
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spliced messenger RNA

>Gchil10573.t1 ID=Gchil10573.t1|Name=Gchil10573.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00000159_pilon:745745..747490- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCCGCGCCCTCGCCGCTTGCAGCGTCGCGTGCGCCGCGCGCTCG
CGCCCGTCCCCGTCCGCGTCTTCATCGTCTGTCCGACGAGAAGCCCGAGG
ACCGCAAGCGCTTCCCAGACTACTCGCTTATGCGCCGCGATCGACGCCCC
CAGCCGGTCATTAACATTCCTCCGCCGCGCACTACTGCCAATGTCCCGCA
TCTCTTTCCCGACGACGTGCTCGCTGTTCCGGAGACCACCACGCCCGATC
TGCATTCCGACTACCCCGCAAACGGAGGCTACGTGCGTGCCTCCTACTCC
GATCATGCCCCGCCTGTACGCGTCGCCGACCCCCACGTCGTCCCACTGCG
CCCTTGGATGACGCCGGCCATCGTGTCCGCCGGCTATGTGGTCGTCAACG
TCATCAGCGAGGGCAGTTTTGGCACCGTGCTCAAGGCCACCCGCGTCGCC
GAACCCGTCTGGGTGGCCATCAAGGTCGTCAAGAAGGTCCAGCTCACCGA
AAAGGAAACAGACGCCCTCAGACGACAGGCCCTCACGTTGCGCACCATTC
GCCACAACTACATTGTACGCTTTAACGACCATTTTGAGGACCACTATTAC
ATCTATCACGTCTTCGAGTATCTCAGCGGCGGCGACTTGTATGACCGCCT
TCAAGCACGCGGCAAGCCCTACACCGAGGCCCAGCTGCTTTTCCTGGCCA
AGCAGATATTCTACGCTGTCGCGTACTTGCATTCCATGCGTGCCGCTCAC
CGCGACATCAAATTGGAAAACTTCGTCTTCGAGACCAGCCCGCATGACCA
GCGCCAAGTCATAAAGCTCATCGACTTTGACCTGCTCATTGTTCGCAGCA
GTCATTCCCCGCCCACACAAACCTGTTCTGATGTCTGTGGCACTATTTTG
TACGTCTCGCCGGAAATCGCCAGTGCCAAAGAGCACGTCCCCGAACAATC
CGATGTGTGGGCCTGTGGCGTCGTCTTGTATGTCCTGATTTCGTATAGCA
TGCCGTTTCTGGGAGAAACCAATCGTGACATTCTTCGCTCCGTGCGCACC
CAACAGCCCACGTTTTCGTCCCCTGTGTGGGCTTCAGTTTCGCCCGGCAC
CAAACAACTAATCAGCGACTTGTTGAGTAAGAGTCCTGCCGAGCGACCTT
CCGCCGCAGAGGCCCTGGACCGCGTCAAGTATCTCTCATCGCAAATCGCT
GACTTGCATTCTAGTTCGCGCCTCCGCGTTTTTACCCAAGGTTTGCGCTC
AACAAGCCTCAATCTTTGGGACCCGTCGGGCAATCTCGTTCGAAGTCAAA
TTTCCTCCGACCTGCCCAAGTCGGAGCGTTATGAAAATGCTCGCCGCATC
CATTCCAGTTTTCCCACCCATGAAGAAGGCTCCTCGGCCTCAAGTATACA
GACCTCAGCTATGCAATCTTACACCGACTCCCAACTCACCAACGAGACTC
ACCTTGTCCTGTCGCAACAGTACACCCCGCAAGAAACTGGCTACGTTGTC
AAAGCGCCTAGACGAAGACGCGCTCAGACCCCTCTCCATGATCCGTACAG
CAATTCAGAGTTCCGCACTTCACCAGCGCTTGGCGAGGCCATGGCGCAGA
AGCATGTTATGCTTAACCAAACCAACAAAGTGGAAATGAATTCTTTGAAT
ATAAACCCCGAGGCAACTACGCTACGCCACCGTCGAACTCTCAAGGGGCG
CTTGGGGTCCAGACTTCGCAGCTGGATGAGCTTGGGCGGCCGTTGA
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protein sequence of Gchil10573.t1

>Gchil10573.t1 ID=Gchil10573.t1|Name=Gchil10573.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=582bp
MSAAPSPLAASRAPRARARPRPRLHRLSDEKPEDRKRFPDYSLMRRDRRP
QPVINIPPPRTTANVPHLFPDDVLAVPETTTPDLHSDYPANGGYVRASYS
DHAPPVRVADPHVVPLRPWMTPAIVSAGYVVVNVISEGSFGTVLKATRVA
EPVWVAIKVVKKVQLTEKETDALRRQALTLRTIRHNYIVRFNDHFEDHYY
IYHVFEYLSGGDLYDRLQARGKPYTEAQLLFLAKQIFYAVAYLHSMRAAH
RDIKLENFVFETSPHDQRQVIKLIDFDLLIVRSSHSPPTQTCSDVCGTIL
YVSPEIASAKEHVPEQSDVWACGVVLYVLISYSMPFLGETNRDILRSVRT
QQPTFSSPVWASVSPGTKQLISDLLSKSPAERPSAAEALDRVKYLSSQIA
DLHSSSRLRVFTQGLRSTSLNLWDPSGNLVRSQISSDLPKSERYENARRI
HSSFPTHEEGSSASSIQTSAMQSYTDSQLTNETHLVLSQQYTPQETGYVV
KAPRRRRAQTPLHDPYSNSEFRTSPALGEAMAQKHVMLNQTNKVEMNSLN
INPEATTLRHRRTLKGRLGSRLRSWMSLGGR*
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mRNA from alignment at tig00000159_pilon:745745..747490-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10573.t1 ID=Gchil10573.t1|Name=Gchil10573.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00000159_pilon:745745..747490- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCCGCGCCCTCGCCGCTTGCAGCGTCGCGTGCGCCGCGCGCTCG
CGCCCGTCCCCGTCCGCGTCTTCATCGTCTGTCCGACGAGAAGCCCGAGG
ACCGCAAGCGCTTCCCAGACTACTCGCTTATGCGCCGCGATCGACGCCCC
CAGCCGGTCATTAACATTCCTCCGCCGCGCACTACTGCCAATGTCCCGCA
TCTCTTTCCCGACGACGTGCTCGCTGTTCCGGAGACCACCACGCCCGATC
TGCATTCCGACTACCCCGCAAACGGAGGCTACGTGCGTGCCTCCTACTCC
GATCATGCCCCGCCTGTACGCGTCGCCGACCCCCACGTCGTCCCACTGCG
CCCTTGGATGACGCCGGCCATCGTGTCCGCCGGCTATGTGGTCGTCAACG
TCATCAGCGAGGGCAGTTTTGGCACCGTGCTCAAGGCCACCCGCGTCGCC
GAACCCGTCTGGGTGGCCATCAAGGTCGTCAAGAAGGTCCAGCTCACCGA
AAAGGAAACAGACGCCCTCAGACGACAGGCCCTCACGTTGCGCACCATTC
GCCACAACTACATTGTACGCTTTAACGACCATTTTGAGGACCACTATTAC
ATCTATCACGTCTTCGAGTATCTCAGCGGCGGCGACTTGTATGACCGCCT
TCAAGCACGCGGCAAGCCCTACACCGAGGCCCAGCTGCTTTTCCTGGCCA
AGCAGATATTCTACGCTGTCGCGTACTTGCATTCCATGCGTGCCGCTCAC
CGCGACATCAAATTGGAAAACTTCGTCTTCGAGACCAGCCCGCATGACCA
GCGCCAAGTCATAAAGCTCATCGACTTTGACCTGCTCATTGTTCGCAGCA
GTCATTCCCCGCCCACACAAACCTGTTCTGATGTCTGTGGCACTATTTTG
TACGTCTCGCCGGAAATCGCCAGTGCCAAAGAGCACGTCCCCGAACAATC
CGATGTGTGGGCCTGTGGCGTCGTCTTGTATGTCCTGATTTCGTATAGCA
TGCCGTTTCTGGGAGAAACCAATCGTGACATTCTTCGCTCCGTGCGCACC
CAACAGCCCACGTTTTCGTCCCCTGTGTGGGCTTCAGTTTCGCCCGGCAC
CAAACAACTAATCAGCGACTTGTTGAGTAAGAGTCCTGCCGAGCGACCTT
CCGCCGCAGAGGCCCTGGACCGCGTCAAGTATCTCTCATCGCAAATCGCT
GACTTGCATTCTAGTTCGCGCCTCCGCGTTTTTACCCAAGGTTTGCGCTC
AACAAGCCTCAATCTTTGGGACCCGTCGGGCAATCTCGTTCGAAGTCAAA
TTTCCTCCGACCTGCCCAAGTCGGAGCGTTATGAAAATGCTCGCCGCATC
CATTCCAGTTTTCCCACCCATGAAGAAGGCTCCTCGGCCTCAAGTATACA
GACCTCAGCTATGCAATCTTACACCGACTCCCAACTCACCAACGAGACTC
ACCTTGTCCTGTCGCAACAGTACACCCCGCAAGAAACTGGCTACGTTGTC
AAAGCGCCTAGACGAAGACGCGCTCAGACCCCTCTCCATGATCCGTACAG
CAATTCAGAGTTCCGCACTTCACCAGCGCTTGGCGAGGCCATGGCGCAGA
AGCATGTTATGCTTAACCAAACCAACAAAGTGGAAATGAATTCTTTGAAT
ATAAACCCCGAGGCAACTACGCTACGCCACCGTCGAACTCTCAAGGGGCG
CTTGGGGTCCAGACTTCGCAGCTGGATGAGCTTGGGCGGCCGTTGA
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Coding sequence (CDS) from alignment at tig00000159_pilon:745745..747490-

>Gchil10573.t1 ID=Gchil10573.t1|Name=Gchil10573.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1746bp|location=Sequence derived from alignment at tig00000159_pilon:745745..747490- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGCCGCGCCCTCGCCGCTTGCAGCGTCGCGTGCGCCGCGCGCTCG
CGCCCGTCCCCGTCCGCGTCTTCATCGTCTGTCCGACGAGAAGCCCGAGG
ACCGCAAGCGCTTCCCAGACTACTCGCTTATGCGCCGCGATCGACGCCCC
CAGCCGGTCATTAACATTCCTCCGCCGCGCACTACTGCCAATGTCCCGCA
TCTCTTTCCCGACGACGTGCTCGCTGTTCCGGAGACCACCACGCCCGATC
TGCATTCCGACTACCCCGCAAACGGAGGCTACGTGCGTGCCTCCTACTCC
GATCATGCCCCGCCTGTACGCGTCGCCGACCCCCACGTCGTCCCACTGCG
CCCTTGGATGACGCCGGCCATCGTGTCCGCCGGCTATGTGGTCGTCAACG
TCATCAGCGAGGGCAGTTTTGGCACCGTGCTCAAGGCCACCCGCGTCGCC
GAACCCGTCTGGGTGGCCATCAAGGTCGTCAAGAAGGTCCAGCTCACCGA
AAAGGAAACAGACGCCCTCAGACGACAGGCCCTCACGTTGCGCACCATTC
GCCACAACTACATTGTACGCTTTAACGACCATTTTGAGGACCACTATTAC
ATCTATCACGTCTTCGAGTATCTCAGCGGCGGCGACTTGTATGACCGCCT
TCAAGCACGCGGCAAGCCCTACACCGAGGCCCAGCTGCTTTTCCTGGCCA
AGCAGATATTCTACGCTGTCGCGTACTTGCATTCCATGCGTGCCGCTCAC
CGCGACATCAAATTGGAAAACTTCGTCTTCGAGACCAGCCCGCATGACCA
GCGCCAAGTCATAAAGCTCATCGACTTTGACCTGCTCATTGTTCGCAGCA
GTCATTCCCCGCCCACACAAACCTGTTCTGATGTCTGTGGCACTATTTTG
TACGTCTCGCCGGAAATCGCCAGTGCCAAAGAGCACGTCCCCGAACAATC
CGATGTGTGGGCCTGTGGCGTCGTCTTGTATGTCCTGATTTCGTATAGCA
TGCCGTTTCTGGGAGAAACCAATCGTGACATTCTTCGCTCCGTGCGCACC
CAACAGCCCACGTTTTCGTCCCCTGTGTGGGCTTCAGTTTCGCCCGGCAC
CAAACAACTAATCAGCGACTTGTTGAGTAAGAGTCCTGCCGAGCGACCTT
CCGCCGCAGAGGCCCTGGACCGCGTCAAGTATCTCTCATCGCAAATCGCT
GACTTGCATTCTAGTTCGCGCCTCCGCGTTTTTACCCAAGGTTTGCGCTC
AACAAGCCTCAATCTTTGGGACCCGTCGGGCAATCTCGTTCGAAGTCAAA
TTTCCTCCGACCTGCCCAAGTCGGAGCGTTATGAAAATGCTCGCCGCATC
CATTCCAGTTTTCCCACCCATGAAGAAGGCTCCTCGGCCTCAAGTATACA
GACCTCAGCTATGCAATCTTACACCGACTCCCAACTCACCAACGAGACTC
ACCTTGTCCTGTCGCAACAGTACACCCCGCAAGAAACTGGCTACGTTGTC
AAAGCGCCTAGACGAAGACGCGCTCAGACCCCTCTCCATGATCCGTACAG
CAATTCAGAGTTCCGCACTTCACCAGCGCTTGGCGAGGCCATGGCGCAGA
AGCATGTTATGCTTAACCAAACCAACAAAGTGGAAATGAATTCTTTGAAT
ATAAACCCCGAGGCAACTACGCTACGCCACCGTCGAACTCTCAAGGGGCG
CTTGGGGTCCAGACTTCGCAGCTGGATGAGCTTGGGCGGCCGTTGA
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