Gchil10571.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10571.t1
Unique NameGchil10571.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000159_piloncontigtig00000159_pilon:741982..742587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP00661
PFAMsATP-synt_C
Max annot lvl3041|Chlorophyta
KEGG koko:K03661
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Evalue4.42e-63
EggNOG OGsCOG0636@1|root,KOG0233@2759|Eukaryota,37K3B@33090|Viridiplantae,34HSB@3041|Chlorophyta
DescriptionBelongs to the V-ATPase proteolipid subunit family
COG categoryP
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10571Gchil10571Gracilaria chilensis NLEC103_M9 malegenetig00000159_pilon 741982..742587 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10571.t1.start1Gchil10571.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000159_pilon 741982..741984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10571.t1.CDS1Gchil10571.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000159_pilon 741982..742587 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10571.t1.exon1Gchil10571.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000159_pilon 741982..742587 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10571.t1.stop1Gchil10571.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000159_pilon 742585..742587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10571.t1Gchil10571.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000159_pilon 741982..742587 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10571.t1 ID=Gchil10571.t1|Name=Gchil10571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=202bp
MSTPATNATDVTSLLVSTTVSEAIFASCWWFWFMPACYHYYFDLFRGISP
YFWSALGVVFSIGISVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIF
AEACAIYGVIMAIILQAKIVESETGMPSAYAGYAIFAAGATVGLSNLFCG
LSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKVI
V*
back to top

spliced messenger RNA

>Gchil10571.t1 ID=Gchil10571.t1|Name=Gchil10571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000159_pilon:741982..742587+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACCCCCGCCACTAACGCCACCGATGTCACATCACTGCTCGTATC
CACCACCGTCAGCGAGGCAATCTTCGCCTCATGCTGGTGGTTCTGGTTCA
TGCCCGCCTGCTACCACTACTACTTCGATCTCTTCCGCGGAATATCCCCG
TACTTTTGGAGTGCTCTCGGCGTAGTATTCTCCATCGGTATCTCCGTGCT
GGGCTCTGCGTGGGGCATCTTCATCACCGGAACCTCTCTTCTTTCTGCTG
CCATCAAGCATCCCAGAATCAGCAGCAAAAATCTTGTCAGCGTAATCTTC
GCCGAAGCCTGTGCCATCTACGGTGTTATCATGGCGATCATCCTGCAAGC
CAAGATCGTCGAGTCTGAGACTGGCATGCCGTCCGCATATGCGGGATACG
CCATTTTTGCTGCCGGCGCTACTGTTGGCTTATCAAACTTGTTTTGTGGA
TTGAGTGTGGGTGTGGTCGGTTCTTCTTGCGCTCTTTCAGACGCCCAGAA
TGCTTCACTTTTCGTCAAGATTCTTATCGTCGAGATTTTTGCGTCCGCCT
TGGGCTTATTCGGTGTTATCATCGGCATCATCATGGCATCAAAGGTCATT
GTCTAA
back to top

protein sequence of Gchil10571.t1

>Gchil10571.t1 ID=Gchil10571.t1|Name=Gchil10571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=202bp
MSTPATNATDVTSLLVSTTVSEAIFASCWWFWFMPACYHYYFDLFRGISP
YFWSALGVVFSIGISVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIF
AEACAIYGVIMAIILQAKIVESETGMPSAYAGYAIFAAGATVGLSNLFCG
LSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKVI
V*
back to top

mRNA from alignment at tig00000159_pilon:741982..742587+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10571.t1 ID=Gchil10571.t1|Name=Gchil10571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000159_pilon:741982..742587+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTACCCCCGCCACTAACGCCACCGATGTCACATCACTGCTCGTATC
CACCACCGTCAGCGAGGCAATCTTCGCCTCATGCTGGTGGTTCTGGTTCA
TGCCCGCCTGCTACCACTACTACTTCGATCTCTTCCGCGGAATATCCCCG
TACTTTTGGAGTGCTCTCGGCGTAGTATTCTCCATCGGTATCTCCGTGCT
GGGCTCTGCGTGGGGCATCTTCATCACCGGAACCTCTCTTCTTTCTGCTG
CCATCAAGCATCCCAGAATCAGCAGCAAAAATCTTGTCAGCGTAATCTTC
GCCGAAGCCTGTGCCATCTACGGTGTTATCATGGCGATCATCCTGCAAGC
CAAGATCGTCGAGTCTGAGACTGGCATGCCGTCCGCATATGCGGGATACG
CCATTTTTGCTGCCGGCGCTACTGTTGGCTTATCAAACTTGTTTTGTGGA
TTGAGTGTGGGTGTGGTCGGTTCTTCTTGCGCTCTTTCAGACGCCCAGAA
TGCTTCACTTTTCGTCAAGATTCTTATCGTCGAGATTTTTGCGTCCGCCT
TGGGCTTATTCGGTGTTATCATCGGCATCATCATGGCATCAAAGGTCATT
GTCTAA
back to top

Coding sequence (CDS) from alignment at tig00000159_pilon:741982..742587+

>Gchil10571.t1 ID=Gchil10571.t1|Name=Gchil10571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000159_pilon:741982..742587+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTACCCCCGCCACTAACGCCACCGATGTCACATCACTGCTCGTATC
CACCACCGTCAGCGAGGCAATCTTCGCCTCATGCTGGTGGTTCTGGTTCA
TGCCCGCCTGCTACCACTACTACTTCGATCTCTTCCGCGGAATATCCCCG
TACTTTTGGAGTGCTCTCGGCGTAGTATTCTCCATCGGTATCTCCGTGCT
GGGCTCTGCGTGGGGCATCTTCATCACCGGAACCTCTCTTCTTTCTGCTG
CCATCAAGCATCCCAGAATCAGCAGCAAAAATCTTGTCAGCGTAATCTTC
GCCGAAGCCTGTGCCATCTACGGTGTTATCATGGCGATCATCCTGCAAGC
CAAGATCGTCGAGTCTGAGACTGGCATGCCGTCCGCATATGCGGGATACG
CCATTTTTGCTGCCGGCGCTACTGTTGGCTTATCAAACTTGTTTTGTGGA
TTGAGTGTGGGTGTGGTCGGTTCTTCTTGCGCTCTTTCAGACGCCCAGAA
TGCTTCACTTTTCGTCAAGATTCTTATCGTCGAGATTTTTGCGTCCGCCT
TGGGCTTATTCGGTGTTATCATCGGCATCATCATGGCATCAAAGGTCATT
GTCTAA
back to top