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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 3055.EDP00661 |
PFAMs | ATP-synt_C |
Max annot lvl | 3041|Chlorophyta |
KEGG ko | ko:K03661 |
KEGG TC | 3.A.2.2 |
KEGG Pathway | ko00190,ko01100,ko04142,ko04145,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04721,map05110,map05120,map05152,map05323 |
KEGG Module | M00160 |
Evalue | 4.42e-63 |
EggNOG OGs | COG0636@1|root,KOG0233@2759|Eukaryota,37K3B@33090|Viridiplantae,34HSB@3041|Chlorophyta |
Description | Belongs to the V-ATPase proteolipid subunit family |
COG category | P |
BRITE | ko00000,ko00001,ko00002 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10571.t1 ID=Gchil10571.t1|Name=Gchil10571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=202bp MSTPATNATDVTSLLVSTTVSEAIFASCWWFWFMPACYHYYFDLFRGISP YFWSALGVVFSIGISVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIF AEACAIYGVIMAIILQAKIVESETGMPSAYAGYAIFAAGATVGLSNLFCG LSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKVI V* back to topspliced messenger RNA >Gchil10571.t1 ID=Gchil10571.t1|Name=Gchil10571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000159_pilon:741982..742587+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTACCCCCGCCACTAACGCCACCGATGTCACATCACTGCTCGTATC CACCACCGTCAGCGAGGCAATCTTCGCCTCATGCTGGTGGTTCTGGTTCA TGCCCGCCTGCTACCACTACTACTTCGATCTCTTCCGCGGAATATCCCCG TACTTTTGGAGTGCTCTCGGCGTAGTATTCTCCATCGGTATCTCCGTGCT GGGCTCTGCGTGGGGCATCTTCATCACCGGAACCTCTCTTCTTTCTGCTG CCATCAAGCATCCCAGAATCAGCAGCAAAAATCTTGTCAGCGTAATCTTC GCCGAAGCCTGTGCCATCTACGGTGTTATCATGGCGATCATCCTGCAAGC CAAGATCGTCGAGTCTGAGACTGGCATGCCGTCCGCATATGCGGGATACG CCATTTTTGCTGCCGGCGCTACTGTTGGCTTATCAAACTTGTTTTGTGGA TTGAGTGTGGGTGTGGTCGGTTCTTCTTGCGCTCTTTCAGACGCCCAGAA TGCTTCACTTTTCGTCAAGATTCTTATCGTCGAGATTTTTGCGTCCGCCT TGGGCTTATTCGGTGTTATCATCGGCATCATCATGGCATCAAAGGTCATT GTCTAA back to topprotein sequence of Gchil10571.t1 >Gchil10571.t1 ID=Gchil10571.t1|Name=Gchil10571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=202bp
MSTPATNATDVTSLLVSTTVSEAIFASCWWFWFMPACYHYYFDLFRGISP YFWSALGVVFSIGISVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIF AEACAIYGVIMAIILQAKIVESETGMPSAYAGYAIFAAGATVGLSNLFCG LSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKVI V* back to topmRNA from alignment at tig00000159_pilon:741982..742587+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10571.t1 ID=Gchil10571.t1|Name=Gchil10571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000159_pilon:741982..742587+ (Gracilaria chilensis NLEC103_M9 male) ATGTCTACCCCCGCCACTAACGCCACCGATGTCACATCACTGCTCGTATC
CACCACCGTCAGCGAGGCAATCTTCGCCTCATGCTGGTGGTTCTGGTTCA
TGCCCGCCTGCTACCACTACTACTTCGATCTCTTCCGCGGAATATCCCCG
TACTTTTGGAGTGCTCTCGGCGTAGTATTCTCCATCGGTATCTCCGTGCT
GGGCTCTGCGTGGGGCATCTTCATCACCGGAACCTCTCTTCTTTCTGCTG
CCATCAAGCATCCCAGAATCAGCAGCAAAAATCTTGTCAGCGTAATCTTC
GCCGAAGCCTGTGCCATCTACGGTGTTATCATGGCGATCATCCTGCAAGC
CAAGATCGTCGAGTCTGAGACTGGCATGCCGTCCGCATATGCGGGATACG
CCATTTTTGCTGCCGGCGCTACTGTTGGCTTATCAAACTTGTTTTGTGGA
TTGAGTGTGGGTGTGGTCGGTTCTTCTTGCGCTCTTTCAGACGCCCAGAA
TGCTTCACTTTTCGTCAAGATTCTTATCGTCGAGATTTTTGCGTCCGCCT
TGGGCTTATTCGGTGTTATCATCGGCATCATCATGGCATCAAAGGTCATT
GTCTAA back to topCoding sequence (CDS) from alignment at tig00000159_pilon:741982..742587+ >Gchil10571.t1 ID=Gchil10571.t1|Name=Gchil10571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000159_pilon:741982..742587+ (Gracilaria chilensis NLEC103_M9 male) ATGTCTACCCCCGCCACTAACGCCACCGATGTCACATCACTGCTCGTATC CACCACCGTCAGCGAGGCAATCTTCGCCTCATGCTGGTGGTTCTGGTTCA TGCCCGCCTGCTACCACTACTACTTCGATCTCTTCCGCGGAATATCCCCG TACTTTTGGAGTGCTCTCGGCGTAGTATTCTCCATCGGTATCTCCGTGCT GGGCTCTGCGTGGGGCATCTTCATCACCGGAACCTCTCTTCTTTCTGCTG CCATCAAGCATCCCAGAATCAGCAGCAAAAATCTTGTCAGCGTAATCTTC GCCGAAGCCTGTGCCATCTACGGTGTTATCATGGCGATCATCCTGCAAGC CAAGATCGTCGAGTCTGAGACTGGCATGCCGTCCGCATATGCGGGATACG CCATTTTTGCTGCCGGCGCTACTGTTGGCTTATCAAACTTGTTTTGTGGA TTGAGTGTGGGTGTGGTCGGTTCTTCTTGCGCTCTTTCAGACGCCCAGAA TGCTTCACTTTTCGTCAAGATTCTTATCGTCGAGATTTTTGCGTCCGCCT TGGGCTTATTCGGTGTTATCATCGGCATCATCATGGCATCAAAGGTCATT GTCTAA back to top
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